Wall clock time and date at job start Tue Mar 31 2020 10:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86797 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47078 * 274.65130 * 3 2 1 5 5 H 1.48504 * 109.47309 * 34.65206 * 3 2 1 6 6 H 1.48503 * 109.47153 * 154.65543 * 3 2 1 7 7 C 1.39889 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 162.15790 * 7 2 1 9 9 C 1.41212 * 120.00113 * 342.16581 * 7 2 1 10 10 C 1.40841 * 120.17928 * 155.14168 * 9 7 2 11 11 C 1.36439 * 119.81064 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18610 * 359.97438 * 11 10 9 13 13 O 1.35677 * 119.82037 * 179.97438 * 12 11 10 14 14 S 1.52199 * 114.00248 * 89.99638 * 13 12 11 15 15 O 1.42092 * 104.27771 * 191.07328 * 14 13 12 16 16 O 1.42108 * 104.27572 * 318.93349 * 14 13 12 17 17 C 1.81397 * 104.44758 * 75.00198 * 14 13 12 18 18 C 1.53001 * 109.47062 * 180.02562 * 17 14 13 19 19 C 1.52996 * 109.47085 * 180.02562 * 18 17 14 20 20 C 1.50706 * 109.47406 * 180.02562 * 19 18 17 21 21 O 1.20825 * 119.99610 * 359.97438 * 20 19 18 22 22 O 1.34220 * 120.00283 * 180.02562 * 20 19 18 23 23 C 1.39315 * 120.36247 * 0.25258 * 12 11 10 24 24 C 1.36434 * 120.18715 * 359.49052 * 23 12 11 25 25 H 0.96996 * 120.00082 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.09229 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.90762 * 179.97438 * 11 10 9 28 28 H 1.08999 * 109.47533 * 300.00157 * 17 14 13 29 29 H 1.09005 * 109.47387 * 60.00128 * 17 14 13 30 30 H 1.08999 * 109.46973 * 299.99878 * 18 17 14 31 31 H 1.08996 * 109.47002 * 60.00093 * 18 17 14 32 32 H 1.08999 * 109.47402 * 300.00071 * 19 18 17 33 33 H 1.09005 * 109.47495 * 60.00028 * 19 18 17 34 34 H 0.96701 * 116.99819 * 179.97438 * 22 20 19 35 35 H 1.08008 * 119.90418 * 179.72269 * 23 12 11 36 36 H 1.07999 * 120.09851 * 180.25710 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4929 2.6223 0.7961 6 1 3.5862 1.4137 0.5993 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2342 -0.2860 9 6 1.3531 -2.4049 0.3756 10 6 1.8226 -3.6475 -0.0924 11 6 1.1836 -4.7958 0.2743 12 6 0.0700 -4.7417 1.1096 13 8 -0.5601 -5.8882 1.4691 14 16 -0.0191 -6.5182 2.7446 15 8 -0.6222 -7.8042 2.7834 16 8 1.3904 -6.3729 2.6366 17 6 -0.6667 -5.4709 4.0767 18 6 -0.1860 -6.0073 5.4265 19 6 -0.7327 -5.1244 6.5501 20 6 -0.2588 -5.6523 7.8797 21 8 0.4438 -6.6343 7.9241 22 8 -0.6179 -5.0322 9.0146 23 6 -0.4036 -3.5162 1.5731 24 6 0.2270 -2.3590 1.2201 25 1 -0.4850 0.8400 -0.0004 26 1 2.6855 -3.6912 -0.7404 27 1 1.5420 -5.7495 -0.0841 28 1 -0.3083 -4.4502 3.9433 29 1 -1.7563 -5.4799 4.0489 30 1 -0.5441 -7.0281 5.5602 31 1 0.9036 -5.9979 5.4541 32 1 -0.3751 -4.1034 6.4166 33 1 -1.8224 -5.1342 6.5224 34 1 -0.2897 -5.4080 9.8430 35 1 -1.2703 -3.4825 2.2168 36 1 -0.1389 -1.4102 1.5836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738425341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:37 Heat of formation + Delta-G solvation = -216.074709 kcal Electronic energy + Delta-G solvation = -23645.902310 eV Core-core repulsion = 19800.294945 eV Total energy + Delta-G solvation = -3845.607365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.075 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44723 -41.25895 -38.70603 -38.13021 -37.26800 -37.04607 -35.84764 -35.46063 -31.77310 -31.24641 -29.90285 -27.22224 -24.66806 -23.62515 -23.03541 -21.82116 -21.05303 -19.48456 -19.23041 -19.06259 -18.40082 -18.21527 -17.39035 -17.30694 -17.09995 -16.35667 -15.97233 -15.86902 -15.46586 -14.68938 -14.33484 -14.18655 -14.02156 -13.93523 -13.79871 -13.70985 -13.49217 -13.18271 -13.14464 -13.05284 -12.95842 -12.79117 -12.57830 -12.54855 -12.30378 -12.02542 -11.81343 -11.76360 -11.51808 -11.31715 -11.06307 -9.67935 -9.40506 -8.80603 -6.47290 -0.74329 0.65208 1.03167 1.19931 1.41133 1.44490 1.53486 1.59661 2.11165 2.18995 2.55052 2.77824 3.20348 3.52413 3.53879 3.72038 3.78816 4.22714 4.24393 4.29663 4.40613 4.49761 4.57542 4.67952 4.81944 4.92316 4.97025 5.00187 5.11146 5.21090 5.50179 5.62006 5.80985 5.83425 5.94524 6.15702 6.48937 6.74642 6.81829 6.98368 8.15293 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.003832 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.595356 B = 7304.457814 C = 8800.443727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.040 3.960 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.088 0.912 9 C 0.094 3.906 10 C -0.233 4.233 11 C -0.061 4.061 12 C -0.109 4.109 13 O -0.651 6.651 14 S 2.574 3.426 15 O -0.986 6.986 16 O -0.992 6.992 17 C -0.630 4.630 18 C -0.108 4.108 19 C -0.105 4.105 20 C 0.482 3.518 21 O -0.558 6.558 22 O -0.511 6.511 23 C -0.091 4.091 24 C -0.173 4.173 25 H 0.299 0.701 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.155 0.845 29 H 0.172 0.828 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.427 0.573 35 H 0.145 0.855 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 0.522 12.281 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.106 0.894 9 C 0.090 3.910 10 C -0.253 4.253 11 C -0.081 4.081 12 C -0.153 4.153 13 O -0.610 6.610 14 S 2.677 3.323 15 O -0.984 6.984 16 O -0.990 6.990 17 C -0.760 4.760 18 C -0.146 4.146 19 C -0.143 4.143 20 C 0.327 3.673 21 O -0.450 6.450 22 O -0.324 6.324 23 C -0.111 4.111 24 C -0.193 4.193 25 H 0.110 0.890 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.173 0.827 29 H 0.190 0.810 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.289 0.711 35 H 0.163 0.837 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.349 -0.137 11.496 12.292 hybrid contribution 0.365 0.260 0.619 0.764 sum -3.985 0.123 12.115 12.754 Atomic orbital electron populations 1.69829 1.09008 1.31804 1.31314 1.26842 0.95548 1.04678 0.90843 0.85117 0.79317 0.75459 0.79537 1.18847 1.18529 1.18132 1.20091 0.98904 0.92044 1.37994 0.89351 1.18162 0.91610 0.92858 0.88350 1.20805 1.04682 0.92155 1.07693 1.20611 0.93619 0.98402 0.95483 1.17681 1.01280 0.80666 1.15670 1.85521 1.70613 1.45906 1.59002 1.06232 0.74069 0.75556 0.76483 1.93506 1.78687 1.39792 1.86423 1.93552 1.34167 1.86807 1.84492 1.30619 1.15530 1.17142 1.12685 1.21154 1.02238 1.00527 0.90730 1.21407 1.05576 1.02103 0.85199 1.23799 0.75910 0.80150 0.87466 1.90748 1.37615 1.28101 1.88493 1.84498 1.71629 1.58165 1.18147 1.20823 0.99413 0.90279 1.00576 1.21010 0.99460 0.97130 1.01657 0.88990 0.86852 0.87346 0.82731 0.80987 0.89774 0.90574 0.84835 0.83971 0.71091 0.83734 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.16 10.98 21.82 0.24 -34.92 16 2 C 0.04 1.73 5.13 85.23 0.44 2.17 16 3 Si 0.99 32.34 29.59 68.60 2.03 34.37 16 4 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 5 H -0.26 -8.06 7.11 99.48 0.71 -7.35 16 6 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 7 C -0.46 -21.76 9.04 23.40 0.21 -21.55 16 8 H 0.09 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.09 4.55 5.57 -21.28 -0.12 4.43 16 10 C -0.23 -10.93 9.74 22.49 0.22 -10.71 16 11 C -0.06 -2.77 8.97 22.11 0.20 -2.58 16 12 C -0.11 -4.67 4.82 22.79 0.11 -4.56 16 13 O -0.65 -25.51 10.03 -59.04 -0.59 -26.10 16 14 S 2.57 90.84 5.17 -56.49 -0.29 90.55 16 15 O -0.99 -39.19 18.09 -118.57 -2.15 -41.34 16 16 O -0.99 -41.91 16.25 -118.57 -1.93 -43.84 16 17 C -0.63 -14.32 5.46 71.98 0.39 -13.93 16 18 C -0.11 -2.35 4.51 30.59 0.14 -2.21 16 19 C -0.10 -1.56 5.81 29.85 0.17 -1.39 16 20 C 0.48 8.99 8.33 71.24 0.59 9.59 16 21 O -0.56 -15.05 16.74 21.97 0.37 -14.68 16 22 O -0.51 -6.57 13.42 -51.32 -0.69 -7.26 16 23 C -0.09 -3.61 8.38 22.11 0.19 -3.42 16 24 C -0.17 -7.76 8.64 22.48 0.19 -7.56 16 25 H 0.30 11.66 8.30 -92.71 -0.77 10.89 16 26 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 27 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.15 3.28 6.61 -2.39 -0.02 3.26 16 29 H 0.17 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 31 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.14 1.28 8.14 -2.38 -0.02 1.27 16 34 H 0.43 2.18 9.10 -74.06 -0.67 1.51 16 35 H 0.15 4.40 7.51 -2.91 -0.02 4.37 16 36 H 0.13 5.69 6.18 -2.91 -0.02 5.67 16 Total: -1.00 -69.61 328.36 0.18 -69.43 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.45 Total: 25.52 kcal Atomic # 6 Polarization: -54.47 SS G_CDS: 2.73 Total: -51.73 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.24 Total: -34.92 kcal Atomic # 8 Polarization: -128.23 SS G_CDS: -4.99 Total: -133.22 kcal Atomic # 14 Polarization: 32.34 SS G_CDS: 2.03 Total: 34.37 kcal Atomic # 16 Polarization: 90.84 SS G_CDS: -0.29 Total: 90.55 kcal Total: -69.61 0.18 -69.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.645 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds