Wall clock time and date at job start Tue Mar 31 2020 10:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00331 * 2 1 4 4 H 1.48494 * 109.46844 * 270.00186 * 3 2 1 5 5 H 1.48504 * 109.46695 * 30.00357 * 3 2 1 6 6 H 1.48493 * 109.46980 * 149.99856 * 3 2 1 7 7 C 1.38803 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99794 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00025 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00097 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46880 * 180.02562 * 10 9 7 12 12 O 1.20819 * 120.00209 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99662 * 180.02562 * 11 10 9 14 14 C 1.45202 * 116.99711 * 180.02562 * 13 11 10 15 15 H 1.08991 * 109.47262 * 29.99439 * 14 13 11 16 16 C 1.53004 * 109.47030 * 149.99731 * 14 13 11 17 17 H 1.09002 * 110.45558 * 179.29570 * 16 14 13 18 18 C 1.54514 * 110.50999 * 301.90061 * 16 14 13 19 19 C 1.54478 * 104.06049 * 118.78127 * 18 16 14 20 20 O 1.44425 * 104.80498 * 23.98325 * 19 18 16 21 21 C 1.44786 * 105.29206 * 319.44645 * 20 19 18 22 22 C 1.53002 * 109.46620 * 269.99146 * 14 13 11 23 23 F 1.39890 * 109.47436 * 299.99913 * 22 14 13 24 24 F 1.39902 * 109.47066 * 60.00691 * 22 14 13 25 25 F 1.39909 * 109.46436 * 180.02562 * 22 14 13 26 26 H 0.97004 * 119.99775 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46522 * 60.00126 * 10 9 7 28 28 H 1.08998 * 109.47292 * 300.00287 * 10 9 7 29 29 H 1.09004 * 110.50878 * 237.43071 * 18 16 14 30 30 H 1.08996 * 110.51254 * 359.97438 * 18 16 14 31 31 H 1.09005 * 110.36846 * 142.80856 * 19 18 16 32 32 H 1.08998 * 110.37314 * 265.14658 * 19 18 16 33 33 H 1.09001 * 110.42756 * 281.78155 * 21 20 19 34 34 H 1.09000 * 110.48740 * 159.32443 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7723 -1.2022 -0.0012 10 6 4.0865 -2.9848 -0.0009 11 6 5.5729 -3.2327 -0.0008 12 8 6.3410 -2.3001 -0.0005 13 8 6.0435 -4.4898 -0.0011 14 6 7.4863 -4.6535 -0.0004 15 1 7.9474 -3.8104 0.5139 16 6 7.8518 -5.9526 0.7205 17 1 8.9321 -6.0978 0.7196 18 6 7.3085 -5.9404 2.1669 19 6 6.3357 -7.1396 2.2125 20 8 6.7899 -8.0233 1.1643 21 6 7.1433 -7.1560 0.0601 22 6 7.9937 -4.7105 -1.4427 23 9 7.4020 -5.7927 -2.1028 24 9 7.6595 -3.5227 -2.1020 25 9 9.3838 -4.8688 -1.4420 26 1 -0.4850 0.8401 0.0004 27 1 3.6431 -3.4319 -0.8908 28 1 3.6439 -3.4316 0.8893 29 1 8.1202 -6.0796 2.8810 30 1 6.7798 -5.0088 2.3685 31 1 6.3929 -7.6380 3.1802 32 1 5.3161 -6.8088 2.0147 33 1 6.2476 -6.8267 -0.4667 34 1 7.8210 -7.6665 -0.6242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778024625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:10 Heat of formation + Delta-G solvation = -282.314400 kcal Electronic energy + Delta-G solvation = -25053.919914 eV Core-core repulsion = 20663.583440 eV Total energy + Delta-G solvation = -4390.336474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.39430 -47.91862 -47.82879 -40.87658 -39.43679 -36.77704 -33.64690 -32.56075 -30.66002 -29.78708 -28.06743 -25.76321 -24.19768 -23.14073 -21.81109 -20.83759 -18.93020 -18.64513 -18.46578 -18.02618 -17.32363 -16.61594 -16.49650 -15.84646 -15.66112 -15.17629 -14.89498 -14.66427 -14.59329 -14.28905 -14.26179 -14.02169 -13.96232 -13.89029 -13.45159 -13.27796 -12.96202 -12.83374 -12.56210 -12.02609 -11.60886 -11.46655 -11.40349 -11.31830 -11.11215 -10.89467 -10.83864 -10.49539 -10.02246 -9.95480 -9.12302 -8.72554 -7.12146 -6.40086 -4.15867 1.86519 2.09239 2.45563 2.83732 3.24250 3.30421 3.38948 3.40327 3.40542 3.77752 3.86686 4.02327 4.21227 4.29013 4.40585 4.48209 4.64299 4.73732 4.86875 4.97148 4.98713 5.09560 5.36241 5.47891 5.48677 5.52337 5.59570 5.63348 5.78986 6.07854 6.45773 7.64417 7.82605 8.31123 9.04539 10.68851 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.003926 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.814922 B = 7129.850018 C = 7901.491415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.099 3.901 3 Si 0.855 3.145 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.236 1.236 7 C -0.525 4.525 8 H 0.093 0.907 9 S -0.134 6.134 10 C -0.098 4.098 11 C 0.474 3.526 12 O -0.471 6.471 13 O -0.331 6.331 14 C 0.054 3.946 15 H 0.133 0.867 16 C -0.124 4.124 17 H 0.116 0.884 18 C -0.144 4.144 19 C 0.047 3.953 20 O -0.373 6.373 21 C 0.048 3.952 22 C 0.438 3.562 23 F -0.173 7.173 24 F -0.168 7.168 25 F -0.175 7.175 26 H 0.273 0.727 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.740 -13.560 2.155 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.110 4.110 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.160 1.160 7 C -0.672 4.672 8 H 0.111 0.889 9 S 0.092 5.908 10 C -0.246 4.246 11 C 0.315 3.685 12 O -0.354 6.354 13 O -0.249 6.249 14 C -0.004 4.004 15 H 0.151 0.849 16 C -0.143 4.143 17 H 0.134 0.866 18 C -0.182 4.182 19 C -0.030 4.030 20 O -0.292 6.292 21 C -0.029 4.029 22 C 0.383 3.617 23 F -0.154 7.154 24 F -0.149 7.149 25 F -0.157 7.157 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.567 -12.533 2.126 21.683 hybrid contribution -0.539 0.159 -0.381 0.679 sum 17.028 -12.374 1.745 21.121 Atomic orbital electron populations 1.69929 1.05871 1.27966 1.47298 1.24682 0.94448 0.98918 0.92997 0.86764 0.81800 0.83373 0.80066 1.19052 1.19689 1.16008 1.22238 0.87471 0.97838 1.59680 0.88943 1.84860 1.10376 0.98031 1.97582 1.23042 0.88564 1.05244 1.07726 1.23653 0.92564 0.80059 0.72258 1.90708 1.58460 1.43034 1.43216 1.86763 1.21107 1.32319 1.84740 1.23737 0.82521 1.03305 0.90856 0.84940 1.22833 1.02840 0.92120 0.96505 0.86634 1.22929 1.00165 1.00710 0.94351 1.23422 0.97636 0.89857 0.92105 1.89186 1.85227 1.29927 1.24837 1.23758 0.99877 0.89221 0.90036 1.20871 0.75897 0.74462 0.90456 1.93196 1.83596 1.55343 1.83290 1.93297 1.91962 1.46565 1.83065 1.93200 1.30132 1.95412 1.96919 0.91721 0.86796 0.86761 0.89706 0.89679 0.88817 0.91380 0.90091 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.97 55.49 0.78 -24.74 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 20.82 27.74 -169.99 -4.71 16.10 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 7 C -0.52 -14.40 10.04 30.94 0.31 -14.09 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 9 S -0.13 -3.18 18.55 -107.50 -1.99 -5.18 16 10 C -0.10 -1.77 6.27 36.00 0.23 -1.54 16 11 C 0.47 7.75 7.48 36.00 0.27 8.02 16 12 O -0.47 -8.81 14.28 -18.74 -0.27 -9.08 16 13 O -0.33 -4.33 8.26 -39.26 -0.32 -4.66 16 14 C 0.05 0.59 1.74 -26.73 -0.05 0.54 16 15 H 0.13 1.42 7.16 -51.93 -0.37 1.05 16 16 C -0.12 -1.08 2.90 -89.05 -0.26 -1.33 16 17 H 0.12 0.79 7.83 -51.93 -0.41 0.38 16 18 C -0.14 -1.15 6.49 -25.16 -0.16 -1.31 16 19 C 0.05 0.41 7.63 37.93 0.29 0.70 16 20 O -0.37 -4.09 11.66 -35.23 -0.41 -4.50 16 21 C 0.05 0.47 5.45 37.93 0.21 0.67 16 22 C 0.44 5.19 2.85 37.16 0.11 5.30 16 23 F -0.17 -2.02 14.33 2.25 0.03 -1.98 16 24 F -0.17 -2.49 15.97 2.25 0.04 -2.45 16 25 F -0.18 -1.88 16.82 2.25 0.04 -1.84 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.11 1.94 8.14 -51.91 -0.42 1.52 16 28 H 0.11 1.87 8.14 -51.92 -0.42 1.44 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.73 7.46 -51.93 -0.39 0.34 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.87 6.34 -51.93 -0.33 0.54 16 34 H 0.10 0.83 7.87 -51.93 -0.41 0.43 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -30.87 312.57 -4.87 -35.74 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.59 Total: -1.77 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 0.84 Total: -0.36 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.78 Total: -24.74 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.00 Total: -18.24 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.10 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.99 Total: -5.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.87 -4.87 -35.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778024625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.574 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds