Wall clock time and date at job start Tue Mar 31 2020 10:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48500 * 109.46729 * 269.03050 * 3 2 1 5 5 H 1.48496 * 109.47299 * 29.02973 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.03392 * 3 2 1 7 7 C 1.40037 * 119.99522 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00214 * 354.00945 * 7 2 1 9 9 C 1.41545 * 119.99650 * 174.00886 * 7 2 1 10 10 C 1.41168 * 120.99472 * 144.36305 * 9 7 2 11 11 C 1.36590 * 119.13016 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26815 * 359.97438 * 11 10 9 13 13 C 1.32508 * 122.22490 * 0.02562 * 12 11 10 14 14 N 1.39343 * 119.65254 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00283 * 354.75293 * 14 13 12 16 16 O 1.21763 * 119.99495 * 4.58572 * 15 14 13 17 17 C 1.46202 * 120.00187 * 184.59501 * 15 14 13 18 18 C 1.33516 * 122.21243 * 185.31887 * 17 15 14 19 19 S 1.75724 * 109.85664 * 179.91644 * 18 17 15 20 20 C 1.75941 * 91.05613 * 0.28056 * 19 18 17 21 21 C 1.36291 * 142.79824 * 179.85011 * 20 19 18 22 22 N 1.33743 * 107.81925 * 179.97438 * 21 20 19 23 23 C 1.30350 * 109.46077 * 0.02562 * 22 21 20 24 24 N 1.35928 * 109.82232 * 359.85454 * 20 19 18 25 25 C 1.38681 * 120.69768 * 0.02562 * 13 12 11 26 26 H 0.96996 * 119.99984 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.43485 * 359.97438 * 10 9 7 28 28 H 1.08009 * 119.36741 * 179.97438 * 11 10 9 29 29 H 0.97006 * 120.00261 * 174.75211 * 14 13 12 30 30 H 1.08003 * 125.07541 * 0.02562 * 18 17 15 31 31 H 1.07997 * 126.09102 * 0.02562 * 21 20 19 32 32 H 1.08009 * 125.57270 * 180.02562 * 23 22 21 33 33 H 1.08000 * 120.66695 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.5095 2.0344 -1.3999 5 1 1.4289 2.6585 0.6794 6 1 3.5287 1.4460 0.7204 7 6 2.0075 -1.2128 0.0005 8 1 1.4719 -2.1454 0.0986 9 6 3.4172 -1.2163 -0.1274 10 6 4.2072 -2.1630 0.5598 11 6 5.5644 -2.1313 0.4092 12 7 6.1473 -1.2344 -0.3653 13 6 5.4566 -0.3223 -1.0338 14 7 6.1270 0.5986 -1.8364 15 6 7.4744 0.6275 -1.8480 16 8 8.1065 -0.2043 -1.2226 17 6 8.1770 1.6577 -2.6112 18 6 9.5060 1.6668 -2.7388 19 16 10.0023 3.0389 -3.7181 20 6 8.3298 3.5523 -3.9044 21 6 7.5452 4.5094 -4.4753 22 7 6.2733 4.2331 -4.1676 23 6 6.2278 3.1555 -3.4356 24 7 7.5078 2.6933 -3.2456 25 6 4.0736 -0.2747 -0.9432 26 1 -0.4850 0.8400 0.0004 27 1 3.7446 -2.9022 1.1970 28 1 6.1726 -2.8536 0.9336 29 1 5.6239 1.2190 -2.3869 30 1 10.1761 0.9385 -2.3062 31 1 7.8892 5.3421 -5.0708 32 1 5.3306 2.7000 -3.0430 33 1 3.5111 0.4686 -1.4886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764205146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:19 Heat of formation + Delta-G solvation = 115.994633 kcal Electronic energy + Delta-G solvation = -22671.193839 eV Core-core repulsion = 19211.880503 eV Total energy + Delta-G solvation = -3459.313336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.05125 -40.17901 -38.47612 -36.37719 -34.84440 -33.94993 -31.46158 -30.68659 -30.11187 -29.11508 -26.22860 -25.25869 -22.95381 -22.54799 -22.05925 -20.93989 -20.49192 -18.96927 -17.90479 -17.19248 -16.49026 -16.17435 -15.73231 -15.53676 -15.19940 -14.91626 -14.76159 -14.38622 -14.13641 -13.79603 -13.75288 -13.23128 -13.09830 -12.90929 -12.18504 -11.82313 -11.70106 -11.12182 -11.02976 -10.75246 -10.68168 -10.55471 -10.33154 -10.29496 -9.95972 -9.71471 -9.47094 -8.35021 -8.14190 -7.81067 -7.51629 -7.09464 -4.84685 0.29781 0.73806 1.16204 1.43877 2.11697 2.19616 2.47421 2.66301 2.90986 3.01159 3.04028 3.14524 3.22844 3.80109 4.03756 4.22631 4.46850 4.53186 4.79046 5.00536 5.15361 5.20785 5.49791 5.54984 5.96336 6.04575 6.08548 6.24316 6.38090 6.59035 6.83195 6.88320 7.02752 7.29118 7.46116 7.51461 7.75790 8.04709 8.16990 8.31503 8.55164 9.19269 9.92317 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.004485 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.956035 B = 6241.789210 C = 7673.270977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.439 4.439 8 H 0.098 0.902 9 C 0.130 3.870 10 C -0.259 4.259 11 C 0.127 3.873 12 N -0.553 5.553 13 C 0.362 3.638 14 N -0.655 5.655 15 C 0.567 3.433 16 O -0.449 6.449 17 C 0.029 3.971 18 C -0.137 4.137 19 S 0.176 5.824 20 C -0.097 4.097 21 C 0.023 3.977 22 N -0.441 5.441 23 C 0.188 3.812 24 N -0.399 5.399 25 C -0.312 4.312 26 H 0.289 0.711 27 H 0.114 0.886 28 H 0.133 0.867 29 H 0.403 0.597 30 H 0.205 0.795 31 H 0.185 0.815 32 H 0.212 0.788 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.808 7.739 -7.007 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.470 4.470 8 H 0.116 0.884 9 C 0.121 3.879 10 C -0.282 4.282 11 C -0.024 4.024 12 N -0.272 5.272 13 C 0.135 3.865 14 N -0.303 5.303 15 C 0.348 3.652 16 O -0.317 6.317 17 C -0.085 4.085 18 C -0.277 4.277 19 S 0.435 5.565 20 C -0.322 4.322 21 C -0.135 4.135 22 N -0.155 5.155 23 C -0.094 4.094 24 N -0.080 5.080 25 C -0.337 4.337 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.241 0.759 30 H 0.222 0.778 31 H 0.202 0.798 32 H 0.228 0.772 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.541 8.076 -7.247 19.783 hybrid contribution -1.777 0.137 0.474 1.844 sum 14.764 8.213 -6.774 18.202 Atomic orbital electron populations 1.69563 1.07890 1.30544 1.34953 1.26124 0.94904 1.01522 0.90937 0.86327 0.80829 0.79675 0.79348 1.19468 1.21505 1.16899 1.19505 0.89482 0.95558 1.42426 0.88415 1.17735 0.93836 0.89139 0.87154 1.21802 0.94247 1.05829 1.06357 1.21656 0.92369 0.94396 0.93963 1.67271 1.38984 1.07036 1.13918 1.17921 0.87709 0.89457 0.91375 1.43545 1.06037 1.36243 1.44451 1.17018 0.82445 0.83891 0.81800 1.91002 1.65482 1.35898 1.39364 1.19387 0.92361 0.92906 1.03823 1.25802 0.96104 1.03317 1.02437 1.84504 0.97558 1.21185 1.53229 1.24591 0.96258 1.01382 1.09977 1.21839 0.86556 1.00106 1.05040 1.70179 1.20443 1.12065 1.12847 1.25281 0.85355 0.95292 1.03520 1.44267 1.08424 1.18961 1.36352 1.21334 0.91822 1.09617 1.10934 0.90060 0.86796 0.84958 0.75949 0.77764 0.79797 0.77210 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.41 13.92 55.55 0.77 -19.64 16 2 C 0.09 2.11 5.51 -17.34 -0.10 2.02 16 3 Si 0.91 19.67 24.45 -169.99 -4.16 15.51 16 4 H -0.27 -5.37 6.66 56.52 0.38 -4.99 16 5 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.25 -5.54 6.60 56.52 0.37 -5.17 16 7 C -0.44 -11.20 9.68 -37.65 -0.36 -11.56 16 8 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.13 3.13 5.11 -106.55 -0.54 2.58 16 10 C -0.26 -5.73 9.85 -39.07 -0.38 -6.11 16 11 C 0.13 2.71 11.10 -18.05 -0.20 2.51 16 12 N -0.55 -12.62 7.85 -12.77 -0.10 -12.72 16 13 C 0.36 7.94 7.42 -154.76 -1.15 6.79 16 14 N -0.65 -11.88 5.36 -12.80 -0.07 -11.95 16 15 C 0.57 9.82 7.70 -13.06 -0.10 9.72 16 16 O -0.45 -9.02 14.85 5.13 0.08 -8.94 16 17 C 0.03 0.39 6.69 -83.23 -0.56 -0.17 16 18 C -0.14 -1.47 10.63 29.08 0.31 -1.16 16 19 S 0.18 1.55 23.33 -107.50 -2.51 -0.95 16 20 C -0.10 -1.14 7.81 -16.44 -0.13 -1.26 16 21 C 0.02 0.26 11.93 -17.42 -0.21 0.06 16 22 N -0.44 -6.01 11.21 -13.83 -0.16 -6.17 16 23 C 0.19 2.50 11.90 -88.30 -1.05 1.45 16 24 N -0.40 -5.28 3.20 -60.40 -0.19 -5.48 16 25 C -0.31 -7.09 6.87 -38.44 -0.26 -7.35 16 26 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 27 H 0.11 2.31 8.06 -52.49 -0.42 1.88 16 28 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 29 H 0.40 6.20 5.11 -40.82 -0.21 6.00 16 30 H 0.21 1.83 7.94 -52.48 -0.42 1.42 16 31 H 0.18 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.21 2.47 6.09 -52.48 -0.32 2.15 16 33 H 0.11 2.39 4.60 -52.49 -0.24 2.14 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -30.41 301.00 -8.60 -39.01 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.06 Total: 9.29 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -4.74 Total: -2.49 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.26 Total: -55.95 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.16 Total: 15.51 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.95 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.41 -8.60 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764205146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.001 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds