Wall clock time and date at job start Tue Mar 31 2020 10:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47144 * 269.99865 * 3 2 1 5 5 H 1.48500 * 109.47064 * 30.00107 * 3 2 1 6 6 H 1.48498 * 109.47257 * 149.99819 * 3 2 1 7 7 C 1.37874 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00061 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47413 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00032 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99657 * 179.97438 * 11 10 9 14 14 S 1.81404 * 109.47077 * 180.02562 * 13 11 10 15 15 C 1.76195 * 103.00310 * 179.97438 * 14 13 11 16 16 C 1.38900 * 120.08235 * 0.29679 * 15 14 13 17 17 C 1.38133 * 119.94059 * 180.27826 * 16 15 14 18 18 C 1.38291 * 120.11534 * 359.42022 * 17 16 15 19 19 N 1.48008 * 119.91117 * 180.30138 * 18 17 16 20 20 O 1.21800 * 120.00422 * 0.02562 * 19 18 17 21 21 O 1.21804 * 119.99702 * 180.02562 * 19 18 17 22 22 C 1.38298 * 120.17299 * 0.28398 * 18 17 16 23 23 C 1.38264 * 120.05783 * 0.02562 * 22 18 17 24 24 F 1.35098 * 120.05801 * 180.02562 * 23 22 18 25 25 H 0.97001 * 119.99454 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47386 * 60.00158 * 9 7 2 27 27 H 1.09009 * 109.47364 * 300.00132 * 9 7 2 28 28 H 0.97000 * 119.99945 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.47545 * 60.00044 * 13 11 10 30 30 H 1.09005 * 109.47379 * 299.99625 * 13 11 10 31 31 H 1.07990 * 120.03090 * 359.96979 * 16 15 14 32 32 H 1.08002 * 119.94408 * 179.70562 * 17 16 15 33 33 H 1.08006 * 119.97077 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7537 -4.8833 -0.0019 12 8 0.5613 -5.1049 -0.0019 13 6 2.7331 -6.0287 -0.0022 14 16 1.8261 -7.5998 -0.0035 15 6 3.1147 -8.8014 -0.0045 16 6 4.4436 -8.3973 0.0020 17 6 5.4515 -9.3418 -0.0046 18 6 5.1398 -10.6892 -0.0056 19 7 6.2233 -11.6974 -0.0060 20 8 7.3877 -11.3401 -0.0049 21 8 5.9506 -12.8845 -0.0074 22 6 3.8182 -11.0969 -0.0059 23 6 2.8037 -10.1576 -0.0057 24 9 1.5127 -10.5559 -0.0055 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 3.1567 -3.4354 -0.0010 29 1 3.3597 -5.9713 0.8878 30 1 3.3597 -5.9708 -0.8922 31 1 4.6886 -7.3456 0.0072 32 1 6.4848 -9.0276 -0.0044 33 1 3.5785 -12.1500 -0.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788503892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:19 Heat of formation + Delta-G solvation = -77.023892 kcal Electronic energy + Delta-G solvation = -21822.082721 eV Core-core repulsion = 17891.337498 eV Total energy + Delta-G solvation = -3930.745223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.057 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.29081 -43.29510 -40.58607 -40.25478 -37.72191 -36.24457 -34.45230 -33.49918 -32.27431 -31.49360 -28.84296 -27.96015 -24.87901 -24.28543 -23.86266 -21.73089 -20.70570 -19.91169 -19.57390 -18.67795 -18.66459 -17.89862 -17.67766 -17.55663 -17.13227 -17.09788 -16.74188 -16.21901 -15.77950 -15.40156 -14.73337 -14.68593 -14.57097 -14.08584 -14.03514 -13.88696 -13.52184 -13.17398 -12.89901 -12.73678 -12.72213 -12.35109 -12.32322 -12.23328 -11.60799 -11.51536 -11.48663 -11.07289 -10.82443 -10.44786 -9.94379 -8.88754 -8.30375 -6.46775 -1.48167 -0.39845 -0.18547 0.01586 0.24366 0.95931 1.44676 1.45860 1.54850 1.57044 1.85168 2.25369 2.46101 2.65639 3.05606 3.10750 3.37731 3.52762 3.70557 3.90112 3.91746 4.08501 4.13716 4.41721 4.48643 4.55654 4.94760 5.08220 5.21521 5.24773 5.41489 5.61323 5.82084 6.42259 6.63097 6.73843 7.20662 7.36105 8.81511 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.002335 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.787220 B =11990.701817 C =13033.040451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.982 3.018 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.554 4.554 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.512 3.488 12 O -0.589 6.589 13 C -0.145 4.145 14 S -0.015 6.015 15 C -0.088 4.088 16 C -0.102 4.102 17 C -0.022 4.022 18 C -0.046 4.046 19 N 0.034 4.966 20 O -0.157 6.157 21 O -0.188 6.188 22 C -0.066 4.066 23 C 0.102 3.898 24 F -0.124 7.124 25 H 0.268 0.732 26 H -0.010 1.010 27 H -0.010 1.010 28 H 0.415 0.585 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.192 0.808 32 H 0.189 0.811 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.456 -18.202 0.009 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.592 4.592 8 H 0.107 0.893 9 C 0.143 3.857 10 N -0.345 5.345 11 C 0.297 3.703 12 O -0.470 6.470 13 C -0.296 4.296 14 S 0.235 5.765 15 C -0.204 4.204 16 C -0.127 4.127 17 C -0.044 4.044 18 C -0.133 4.133 19 N 0.550 4.450 20 O -0.375 6.375 21 O -0.398 6.398 22 C -0.087 4.087 23 C 0.075 3.925 24 F -0.102 7.102 25 H 0.077 0.923 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.252 0.748 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.209 0.791 32 H 0.206 0.794 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.551 -17.760 0.015 21.186 hybrid contribution 1.294 0.595 -0.016 1.425 sum 12.846 -17.165 -0.002 21.439 Atomic orbital electron populations 1.70132 1.08289 1.28560 1.49984 1.26043 0.95717 1.03901 0.93970 0.85188 0.78585 0.77124 0.78528 1.19741 1.21373 1.17667 1.21614 0.94477 0.90337 1.52763 0.89345 1.18601 0.88648 0.84048 0.94451 1.46035 1.11691 1.04782 1.71991 1.20256 0.88846 0.84565 0.76633 1.90736 1.19012 1.85033 1.52233 1.24044 1.01601 0.91785 1.12138 1.87307 1.05672 0.95620 1.87863 1.22862 1.00397 0.96268 1.00859 1.21490 0.87833 1.02530 1.00863 1.21337 1.03600 0.88190 0.91252 1.20796 0.86338 0.89124 1.17085 1.43689 1.02258 1.01966 0.97112 1.94535 1.03987 1.85975 1.53003 1.94566 1.89601 1.00809 1.54825 1.20779 0.89154 1.02478 0.96333 1.16637 0.79063 0.90271 1.06549 1.91589 1.33793 1.91023 1.93808 0.92305 0.99162 0.99156 0.74839 0.81925 0.81933 0.79074 0.79388 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 2 C 0.00 0.18 5.46 84.65 0.46 0.65 16 3 Si 0.98 39.93 29.54 68.60 2.03 41.96 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.55 -27.74 9.28 25.60 0.24 -27.50 16 8 H 0.09 3.89 7.60 -2.91 -0.02 3.87 16 9 C 0.27 13.30 5.43 85.63 0.46 13.76 16 10 N -0.69 -24.46 5.55 -466.79 -2.59 -27.05 16 11 C 0.51 16.76 7.85 87.66 0.69 17.45 16 12 O -0.59 -26.05 15.87 -3.03 -0.05 -26.10 16 13 C -0.15 -2.51 4.82 71.24 0.34 -2.17 16 14 S -0.01 -0.32 20.67 -56.49 -1.17 -1.49 16 15 C -0.09 -1.36 6.11 22.64 0.14 -1.23 16 16 C -0.10 -0.91 9.36 22.40 0.21 -0.70 16 17 C -0.02 -0.21 9.55 22.26 0.21 0.00 16 18 C -0.05 -0.69 6.85 36.40 0.25 -0.44 16 19 N 0.03 0.66 4.45 -46.40 -0.21 0.45 16 20 O -0.16 -3.17 18.44 18.89 0.35 -2.82 16 21 O -0.19 -4.20 18.44 18.88 0.35 -3.85 16 22 C -0.07 -0.99 9.52 22.29 0.21 -0.78 16 23 C 0.10 1.76 7.28 22.49 0.16 1.92 16 24 F -0.12 -2.61 16.76 44.97 0.75 -1.86 16 25 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 28 H 0.41 10.90 8.32 -92.71 -0.77 10.13 16 29 H 0.16 1.53 7.74 -2.39 -0.02 1.51 16 30 H 0.16 1.53 7.76 -2.39 -0.02 1.51 16 31 H 0.19 0.38 5.88 -2.92 -0.02 0.36 16 32 H 0.19 0.90 7.60 -2.91 -0.02 0.87 16 33 H 0.18 2.30 7.60 -2.91 -0.02 2.28 16 Total: -1.00 -73.59 322.92 3.55 -70.04 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 0.42 Total: 3.35 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 3.38 Total: 0.98 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -2.51 Total: -80.22 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: 0.65 Total: -32.77 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.75 Total: -1.86 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.17 Total: -1.49 kcal Total: -73.59 3.55 -70.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788503892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.980 kcal (2) G-P(sol) polarization free energy of solvation -73.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds