Wall clock time and date at job start Tue Mar 31 2020 10:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86795 * 119.99999 * 2 1 4 4 H 1.48499 * 109.47104 * 240.00539 * 3 2 1 5 5 H 1.48507 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47386 * 120.00199 * 3 2 1 7 7 C 1.38796 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99530 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00303 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47222 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.34221 * 116.99903 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00367 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00092 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.38226 * 120.01014 * 99.99683 * 17 16 14 19 19 C 1.38227 * 120.01636 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.02042 * 0.04418 * 19 18 17 21 21 C 1.38191 * 120.01661 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.00232 * 279.72237 * 17 16 14 23 23 Cl 1.73605 * 120.01417 * 359.97438 * 22 17 16 24 24 H 0.97003 * 120.00120 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47258 * 59.99866 * 10 9 7 26 26 H 1.08994 * 109.47323 * 300.00239 * 10 9 7 27 27 H 1.09003 * 109.46913 * 59.99926 * 11 10 9 28 28 H 1.08993 * 109.47389 * 299.99900 * 11 10 9 29 29 H 1.08995 * 109.46885 * 60.00179 * 12 11 10 30 30 H 1.09006 * 109.46726 * 300.00547 * 12 11 10 31 31 H 1.09001 * 109.46953 * 299.99668 * 16 14 13 32 32 H 1.09000 * 109.47318 * 59.99266 * 16 14 13 33 33 H 1.08002 * 119.99409 * 0.02562 * 18 17 16 34 34 H 1.07997 * 119.98730 * 180.02562 * 19 18 17 35 35 H 1.08004 * 119.98567 * 179.97438 * 20 19 18 36 36 H 1.07995 * 120.00693 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9793 -5.3242 0.0001 12 6 3.1514 -6.3078 -0.0005 13 8 2.6422 -7.6675 -0.0005 14 6 3.5485 -8.6576 -0.0005 15 8 4.7283 -8.3967 -0.0010 16 6 3.0947 -10.0947 -0.0011 17 6 4.2982 -11.0016 -0.0004 18 6 4.7244 -11.5838 1.1786 19 6 5.8280 -12.4161 1.1794 20 6 6.5067 -12.6660 0.0010 21 6 6.0818 -12.0842 -1.1783 22 6 4.9733 -11.2561 -1.1807 23 17 4.4339 -10.5315 -2.6632 24 1 -0.4850 0.8401 0.0004 25 1 3.1245 -3.7314 0.8894 26 1 3.1245 -3.7314 -0.8904 27 1 1.3704 -5.4846 -0.8897 28 1 1.3710 -5.4840 0.8903 29 1 3.7606 -6.1476 0.8890 30 1 3.7594 -6.1478 -0.8910 31 1 2.4950 -10.2866 0.8887 32 1 2.4954 -10.2861 -0.8913 33 1 4.1945 -11.3890 2.0994 34 1 6.1603 -12.8711 2.1008 35 1 7.3692 -13.3161 0.0023 36 1 6.6118 -12.2799 -2.0986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805382873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:40 Heat of formation + Delta-G solvation = -88.338939 kcal Electronic energy + Delta-G solvation = -19887.417142 eV Core-core repulsion = 16488.057980 eV Total energy + Delta-G solvation = -3399.359162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71472 -39.52271 -36.76456 -36.71348 -33.65929 -33.26917 -32.44131 -31.13884 -28.61483 -26.36742 -25.41050 -23.15018 -22.69142 -21.33500 -20.79293 -17.83710 -17.51636 -17.34967 -16.87475 -16.41296 -15.92279 -15.67353 -14.81866 -14.65636 -14.37306 -14.25733 -13.85751 -13.61759 -13.20498 -13.11143 -12.63701 -12.36623 -12.16674 -12.00973 -11.85569 -11.71214 -11.33717 -11.12353 -11.11467 -10.96975 -10.92987 -10.69657 -10.55504 -10.27384 -9.64981 -9.34436 -9.06859 -9.06823 -8.36127 -6.56477 -6.24543 -3.95695 0.70302 0.82913 1.80076 2.14554 2.56607 3.20148 3.23097 3.26972 3.29280 3.56068 4.07796 4.20211 4.29529 4.53806 4.70193 4.75721 4.89969 5.00159 5.08203 5.11089 5.14116 5.20152 5.27838 5.38798 5.46341 5.50227 5.77945 5.78238 5.89503 5.90877 5.98600 6.17089 6.35400 6.45388 6.46360 6.68071 7.58865 7.70772 8.34728 9.21633 10.83536 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.031857 B = 0.002050 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.712325 B =13655.715479 C =13750.049671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.355 6.355 14 C 0.463 3.537 15 O -0.499 6.499 16 C -0.080 4.080 17 C -0.068 4.068 18 C -0.093 4.093 19 C -0.115 4.115 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.017 4.017 23 Cl -0.064 7.064 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 -28.198 0.277 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.271 6.271 14 C 0.305 3.695 15 O -0.386 6.386 16 C -0.118 4.118 17 C -0.069 4.069 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.043 4.043 23 Cl -0.035 7.035 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.463 -28.063 0.138 29.312 hybrid contribution 2.004 1.487 -0.157 2.500 sum 10.467 -26.576 -0.019 28.563 Atomic orbital electron populations 1.70011 1.05914 1.27514 1.47053 1.25020 0.95110 0.99124 0.94532 0.86201 0.79216 0.81095 0.78883 1.19908 1.20796 1.19913 1.22654 0.94554 0.90691 1.58777 0.90902 1.84642 1.08801 0.99210 1.96886 1.23178 1.03421 0.96367 1.03326 1.21284 0.96453 0.91562 1.04308 1.23271 0.97740 0.76551 1.02582 1.86461 1.40212 1.16917 1.83552 1.23272 0.84871 0.88346 0.73059 1.90692 1.18444 1.84903 1.44601 1.20329 0.96956 0.87125 1.07346 1.19161 0.96863 0.98384 0.92447 1.21033 0.96862 0.96491 0.96776 1.21232 0.95377 0.98190 0.98545 1.21158 0.99799 0.99387 0.91990 1.21051 0.95331 0.96978 0.99555 1.20824 0.97347 0.98663 0.87512 1.98391 1.89369 1.82282 1.33436 0.92198 0.91756 0.91748 0.90344 0.90340 0.91179 0.91171 0.86232 0.86286 0.84853 0.85142 0.84993 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 9 S -0.12 -3.22 21.44 -107.50 -2.30 -5.53 16 10 C -0.11 -2.30 5.67 37.15 0.21 -2.09 16 11 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 12 C 0.07 1.08 5.47 37.16 0.20 1.29 16 13 O -0.35 -4.91 10.22 -39.23 -0.40 -5.31 16 14 C 0.46 5.95 7.74 36.01 0.28 6.23 16 15 O -0.50 -7.82 15.70 -18.75 -0.29 -8.12 16 16 C -0.08 -0.72 5.41 -29.03 -0.16 -0.87 16 17 C -0.07 -0.63 4.42 -104.59 -0.46 -1.10 16 18 C -0.09 -0.72 9.67 -39.59 -0.38 -1.10 16 19 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 20 C -0.11 -0.71 10.05 -39.59 -0.40 -1.11 16 21 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 22 C -0.02 -0.17 6.21 -39.50 -0.25 -0.41 16 23 Cl -0.06 -0.67 27.34 -51.86 -1.42 -2.09 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 26 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.12 0.73 8.00 -51.93 -0.42 0.32 16 32 H 0.12 0.94 7.34 -51.93 -0.38 0.56 16 33 H 0.13 0.75 8.04 -52.49 -0.42 0.33 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -33.31 346.40 -9.74 -43.05 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.57 Total: -2.55 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.69 Total: -16.03 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.73 Total: -25.20 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.70 Total: -13.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.30 Total: -5.53 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.42 Total: -2.09 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.31 -9.74 -43.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805382873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.288 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds