Wall clock time and date at job start Tue Mar 31 2020 10:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00308 * 2 1 4 4 H 1.48508 * 109.47041 * 270.00169 * 3 2 1 5 5 H 1.48504 * 109.46938 * 29.99591 * 3 2 1 6 6 H 1.48496 * 109.47444 * 149.99837 * 3 2 1 7 7 C 1.37879 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47111 * 179.97438 * 9 7 2 11 11 S 1.81408 * 109.47412 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54121 * 68.37422 * 11 10 9 13 13 O 1.42097 * 110.54186 * 291.62447 * 11 10 9 14 14 O 1.52200 * 104.44881 * 180.02562 * 11 10 9 15 15 C 1.35967 * 114.00062 * 75.00290 * 14 11 10 16 16 C 1.38704 * 120.00614 * 89.99849 * 15 14 11 17 17 C 1.38177 * 120.05440 * 180.28962 * 16 15 14 18 18 C 1.38684 * 120.13951 * 359.49193 * 17 16 15 19 19 C 1.38969 * 119.90805 * 0.42209 * 18 17 16 20 20 C 1.38615 * 120.00234 * 269.97467 * 15 14 11 21 21 O 1.36115 * 120.78269 * 180.02562 * 19 18 17 22 22 C 1.43169 * 116.73270 * 342.79762 * 21 19 18 23 23 C 1.53465 * 108.24808 * 46.18332 * 22 21 19 24 24 O 1.36214 * 119.33251 * 180.02562 * 18 17 16 25 25 H 0.96997 * 119.99824 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47603 * 59.99729 * 9 7 2 27 27 H 1.08999 * 109.47573 * 299.99759 * 9 7 2 28 28 H 1.08999 * 109.47104 * 59.99879 * 10 9 7 29 29 H 1.09002 * 109.47174 * 299.99687 * 10 9 7 30 30 H 1.08002 * 119.96832 * 0.02562 * 16 15 14 31 31 H 1.07995 * 119.92881 * 179.73636 * 17 16 15 32 32 H 1.08000 * 119.98483 * 0.02562 * 20 15 14 33 33 H 1.09000 * 109.70903 * 165.87805 * 22 21 19 34 34 H 1.09000 * 109.70432 * 286.49904 * 22 21 19 35 35 H 1.08996 * 109.71143 * 59.93675 * 23 22 21 36 36 H 1.09000 * 109.70797 * 180.56434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.6637 -5.4201 -1.2354 13 8 0.6646 -5.4194 1.2386 14 8 2.4247 -6.2989 0.0019 15 6 3.0445 -6.4561 1.2018 16 6 2.5482 -7.3644 2.1252 17 6 3.1738 -7.5206 3.3473 18 6 4.3053 -6.7781 3.6503 19 6 4.8054 -5.8687 2.7261 20 6 4.1728 -5.7090 1.5023 21 8 5.9149 -5.1311 3.0048 22 6 6.3037 -5.0471 4.3801 23 6 6.2501 -6.4579 4.9817 24 8 4.9092 -6.9456 4.8597 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 1.6696 -7.9469 1.8904 31 1 2.7832 -8.2253 4.0664 32 1 4.5591 -5.0018 0.7832 33 1 7.3182 -4.6551 4.4520 34 1 5.6171 -4.3924 4.9167 35 1 6.9316 -7.1144 4.4407 36 1 6.5328 -6.4199 6.0337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732215595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:46 Heat of formation + Delta-G solvation = -177.562251 kcal Electronic energy + Delta-G solvation = -24294.907083 eV Core-core repulsion = 20450.969743 eV Total energy + Delta-G solvation = -3843.937340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.62936 -41.58174 -38.39446 -38.36005 -37.98746 -37.25270 -35.94361 -33.24878 -32.17069 -31.67036 -29.38701 -27.70499 -25.98083 -24.67583 -23.56855 -23.02499 -21.24280 -19.95159 -19.51255 -18.93671 -18.82623 -18.42917 -17.91176 -17.39007 -16.58606 -16.50926 -16.42340 -16.01073 -15.70396 -15.50166 -15.29053 -15.05274 -14.65293 -14.49668 -14.12178 -13.94053 -13.79242 -13.58781 -13.37965 -13.26375 -12.95492 -12.86763 -12.79457 -12.30663 -12.22190 -12.13602 -12.02226 -11.76996 -11.57363 -11.13015 -10.64760 -9.92217 -9.28681 -8.26217 -6.40084 -1.07324 -0.06730 0.01197 1.04089 1.40833 1.42719 1.53728 1.90777 2.14901 2.30259 2.37390 2.55782 2.91818 3.07465 3.11726 3.55040 3.63517 3.79726 3.90331 3.94090 3.97643 4.05009 4.14873 4.25034 4.47798 4.59765 4.64849 4.68400 4.82117 4.89611 5.03204 5.22916 5.24706 5.35396 5.67466 5.74141 6.05041 6.20629 6.72528 7.29850 8.86177 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.004668 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.881986 B = 5996.753952 C = 7658.917985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.024 3.976 10 C -0.610 4.610 11 S 2.600 3.400 12 O -0.970 6.970 13 O -0.975 6.975 14 O -0.657 6.657 15 C 0.045 3.955 16 C -0.094 4.094 17 C -0.095 4.095 18 C 0.068 3.932 19 C 0.061 3.939 20 C -0.135 4.135 21 O -0.316 6.316 22 C 0.008 3.992 23 C 0.015 3.985 24 O -0.309 6.309 25 H 0.268 0.732 26 H 0.011 0.989 27 H 0.013 0.987 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.958 -14.901 11.707 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.014 4.014 10 C -0.740 4.740 11 S 2.700 3.300 12 O -0.968 6.968 13 O -0.973 6.973 14 O -0.616 6.616 15 C 0.003 3.997 16 C -0.114 4.114 17 C -0.113 4.113 18 C 0.021 3.979 19 C 0.015 3.985 20 C -0.155 4.155 21 O -0.231 6.231 22 C -0.067 4.067 23 C -0.060 4.060 24 O -0.223 6.223 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.160 0.840 29 H 0.166 0.834 30 H 0.178 0.822 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 15.353 -15.390 11.550 24.616 hybrid contribution 0.293 1.584 -0.416 1.663 sum 15.646 -13.806 11.134 23.651 Atomic orbital electron populations 1.70093 1.08013 1.28363 1.50746 1.26083 0.95846 1.03749 0.94307 0.85320 0.78637 0.77702 0.78642 1.19629 1.20719 1.18225 1.21483 0.93948 0.90686 1.51727 0.90708 1.18805 0.93311 0.92479 0.96819 1.30603 1.13494 1.17276 1.12626 1.05269 0.74907 0.76431 0.73387 1.93537 1.71691 1.85018 1.46559 1.93546 1.73460 1.84041 1.46293 1.85731 1.64309 1.70350 1.41220 1.17832 0.96144 1.03331 0.82364 1.21347 1.00594 0.97253 0.92193 1.20596 0.94087 1.00125 0.96491 1.19157 0.96122 0.95791 0.86812 1.18447 0.91152 0.94186 0.94666 1.20656 0.94844 1.02204 0.97827 1.86325 1.39874 1.67235 1.29626 1.24122 1.05309 0.98147 0.79073 1.24084 0.80714 0.94451 1.06721 1.86363 1.30177 1.77992 1.27749 0.92333 0.97110 0.96907 0.84004 0.83396 0.82170 0.80296 0.82022 0.82332 0.90165 0.89123 0.82166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.29 4.98 29.85 0.15 1.44 16 10 C -0.61 -24.30 5.40 71.98 0.39 -23.92 16 11 S 2.60 101.36 5.17 -56.49 -0.29 101.07 16 12 O -0.97 -43.92 18.09 -118.57 -2.15 -46.06 16 13 O -0.97 -40.73 16.26 -118.57 -1.93 -42.66 16 14 O -0.66 -21.61 10.05 -62.27 -0.63 -22.24 16 15 C 0.05 1.34 4.79 22.47 0.11 1.45 16 16 C -0.09 -2.40 9.04 22.37 0.20 -2.20 16 17 C -0.09 -2.01 9.96 22.36 0.22 -1.79 16 18 C 0.07 1.52 6.49 22.55 0.15 1.67 16 19 C 0.06 1.52 6.49 22.55 0.15 1.67 16 20 C -0.13 -3.68 8.37 22.47 0.19 -3.49 16 21 O -0.32 -6.89 10.42 -82.64 -0.86 -7.75 16 22 C 0.01 0.10 7.26 72.14 0.52 0.62 16 23 C 0.01 0.14 7.26 72.14 0.52 0.67 16 24 O -0.31 -5.53 10.42 -83.77 -0.87 -6.40 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.14 5.04 6.60 -2.39 -0.02 5.03 16 29 H 0.15 5.17 8.14 -2.39 -0.02 5.15 16 30 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.16 4.01 7.49 -2.91 -0.02 3.99 16 33 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -78.17 322.42 -0.01 -78.19 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.11 Total: 10.26 kcal Atomic # 6 Polarization: -56.62 SS G_CDS: 3.29 Total: -53.32 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.28 Total: -56.37 kcal Atomic # 8 Polarization: -118.68 SS G_CDS: -6.43 Total: -125.11 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 101.36 SS G_CDS: -0.29 Total: 101.07 kcal Total: -78.17 -0.01 -78.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732215595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.377 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds