Wall clock time and date at job start Tue Mar 31 2020 10:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47144 * 269.99865 * 3 2 1 5 5 H 1.48500 * 109.47064 * 30.00107 * 3 2 1 6 6 H 1.48498 * 109.47257 * 149.99819 * 3 2 1 7 7 C 1.37874 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00061 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47413 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00032 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99657 * 179.97438 * 11 10 9 14 14 S 1.81404 * 109.47077 * 180.02562 * 13 11 10 15 15 C 1.76195 * 103.00310 * 179.97438 * 14 13 11 16 16 C 1.38900 * 120.08235 * 0.29679 * 15 14 13 17 17 C 1.38133 * 119.94059 * 180.27826 * 16 15 14 18 18 C 1.38291 * 120.11534 * 359.42022 * 17 16 15 19 19 N 1.48008 * 119.91117 * 180.30138 * 18 17 16 20 20 O 1.21800 * 120.00422 * 0.02562 * 19 18 17 21 21 O 1.21804 * 119.99702 * 180.02562 * 19 18 17 22 22 C 1.38298 * 120.17299 * 0.28398 * 18 17 16 23 23 C 1.38264 * 120.05783 * 0.02562 * 22 18 17 24 24 F 1.35098 * 120.05801 * 180.02562 * 23 22 18 25 25 H 0.97001 * 119.99454 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47386 * 60.00158 * 9 7 2 27 27 H 1.09009 * 109.47364 * 300.00132 * 9 7 2 28 28 H 0.97000 * 119.99945 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.47545 * 60.00044 * 13 11 10 30 30 H 1.09005 * 109.47379 * 299.99625 * 13 11 10 31 31 H 1.07990 * 120.03090 * 359.96979 * 16 15 14 32 32 H 1.08002 * 119.94408 * 179.70562 * 17 16 15 33 33 H 1.08006 * 119.97077 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7537 -4.8833 -0.0019 12 8 0.5613 -5.1049 -0.0019 13 6 2.7331 -6.0287 -0.0022 14 16 1.8261 -7.5998 -0.0035 15 6 3.1147 -8.8014 -0.0045 16 6 4.4436 -8.3973 0.0020 17 6 5.4515 -9.3418 -0.0046 18 6 5.1398 -10.6892 -0.0056 19 7 6.2233 -11.6974 -0.0060 20 8 7.3877 -11.3401 -0.0049 21 8 5.9506 -12.8845 -0.0074 22 6 3.8182 -11.0969 -0.0059 23 6 2.8037 -10.1576 -0.0057 24 9 1.5127 -10.5559 -0.0055 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 3.1567 -3.4354 -0.0010 29 1 3.3597 -5.9713 0.8878 30 1 3.3597 -5.9708 -0.8922 31 1 4.6886 -7.3456 0.0072 32 1 6.4848 -9.0276 -0.0044 33 1 3.5785 -12.1500 -0.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788503892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:20 Heat of formation + Delta-G solvation = -56.961042 kcal Electronic energy + Delta-G solvation = -21821.212731 eV Core-core repulsion = 17891.337498 eV Total energy + Delta-G solvation = -3929.875233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.057 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.54180 -42.51694 -39.59645 -39.12153 -36.90754 -34.50953 -32.88030 -32.54161 -31.59482 -30.35603 -27.27567 -27.01272 -23.85931 -23.18104 -22.74615 -20.31704 -19.92880 -19.09587 -18.57599 -17.89020 -17.31320 -17.14890 -16.86621 -16.33411 -16.15561 -15.58328 -15.56183 -15.00056 -14.81562 -14.33817 -13.86687 -13.59767 -13.34976 -13.15976 -12.94972 -12.45737 -12.14983 -11.90905 -11.89730 -11.55542 -11.47289 -11.12020 -11.01181 -10.90696 -10.72271 -10.46695 -9.83458 -9.61688 -9.54598 -8.92653 -8.21948 -8.01928 -6.31173 -4.39654 -0.74611 0.20791 0.65065 0.77504 0.98170 1.74993 2.48071 2.86244 3.14660 3.21095 3.23109 3.31641 3.61530 3.70208 3.97915 4.15072 4.21496 4.49524 4.65077 4.68193 4.77761 4.99409 5.03408 5.05470 5.08993 5.13012 5.62150 5.99533 7.04371 7.06967 7.27514 7.29591 7.44447 7.78394 8.26878 8.50624 8.74955 9.27314 10.78787 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.002335 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.787220 B =11990.701817 C =13033.040451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.700 5.700 11 C 0.516 3.484 12 O -0.536 6.536 13 C -0.169 4.169 14 S 0.050 5.950 15 C -0.095 4.095 16 C -0.118 4.118 17 C -0.035 4.035 18 C -0.040 4.040 19 N 0.033 4.967 20 O -0.157 6.157 21 O -0.160 6.160 22 C -0.068 4.068 23 C 0.115 3.885 24 F -0.111 7.111 25 H 0.268 0.732 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.394 0.606 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.876 -18.767 -0.005 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.348 5.348 11 C 0.297 3.703 12 O -0.414 6.414 13 C -0.321 4.321 14 S 0.302 5.698 15 C -0.212 4.212 16 C -0.143 4.143 17 C -0.057 4.057 18 C -0.127 4.127 19 N 0.552 4.448 20 O -0.373 6.373 21 O -0.375 6.375 22 C -0.090 4.090 23 C 0.088 3.912 24 F -0.089 7.089 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.227 0.773 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.915 -18.238 0.001 19.882 hybrid contribution 2.401 0.852 -0.011 2.548 sum 10.316 -17.386 -0.010 20.216 Atomic orbital electron populations 1.69965 1.06142 1.27579 1.48310 1.24956 0.94948 0.99561 0.94471 0.86383 0.79588 0.82444 0.78322 1.20362 1.20893 1.19709 1.21165 0.93274 0.90231 1.53995 0.91782 1.19230 0.88141 0.81539 0.98158 1.46414 1.11612 1.05399 1.71404 1.19288 0.88380 0.83740 0.78874 1.90749 1.15972 1.84126 1.50557 1.24207 1.03620 0.96078 1.08146 1.86925 1.02925 0.93425 1.86562 1.23005 1.00411 0.97584 1.00160 1.21113 0.89386 1.00951 1.02896 1.21003 1.02242 0.89320 0.93109 1.20645 0.86947 0.88810 1.16322 1.43447 1.01972 1.01786 0.97587 1.94555 1.03319 1.86033 1.53362 1.94560 1.89499 1.00001 1.53477 1.20746 0.89357 1.02134 0.96810 1.16482 0.79370 0.89798 1.05595 1.91620 1.32865 1.90839 1.93566 0.92246 0.95131 0.95127 0.77326 0.86066 0.86067 0.82462 0.81973 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 13.29 55.43 0.74 -24.12 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -13.86 9.28 -34.44 -0.32 -14.18 16 8 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 9 C 0.25 6.08 5.43 -5.20 -0.03 6.05 16 10 N -0.70 -12.70 5.55 -61.47 -0.34 -13.04 16 11 C 0.52 8.70 7.85 -10.98 -0.09 8.62 16 12 O -0.54 -11.51 15.87 5.56 0.09 -11.43 16 13 C -0.17 -1.77 4.82 36.01 0.17 -1.59 16 14 S 0.05 0.59 20.67 -107.50 -2.22 -1.63 16 15 C -0.10 -0.86 6.11 -39.00 -0.24 -1.10 16 16 C -0.12 -0.80 9.36 -39.38 -0.37 -1.16 16 17 C -0.04 -0.24 9.55 -39.60 -0.38 -0.62 16 18 C -0.04 -0.34 6.85 -79.91 -0.55 -0.89 16 19 N 0.03 0.35 4.45 33.98 0.15 0.50 16 20 O -0.16 -1.76 18.44 -29.46 -0.54 -2.30 16 21 O -0.16 -1.84 18.44 -29.46 -0.54 -2.38 16 22 C -0.07 -0.57 9.52 -39.55 -0.38 -0.94 16 23 C 0.11 1.07 7.28 -39.24 -0.29 0.78 16 24 F -0.11 -1.16 16.76 2.25 0.04 -1.13 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.39 5.78 8.32 -40.82 -0.34 5.44 16 29 H 0.12 0.91 7.74 -51.92 -0.40 0.51 16 30 H 0.12 0.91 7.76 -51.92 -0.40 0.51 16 31 H 0.16 0.69 5.88 -52.49 -0.31 0.38 16 32 H 0.16 0.82 7.60 -52.49 -0.40 0.42 16 33 H 0.17 1.15 7.60 -52.48 -0.40 0.75 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -31.46 322.92 -7.97 -39.44 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.63 Total: -0.12 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.55 Total: -3.44 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.55 Total: -36.66 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.00 Total: -16.11 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.22 Total: -1.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.46 -7.97 -39.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788503892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.525 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds