Wall clock time and date at job start Tue Mar 31 2020 10:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48500 * 109.46729 * 269.03050 * 3 2 1 5 5 H 1.48496 * 109.47299 * 29.02973 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.03392 * 3 2 1 7 7 C 1.40037 * 119.99522 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00214 * 354.00945 * 7 2 1 9 9 C 1.41545 * 119.99650 * 174.00886 * 7 2 1 10 10 C 1.41168 * 120.99472 * 144.36305 * 9 7 2 11 11 C 1.36590 * 119.13016 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26815 * 359.97438 * 11 10 9 13 13 C 1.32508 * 122.22490 * 0.02562 * 12 11 10 14 14 N 1.39343 * 119.65254 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00283 * 354.75293 * 14 13 12 16 16 O 1.21763 * 119.99495 * 4.58572 * 15 14 13 17 17 C 1.46202 * 120.00187 * 184.59501 * 15 14 13 18 18 C 1.33516 * 122.21243 * 185.31887 * 17 15 14 19 19 S 1.75724 * 109.85664 * 179.91644 * 18 17 15 20 20 C 1.75941 * 91.05613 * 0.28056 * 19 18 17 21 21 C 1.36291 * 142.79824 * 179.85011 * 20 19 18 22 22 N 1.33743 * 107.81925 * 179.97438 * 21 20 19 23 23 C 1.30350 * 109.46077 * 0.02562 * 22 21 20 24 24 N 1.35928 * 109.82232 * 359.85454 * 20 19 18 25 25 C 1.38681 * 120.69768 * 0.02562 * 13 12 11 26 26 H 0.96996 * 119.99984 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.43485 * 359.97438 * 10 9 7 28 28 H 1.08009 * 119.36741 * 179.97438 * 11 10 9 29 29 H 0.97006 * 120.00261 * 174.75211 * 14 13 12 30 30 H 1.08003 * 125.07541 * 0.02562 * 18 17 15 31 31 H 1.07997 * 126.09102 * 0.02562 * 21 20 19 32 32 H 1.08009 * 125.57270 * 180.02562 * 23 22 21 33 33 H 1.08000 * 120.66695 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.5095 2.0344 -1.3999 5 1 1.4289 2.6585 0.6794 6 1 3.5287 1.4460 0.7204 7 6 2.0075 -1.2128 0.0005 8 1 1.4719 -2.1454 0.0986 9 6 3.4172 -1.2163 -0.1274 10 6 4.2072 -2.1630 0.5598 11 6 5.5644 -2.1313 0.4092 12 7 6.1473 -1.2344 -0.3653 13 6 5.4566 -0.3223 -1.0338 14 7 6.1270 0.5986 -1.8364 15 6 7.4744 0.6275 -1.8480 16 8 8.1065 -0.2043 -1.2226 17 6 8.1770 1.6577 -2.6112 18 6 9.5060 1.6668 -2.7388 19 16 10.0023 3.0389 -3.7181 20 6 8.3298 3.5523 -3.9044 21 6 7.5452 4.5094 -4.4753 22 7 6.2733 4.2331 -4.1676 23 6 6.2278 3.1555 -3.4356 24 7 7.5078 2.6933 -3.2456 25 6 4.0736 -0.2747 -0.9432 26 1 -0.4850 0.8400 0.0004 27 1 3.7446 -2.9022 1.1970 28 1 6.1726 -2.8536 0.9336 29 1 5.6239 1.2190 -2.3869 30 1 10.1761 0.9385 -2.3062 31 1 7.8892 5.3421 -5.0708 32 1 5.3306 2.7000 -3.0430 33 1 3.5111 0.4686 -1.4886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764205146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:18 Heat of formation + Delta-G solvation = 97.904478 kcal Electronic energy + Delta-G solvation = -22671.978287 eV Core-core repulsion = 19211.880503 eV Total energy + Delta-G solvation = -3460.097784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.96825 -41.63505 -40.04368 -37.41235 -36.39222 -35.72821 -33.29103 -31.64509 -31.35240 -30.39587 -28.03579 -26.46089 -24.36654 -23.93822 -23.08291 -22.35698 -21.69080 -20.21190 -19.51223 -18.51143 -17.61476 -17.47750 -17.38382 -16.75390 -16.41836 -16.29958 -16.14726 -15.88687 -15.33824 -15.08051 -14.85760 -14.66641 -14.60745 -14.55404 -13.53547 -13.16869 -12.85802 -12.77056 -12.66311 -12.56370 -11.97537 -11.81557 -11.60419 -11.60348 -11.39002 -11.23484 -10.64181 -10.18520 -9.87407 -9.20986 -8.95924 -8.57864 -6.77993 -0.66766 -0.07561 0.28214 0.32238 0.63803 0.71589 1.18648 1.20237 1.33059 1.41282 1.67537 1.71279 1.91983 2.03347 2.63219 2.96378 3.33472 3.40531 3.57629 3.79104 4.00385 4.20162 4.30731 4.36736 4.44177 4.54006 4.60181 4.64549 5.07549 5.18206 5.20112 5.33507 5.56875 5.68218 5.87362 6.08990 6.19210 6.42866 6.56967 6.64734 6.74879 7.47758 8.11041 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.004485 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.956035 B = 6241.789210 C = 7673.270977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.054 3.946 3 Si 0.956 3.044 4 H -0.243 1.243 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.470 4.470 8 H 0.070 0.930 9 C 0.117 3.883 10 C -0.269 4.269 11 C 0.130 3.870 12 N -0.564 5.564 13 C 0.361 3.639 14 N -0.654 5.654 15 C 0.571 3.429 16 O -0.483 6.483 17 C -0.008 4.008 18 C -0.115 4.115 19 S 0.266 5.734 20 C -0.118 4.118 21 C 0.019 3.981 22 N -0.462 5.462 23 C 0.165 3.835 24 N -0.401 5.401 25 C -0.318 4.318 26 H 0.297 0.703 27 H 0.126 0.874 28 H 0.167 0.833 29 H 0.414 0.586 30 H 0.224 0.776 31 H 0.214 0.786 32 H 0.215 0.785 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.987 9.434 -8.082 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.163 4.163 3 Si 0.780 3.220 4 H -0.168 1.168 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.501 4.501 8 H 0.088 0.912 9 C 0.108 3.892 10 C -0.292 4.292 11 C -0.021 4.021 12 N -0.284 5.284 13 C 0.133 3.867 14 N -0.303 5.303 15 C 0.355 3.645 16 O -0.354 6.354 17 C -0.122 4.122 18 C -0.256 4.256 19 S 0.527 5.473 20 C -0.342 4.342 21 C -0.139 4.139 22 N -0.177 5.177 23 C -0.117 4.117 24 N -0.081 5.081 25 C -0.344 4.344 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.184 0.816 29 H 0.254 0.746 30 H 0.241 0.759 31 H 0.231 0.769 32 H 0.232 0.768 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.717 9.801 -8.364 23.554 hybrid contribution -2.490 -0.412 0.748 2.633 sum 17.226 9.389 -7.616 21.045 Atomic orbital electron populations 1.69590 1.08873 1.31749 1.36512 1.26712 0.95452 1.03770 0.90329 0.85644 0.78964 0.76788 0.80594 1.16773 1.20405 1.18578 1.19476 0.90395 0.95110 1.45116 0.91193 1.17913 0.93504 0.90217 0.87537 1.22012 0.94779 1.05827 1.06555 1.22189 0.92365 0.94337 0.93246 1.67425 1.39457 1.07380 1.14151 1.18118 0.87771 0.89608 0.91235 1.43573 1.06813 1.35764 1.44133 1.17392 0.81796 0.84089 0.81238 1.90969 1.65915 1.37565 1.40991 1.18869 0.92878 0.93633 1.06772 1.26301 0.95397 1.03672 1.00216 1.84327 0.94404 1.18138 1.50422 1.25130 0.98043 1.01243 1.09820 1.22388 0.85837 1.00776 1.04924 1.70161 1.21833 1.12387 1.13324 1.25405 0.85846 0.95900 1.04531 1.44239 1.08602 1.18964 1.36314 1.21425 0.92486 1.09576 1.10882 0.89186 0.85555 0.81560 0.74617 0.75934 0.76895 0.76843 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.82 13.92 21.84 0.30 -43.52 16 2 C 0.05 2.73 5.51 85.29 0.47 3.20 16 3 Si 0.96 40.40 24.45 68.60 1.68 42.08 16 4 H -0.24 -9.17 6.66 99.48 0.66 -8.51 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -11.65 6.60 99.48 0.66 -10.99 16 7 C -0.47 -24.91 9.68 23.52 0.23 -24.68 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 9 C 0.12 5.72 5.11 -21.11 -0.11 5.61 16 10 C -0.27 -11.90 9.85 22.60 0.22 -11.68 16 11 C 0.13 5.39 11.10 84.27 0.94 6.33 16 12 N -0.56 -25.27 7.85 -194.31 -1.53 -26.80 16 13 C 0.36 15.64 7.42 132.80 0.99 16.62 16 14 N -0.65 -23.26 5.36 -312.59 -1.68 -24.93 16 15 C 0.57 19.13 7.70 86.31 0.66 19.79 16 16 O -0.48 -18.88 14.85 -4.55 -0.07 -18.94 16 17 C -0.01 -0.20 6.69 39.06 0.26 0.06 16 18 C -0.12 -2.09 10.63 66.75 0.71 -1.38 16 19 S 0.27 3.55 23.33 -56.49 -1.32 2.23 16 20 C -0.12 -2.40 7.81 83.60 0.65 -1.75 16 21 C 0.02 0.39 11.93 83.95 1.00 1.39 16 22 N -0.46 -11.93 11.21 -197.66 -2.22 -14.15 16 23 C 0.16 4.22 11.90 179.54 2.14 6.35 16 24 N -0.40 -9.84 3.20 -345.02 -1.10 -10.94 16 25 C -0.32 -14.48 6.87 23.01 0.16 -14.32 16 26 H 0.30 13.92 8.29 -92.71 -0.77 13.15 16 27 H 0.13 5.15 8.06 -2.91 -0.02 5.12 16 28 H 0.17 5.63 8.06 -2.91 -0.02 5.60 16 29 H 0.41 12.49 5.11 -92.70 -0.47 12.02 16 30 H 0.22 3.15 7.94 -2.91 -0.02 3.13 16 31 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.22 4.93 6.09 -2.91 -0.02 4.92 16 33 H 0.12 5.05 4.60 -2.91 -0.01 5.04 16 Total: -1.00 -66.77 301.00 3.03 -63.74 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.64 Total: 25.69 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 8.32 Total: 5.54 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -6.22 Total: -120.34 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.07 Total: -18.94 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.68 Total: 42.08 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.32 Total: 2.23 kcal Total: -66.77 3.03 -63.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764205146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.649 kcal (2) G-P(sol) polarization free energy of solvation -66.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds