Wall clock time and date at job start Tue Mar 31 2020 11:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47229 * 270.00320 * 3 2 1 5 5 H 1.48500 * 109.47023 * 30.00596 * 3 2 1 6 6 H 1.48502 * 109.47265 * 150.00146 * 3 2 1 7 7 C 1.37876 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00185 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.53121 * 109.52106 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.27518 * 182.38073 * 10 9 7 12 12 N 1.46842 * 109.52641 * 59.17904 * 11 10 9 13 13 C 1.46899 * 111.00041 * 174.16189 * 12 11 10 14 14 C 1.50703 * 109.47107 * 169.99728 * 13 12 11 15 15 N 1.31893 * 119.61776 * 89.99850 * 14 13 12 16 16 C 1.31950 * 121.72093 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.62335 * 179.97438 * 16 15 14 18 18 C 1.38399 * 120.75495 * 359.97438 * 16 15 14 19 19 C 1.38550 * 119.16724 * 0.02562 * 18 16 15 20 20 C 1.38269 * 119.61777 * 269.72603 * 14 13 12 21 21 Cl 1.73601 * 120.41426 * 359.97438 * 20 14 13 22 22 C 1.46851 * 111.19561 * 298.25631 * 12 11 10 23 23 C 1.53039 * 109.52490 * 61.74256 * 22 12 11 24 24 H 0.96996 * 120.00279 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.52532 * 300.12803 * 9 7 2 26 26 H 1.08994 * 109.50961 * 62.43274 * 10 9 7 27 27 H 1.09008 * 109.53352 * 302.33693 * 10 9 7 28 28 H 1.08996 * 109.46118 * 299.15547 * 11 10 9 29 29 H 1.09007 * 109.45259 * 179.18590 * 11 10 9 30 30 H 1.09002 * 109.47043 * 289.99708 * 13 12 11 31 31 H 1.09001 * 109.47354 * 49.99769 * 13 12 11 32 32 H 1.08002 * 120.41641 * 179.97438 * 18 16 15 33 33 H 1.07995 * 120.78533 * 179.97438 * 19 18 16 34 34 H 1.08996 * 109.46471 * 181.76155 * 22 12 11 35 35 H 1.09004 * 109.45929 * 301.72754 * 22 12 11 36 36 H 1.08992 * 109.50519 * 180.88071 * 23 22 12 37 37 H 1.09002 * 109.53120 * 60.77905 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4751 -4.9851 -0.0605 12 7 0.6533 -5.0195 -1.2770 13 6 0.0069 -6.3287 -1.4388 14 6 -1.0110 -6.2527 -2.5475 15 7 -0.6472 -6.5230 -3.7861 16 6 -1.5041 -6.4698 -4.7881 17 17 -0.9660 -6.8357 -6.3976 18 6 -2.8268 -6.1256 -4.5707 19 6 -3.2460 -5.8349 -3.2826 20 6 -2.3169 -5.9060 -2.2536 21 17 -2.7876 -5.5596 -0.6189 22 6 -0.3405 -3.9384 -1.2771 23 6 0.3751 -2.5858 -1.2535 24 1 -0.4850 0.8400 0.0004 25 1 0.6226 -2.5570 0.8882 26 1 2.8429 -3.6321 0.9102 27 1 2.8996 -3.5844 -0.8686 28 1 0.8316 -5.0706 0.8151 29 1 2.1805 -5.8160 -0.0753 30 1 0.7594 -7.0772 -1.6871 31 1 -0.4889 -6.6066 -0.5088 32 1 -3.5234 -6.0834 -5.3950 33 1 -4.2719 -5.5629 -3.0832 34 1 -0.9540 -4.0090 -2.1753 35 1 -0.9755 -4.0287 -0.3958 36 1 -0.3628 -1.7839 -1.2378 37 1 0.9997 -2.4884 -2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766890867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:18 Heat of formation + Delta-G solvation = 24.242484 kcal Electronic energy + Delta-G solvation = -21846.713450 eV Core-core repulsion = 18482.485230 eV Total energy + Delta-G solvation = -3364.228220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77607 -38.17999 -37.00590 -36.62995 -34.31925 -32.87775 -31.95794 -30.44433 -29.75525 -27.07276 -24.85229 -23.88390 -22.69550 -21.97657 -20.99321 -18.62074 -17.57782 -17.02479 -16.47759 -16.27718 -15.70798 -14.61940 -14.57286 -14.26756 -14.04241 -13.86702 -13.27005 -12.96122 -12.80352 -12.61759 -12.23845 -12.02824 -11.80354 -11.56215 -11.46704 -11.34273 -11.24034 -10.91957 -10.69490 -10.45610 -10.17035 -10.10707 -9.95187 -9.82456 -9.40749 -9.01429 -8.89205 -8.65783 -8.26346 -7.69885 -5.94234 -3.99193 0.47743 0.79299 1.47100 1.91720 3.19746 3.33639 3.40135 3.43533 3.98284 4.28288 4.47641 4.50951 4.55753 4.61210 5.09354 5.29158 5.36133 5.44499 5.59496 5.67890 5.76134 5.88305 5.99244 6.10559 6.24525 6.31799 6.61043 6.65459 6.88225 7.09410 7.16691 7.42308 7.45441 7.60799 7.65362 7.84469 8.08020 8.18330 8.51734 9.04357 9.65020 11.11969 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.003920 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.313899 B = 7140.842194 C = 7519.907429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.062 3.938 12 N -0.522 5.522 13 C 0.094 3.906 14 C 0.180 3.820 15 N -0.447 5.447 16 C 0.179 3.821 17 Cl -0.025 7.025 18 C -0.150 4.150 19 C -0.054 4.054 20 C -0.084 4.084 21 Cl -0.033 7.033 22 C 0.049 3.951 23 C -0.102 4.102 24 H 0.258 0.742 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 -15.353 -6.983 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.065 4.065 12 N -0.247 5.247 13 C -0.034 4.034 14 C 0.041 3.959 15 N -0.158 5.158 16 C 0.014 3.986 17 Cl 0.003 6.997 18 C -0.171 4.171 19 C -0.080 4.080 20 C -0.114 4.114 21 Cl -0.004 7.004 22 C -0.079 4.079 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.431 -15.384 -7.537 18.673 hybrid contribution -1.000 1.080 0.646 1.608 sum -8.431 -14.303 -6.891 17.977 Atomic orbital electron populations 1.69874 1.05855 1.26224 1.51188 1.24956 0.94819 0.98954 0.95231 0.86651 0.79909 0.83715 0.78052 1.20760 1.21363 1.19978 1.21212 0.92890 0.90665 1.49982 0.92746 1.18679 0.92672 0.91775 0.93882 1.21680 0.98712 0.93537 1.00445 1.22145 0.95707 0.99663 0.89026 1.62206 1.23103 1.00494 1.38940 1.21139 0.94526 0.95020 0.92702 1.20992 0.91266 0.92147 0.91530 1.66996 1.36173 1.14241 0.98394 1.21738 0.89945 0.98224 0.88659 1.98415 1.91313 1.92587 1.17361 1.21804 0.95239 1.02004 0.98054 1.21501 1.00323 0.95602 0.90572 1.22014 0.95620 1.05059 0.88714 1.98411 1.91680 1.92817 1.17471 1.22557 0.93326 0.93184 0.98787 1.21650 1.00143 0.92877 0.99403 0.93166 0.96108 0.92988 0.92367 0.95476 0.92090 0.88764 0.92568 0.82885 0.82636 0.93522 0.94532 0.89008 0.94018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 11.37 55.43 0.63 -24.87 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.49 7.75 -52.48 -0.41 1.09 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 11 C 0.06 1.10 5.42 -3.83 -0.02 1.08 16 12 N -0.52 -9.45 4.80 -236.11 -1.13 -10.58 16 13 C 0.09 1.41 5.30 -4.98 -0.03 1.38 16 14 C 0.18 2.64 5.02 -82.55 -0.41 2.23 16 15 N -0.45 -6.71 10.25 -6.59 -0.07 -6.77 16 16 C 0.18 2.27 7.27 -17.44 -0.13 2.14 16 17 Cl -0.03 -0.28 29.11 -51.86 -1.51 -1.79 16 18 C -0.15 -1.51 9.88 -39.41 -0.39 -1.90 16 19 C -0.05 -0.56 9.98 -39.25 -0.39 -0.95 16 20 C -0.08 -1.10 4.88 -39.36 -0.19 -1.29 16 21 Cl -0.03 -0.43 24.57 -51.86 -1.27 -1.70 16 22 C 0.05 0.96 4.03 -3.83 -0.02 0.95 16 23 C -0.10 -2.47 5.12 -26.65 -0.14 -2.60 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 0.78 6.82 -51.93 -0.35 0.42 16 32 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.05 0.91 5.65 -51.93 -0.29 0.62 16 35 H 0.04 0.73 6.18 -51.93 -0.32 0.40 16 36 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 37 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -29.48 323.20 -10.58 -40.06 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.63 Total: -2.56 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -2.44 Total: -13.09 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.57 Total: -42.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -2.78 Total: -3.50 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.48 -10.58 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766890867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.302 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds