Wall clock time and date at job start Tue Mar 31 2020 10:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86797 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47078 * 274.65130 * 3 2 1 5 5 H 1.48504 * 109.47309 * 34.65206 * 3 2 1 6 6 H 1.48503 * 109.47153 * 154.65543 * 3 2 1 7 7 C 1.39889 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 162.15790 * 7 2 1 9 9 C 1.41212 * 120.00113 * 342.16581 * 7 2 1 10 10 C 1.40841 * 120.17928 * 155.14168 * 9 7 2 11 11 C 1.36439 * 119.81064 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18610 * 359.97438 * 11 10 9 13 13 O 1.35677 * 119.82037 * 179.97438 * 12 11 10 14 14 S 1.52199 * 114.00248 * 89.99638 * 13 12 11 15 15 O 1.42092 * 104.27771 * 191.07328 * 14 13 12 16 16 O 1.42108 * 104.27572 * 318.93349 * 14 13 12 17 17 C 1.81397 * 104.44758 * 75.00198 * 14 13 12 18 18 C 1.53001 * 109.47062 * 180.02562 * 17 14 13 19 19 C 1.52996 * 109.47085 * 180.02562 * 18 17 14 20 20 C 1.50706 * 109.47406 * 180.02562 * 19 18 17 21 21 O 1.20825 * 119.99610 * 359.97438 * 20 19 18 22 22 O 1.34220 * 120.00283 * 180.02562 * 20 19 18 23 23 C 1.39315 * 120.36247 * 0.25258 * 12 11 10 24 24 C 1.36434 * 120.18715 * 359.49052 * 23 12 11 25 25 H 0.96996 * 120.00082 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.09229 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.90762 * 179.97438 * 11 10 9 28 28 H 1.08999 * 109.47533 * 300.00157 * 17 14 13 29 29 H 1.09005 * 109.47387 * 60.00128 * 17 14 13 30 30 H 1.08999 * 109.46973 * 299.99878 * 18 17 14 31 31 H 1.08996 * 109.47002 * 60.00093 * 18 17 14 32 32 H 1.08999 * 109.47402 * 300.00071 * 19 18 17 33 33 H 1.09005 * 109.47495 * 60.00028 * 19 18 17 34 34 H 0.96701 * 116.99819 * 179.97438 * 22 20 19 35 35 H 1.08008 * 119.90418 * 179.72269 * 23 12 11 36 36 H 1.07999 * 120.09851 * 180.25710 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4929 2.6223 0.7961 6 1 3.5862 1.4137 0.5993 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2342 -0.2860 9 6 1.3531 -2.4049 0.3756 10 6 1.8226 -3.6475 -0.0924 11 6 1.1836 -4.7958 0.2743 12 6 0.0700 -4.7417 1.1096 13 8 -0.5601 -5.8882 1.4691 14 16 -0.0191 -6.5182 2.7446 15 8 -0.6222 -7.8042 2.7834 16 8 1.3904 -6.3729 2.6366 17 6 -0.6667 -5.4709 4.0767 18 6 -0.1860 -6.0073 5.4265 19 6 -0.7327 -5.1244 6.5501 20 6 -0.2588 -5.6523 7.8797 21 8 0.4438 -6.6343 7.9241 22 8 -0.6179 -5.0322 9.0146 23 6 -0.4036 -3.5162 1.5731 24 6 0.2270 -2.3590 1.2201 25 1 -0.4850 0.8400 -0.0004 26 1 2.6855 -3.6912 -0.7404 27 1 1.5420 -5.7495 -0.0841 28 1 -0.3083 -4.4502 3.9433 29 1 -1.7563 -5.4799 4.0489 30 1 -0.5441 -7.0281 5.5602 31 1 0.9036 -5.9979 5.4541 32 1 -0.3751 -4.1034 6.4166 33 1 -1.8224 -5.1342 6.5224 34 1 -0.2897 -5.4080 9.8430 35 1 -1.2703 -3.4825 2.2168 36 1 -0.1389 -1.4102 1.5836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738425341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:38 Heat of formation + Delta-G solvation = -194.750249 kcal Electronic energy + Delta-G solvation = -23644.977612 eV Core-core repulsion = 19800.294945 eV Total energy + Delta-G solvation = -3844.682667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46546 -39.83482 -37.04930 -36.57147 -36.51799 -35.49831 -34.87644 -33.82485 -30.12022 -29.55334 -28.93589 -25.54383 -23.65722 -21.98723 -21.48193 -20.91019 -19.52514 -18.33060 -17.87845 -17.63371 -17.03191 -16.88385 -16.48939 -16.11784 -15.63142 -15.13576 -14.50469 -14.34422 -14.11421 -13.48881 -13.13232 -12.96313 -12.67768 -12.51721 -12.33213 -12.18822 -12.13561 -11.99378 -11.76453 -11.61619 -11.51798 -11.45792 -11.32184 -11.14460 -11.05795 -10.87308 -10.68364 -10.32231 -10.20288 -9.68632 -9.45417 -7.97789 -7.68818 -7.19835 -4.74640 0.68281 1.97349 2.28122 2.75221 2.76837 2.84914 2.87529 2.93478 3.08057 3.63868 4.13621 4.18880 4.44801 4.48376 4.67932 4.78198 5.12409 5.17479 5.28909 5.35373 5.51858 5.69891 5.82073 5.90926 6.00373 6.10060 6.24777 6.61166 6.65613 6.80468 6.87703 7.19113 7.52126 7.54685 7.64058 7.65266 7.84039 8.18716 8.43974 8.52274 9.72598 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.003832 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.595356 B = 7304.457814 C = 8800.443727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.430 4.430 8 H 0.089 0.911 9 C 0.121 3.879 10 C -0.217 4.217 11 C -0.041 4.041 12 C -0.104 4.104 13 O -0.639 6.639 14 S 2.572 3.428 15 O -0.961 6.961 16 O -0.956 6.956 17 C -0.661 4.661 18 C -0.098 4.098 19 C -0.107 4.107 20 C 0.478 3.522 21 O -0.514 6.514 22 O -0.519 6.519 23 C -0.097 4.097 24 C -0.156 4.156 25 H 0.289 0.711 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.409 0.591 35 H 0.104 0.896 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -1.008 10.470 10.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.458 4.458 8 H 0.107 0.893 9 C 0.116 3.884 10 C -0.237 4.237 11 C -0.061 4.061 12 C -0.149 4.149 13 O -0.598 6.598 14 S 2.670 3.330 15 O -0.959 6.959 16 O -0.954 6.954 17 C -0.785 4.785 18 C -0.137 4.137 19 C -0.145 4.145 20 C 0.320 3.680 21 O -0.402 6.402 22 O -0.331 6.331 23 C -0.118 4.118 24 C -0.177 4.177 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.268 0.732 35 H 0.122 0.878 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.914 -1.661 9.742 10.303 hybrid contribution 0.014 0.875 1.035 1.355 sum -2.900 -0.786 10.776 11.187 Atomic orbital electron populations 1.69822 1.07869 1.30389 1.31161 1.26117 0.94894 1.02126 0.91841 0.86148 0.80830 0.79577 0.79535 1.19114 1.19643 1.17939 1.19859 0.98584 0.91052 1.36282 0.89259 1.17819 0.90622 0.92351 0.87560 1.20646 1.04025 0.91976 1.07074 1.20378 0.92746 0.98262 0.94753 1.17572 1.01731 0.79775 1.15872 1.85633 1.70797 1.46245 1.57160 1.06839 0.74856 0.75537 0.75733 1.93533 1.78628 1.38004 1.85735 1.93583 1.32115 1.86281 1.83427 1.30937 1.13297 1.18729 1.15516 1.21073 1.02673 0.99668 0.90237 1.21371 1.03814 1.02220 0.87127 1.23602 0.76933 0.80966 0.86502 1.90750 1.35517 1.26083 1.87850 1.84543 1.72121 1.58654 1.17739 1.20525 0.98819 0.91579 1.00878 1.20950 0.99101 0.96470 1.01132 0.89977 0.87409 0.87745 0.84094 0.84998 0.89644 0.89266 0.86796 0.87092 0.73178 0.87804 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.15 10.98 55.54 0.61 -16.54 16 2 C 0.07 1.56 5.13 -17.34 -0.09 1.47 16 3 Si 0.92 16.09 29.59 -169.99 -5.03 11.06 16 4 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 6 H -0.26 -4.50 7.11 56.52 0.40 -4.09 16 7 C -0.43 -9.92 9.04 -37.84 -0.34 -10.26 16 8 H 0.09 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.12 2.86 5.57 -106.80 -0.59 2.26 16 10 C -0.22 -4.92 9.74 -39.25 -0.38 -5.30 16 11 C -0.04 -0.91 8.97 -39.83 -0.36 -1.27 16 12 C -0.10 -2.26 4.82 -38.78 -0.19 -2.44 16 13 O -0.64 -12.80 10.03 -51.06 -0.51 -13.31 16 14 S 2.57 46.58 5.17 -107.50 -0.56 46.03 16 15 O -0.96 -19.38 18.09 -67.04 -1.21 -20.59 16 16 O -0.96 -20.00 16.25 -67.04 -1.09 -21.09 16 17 C -0.66 -8.67 5.46 37.16 0.20 -8.47 16 18 C -0.10 -1.20 4.51 -26.73 -0.12 -1.32 16 19 C -0.11 -1.01 5.81 -27.88 -0.16 -1.17 16 20 C 0.48 5.08 8.33 36.01 0.30 5.38 16 21 O -0.51 -7.23 16.74 -18.75 -0.31 -7.55 16 22 O -0.52 -4.15 13.42 -39.23 -0.53 -4.67 16 23 C -0.10 -2.01 8.38 -39.83 -0.33 -2.35 16 24 C -0.16 -3.54 8.64 -39.25 -0.34 -3.88 16 25 H 0.29 5.77 8.30 -40.82 -0.34 5.43 16 26 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 27 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.14 1.79 6.61 -51.92 -0.34 1.44 16 29 H 0.13 1.38 8.14 -51.92 -0.42 0.96 16 30 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 1.59 9.10 45.56 0.41 2.01 16 35 H 0.10 1.77 7.51 -52.48 -0.39 1.38 16 36 H 0.13 2.90 6.18 -52.49 -0.32 2.58 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -31.31 328.36 -9.24 -40.55 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.15 Total: 8.51 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -2.41 Total: -27.35 kcal Atomic # 7 Polarization: -17.15 SS G_CDS: 0.61 Total: -16.54 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -3.65 Total: -67.20 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Atomic # 16 Polarization: 46.58 SS G_CDS: -0.56 Total: 46.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.31 -9.24 -40.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.197 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds