Wall clock time and date at job start Tue Mar 31 2020 11:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00192 * 2 1 4 4 H 1.48497 * 109.47555 * 240.00114 * 3 2 1 5 5 H 1.48500 * 109.47166 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46986 * 119.99785 * 3 2 1 7 7 C 1.37878 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00003 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.46837 * 179.97438 * 9 7 2 11 11 C 1.42908 * 113.99718 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47249 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.46831 * 64.99968 * 12 11 10 14 14 C 1.34235 * 116.99701 * 180.02562 * 13 12 11 15 15 O 1.20825 * 120.00160 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99933 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.47311 * 305.00043 * 16 14 13 18 18 O 1.42906 * 109.47201 * 184.99908 * 16 14 13 19 19 C 1.50696 * 109.47501 * 64.99948 * 16 14 13 20 20 C 1.38247 * 119.98658 * 265.00328 * 19 16 14 21 21 C 1.38216 * 120.01497 * 179.97438 * 20 19 16 22 22 C 1.38357 * 119.98603 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.01134 * 180.02562 * 22 21 20 24 24 C 1.38347 * 119.97107 * 0.28224 * 22 21 20 25 25 C 1.38219 * 119.98930 * 359.40143 * 24 22 21 26 26 H 0.97006 * 119.99750 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46939 * 59.99967 * 9 7 2 28 28 H 1.08995 * 109.46561 * 299.99865 * 9 7 2 29 29 H 1.09001 * 109.46606 * 60.00082 * 11 10 9 30 30 H 1.09003 * 109.46998 * 300.00242 * 11 10 9 31 31 H 1.09004 * 109.46958 * 305.00274 * 12 11 10 32 32 H 1.08993 * 109.47033 * 185.00215 * 12 11 10 33 33 H 0.96695 * 113.99566 * 299.99518 * 18 16 14 34 34 H 1.08003 * 119.99321 * 359.97438 * 20 19 16 35 35 H 1.08002 * 120.00776 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.00661 * 179.71600 * 24 22 21 37 37 H 1.07997 * 119.99445 * 180.32231 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5650 -4.8754 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 8 3.3991 -5.8891 1.2371 14 6 4.3939 -6.7763 1.3960 15 8 4.6288 -7.5825 0.5273 16 6 5.2168 -6.7675 2.6584 17 1 5.6356 -5.7729 2.8122 18 8 6.2775 -7.7181 2.5422 19 6 4.3426 -7.1312 3.8307 20 6 3.7619 -6.1359 4.5946 21 6 2.9595 -6.4688 5.6696 22 6 2.7378 -7.7984 5.9814 23 17 1.7296 -8.2173 7.3311 24 6 3.3243 -8.7939 5.2204 25 6 4.1212 -8.4598 4.1417 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5563 -0.8920 28 1 0.6241 -2.5574 0.8880 29 1 0.9446 -4.9819 -0.8931 30 1 0.9451 -4.9830 0.8869 31 1 3.3216 -5.7953 -0.8453 32 1 2.1820 -6.9374 -0.0937 33 1 5.9776 -8.6269 2.4035 34 1 3.9354 -5.0980 4.3514 35 1 2.5057 -5.6912 6.2661 36 1 3.1553 -9.8319 5.4661 37 1 4.5749 -9.2369 3.5444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815247879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:41 Heat of formation + Delta-G solvation = -167.352087 kcal Electronic energy + Delta-G solvation = -23038.646936 eV Core-core repulsion = 19193.108636 eV Total energy + Delta-G solvation = -3845.538300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95728 -39.59291 -37.68160 -36.92507 -36.53207 -35.91401 -32.82109 -32.05438 -31.39476 -30.21680 -27.62241 -26.83327 -23.25966 -23.09464 -22.41593 -22.02112 -21.02367 -18.46277 -18.14740 -17.22549 -16.79473 -16.47622 -16.13762 -16.06003 -15.31009 -15.02779 -14.77516 -14.37439 -14.20000 -13.93403 -13.84734 -13.79944 -13.15476 -12.85075 -12.71860 -12.28641 -12.04651 -11.88709 -11.83603 -11.49077 -11.30086 -11.14179 -10.99934 -10.87402 -10.80404 -10.48958 -10.33139 -10.08432 -9.41776 -9.18356 -9.00106 -8.91492 -8.25747 -6.15189 -4.17325 0.63033 0.91698 1.77673 2.01903 2.51568 3.19579 3.29870 3.32799 3.36452 3.90256 4.09408 4.28647 4.33360 4.48585 4.57639 4.68518 4.78019 4.93672 5.12901 5.16348 5.21403 5.25048 5.38025 5.55584 5.73979 5.79071 5.85447 5.85908 5.99697 6.02454 6.34840 6.42802 6.96873 7.00749 7.35295 7.62540 7.74089 8.08396 8.47345 8.94677 9.47634 10.96240 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.003072 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.681848 B = 9113.082539 C =10348.134280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.333 6.333 14 C 0.437 3.563 15 O -0.506 6.506 16 C 0.164 3.836 17 H 0.152 0.848 18 O -0.522 6.522 19 C -0.118 4.118 20 C -0.073 4.073 21 C -0.106 4.106 22 C -0.027 4.027 23 Cl -0.069 7.069 24 C -0.110 4.110 25 C -0.095 4.095 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.383 0.617 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -18.841 11.482 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.248 6.248 14 C 0.279 3.721 15 O -0.395 6.395 16 C 0.103 3.897 17 H 0.169 0.831 18 O -0.328 6.328 19 C -0.119 4.119 20 C -0.092 4.092 21 C -0.125 4.125 22 C -0.054 4.054 23 Cl -0.040 7.040 24 C -0.129 4.129 25 C -0.114 4.114 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.233 0.767 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.490 -18.422 11.396 22.613 hybrid contribution -0.559 0.259 -0.180 0.642 sum 5.931 -18.163 11.216 22.156 Atomic orbital electron populations 1.69950 1.06116 1.27356 1.50325 1.24944 0.94983 0.99446 0.95041 0.86384 0.79316 0.81822 0.78895 1.19992 1.21130 1.19948 1.21006 0.94063 0.89283 1.51163 0.91542 1.20232 0.88718 0.83438 0.95513 1.87914 1.35341 1.12579 1.95235 1.22315 0.93160 0.85459 1.00642 1.23272 0.93714 0.98915 0.84082 1.86599 1.42848 1.53696 1.41668 1.24418 0.79642 0.78691 0.89368 1.90669 1.67399 1.38316 1.43085 1.20294 0.86338 0.96688 0.86416 0.83084 1.86716 1.30866 1.20776 1.94481 1.20184 0.99919 0.94345 0.97438 1.21092 0.94798 1.00173 0.93106 1.21139 0.98700 0.94636 0.97980 1.21040 0.97400 0.94720 0.92245 1.98384 1.67557 1.93758 1.44293 1.20964 0.97574 0.99231 0.95082 1.20829 0.97922 0.95562 0.97051 0.92536 0.97633 0.97476 0.91857 0.93161 0.90310 0.90416 0.76696 0.83666 0.84169 0.84593 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -15.00 9.43 -34.44 -0.32 -15.32 16 8 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.20 5.23 5.69 36.01 0.20 5.44 16 10 O -0.39 -9.21 10.30 -38.80 -0.40 -9.61 16 11 C 0.06 1.10 6.33 37.16 0.24 1.33 16 12 C 0.07 1.12 5.84 37.16 0.22 1.34 16 13 O -0.33 -5.18 10.18 -42.04 -0.43 -5.61 16 14 C 0.44 6.00 7.26 36.00 0.26 6.26 16 15 O -0.51 -7.85 16.07 -25.46 -0.41 -8.26 16 16 C 0.16 1.73 3.73 -29.04 -0.11 1.62 16 17 H 0.15 1.42 8.05 -51.93 -0.42 1.01 16 18 O -0.52 -5.29 12.79 -55.14 -0.71 -6.00 16 19 C -0.12 -1.15 4.98 -104.62 -0.52 -1.67 16 20 C -0.07 -0.72 9.68 -39.59 -0.38 -1.10 16 21 C -0.11 -1.01 9.83 -39.55 -0.39 -1.39 16 22 C -0.03 -0.26 6.32 -39.50 -0.25 -0.51 16 23 Cl -0.07 -0.62 28.96 -51.86 -1.50 -2.12 16 24 C -0.11 -0.92 9.83 -39.55 -0.39 -1.31 16 25 C -0.10 -0.80 9.33 -39.59 -0.37 -1.17 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.24 8.13 -51.93 -0.42 0.81 16 32 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.38 2.80 7.14 45.56 0.33 3.13 16 34 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.80 6.61 -52.49 -0.35 0.46 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -33.44 347.09 -8.20 -41.64 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.79 Total: -1.08 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.91 Total: -4.96 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.94 Total: -29.47 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.44 -8.20 -41.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815247879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.713 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds