Wall clock time and date at job start Tue Mar 31 2020 10:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21419 * 119.99772 * 2 1 4 4 C 1.41448 * 120.00115 * 180.02562 * 2 1 3 5 5 C 1.36365 * 125.12495 * 180.29034 * 4 2 1 6 6 C 1.38756 * 113.38947 * 180.23123 * 5 4 2 7 7 C 1.47220 * 122.91291 * 179.77752 * 6 5 4 8 8 O 1.21543 * 119.99544 * 359.72908 * 7 6 5 9 9 O 1.34768 * 120.00124 * 179.73459 * 7 6 5 10 10 C 1.45202 * 116.99635 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.47017 * 179.97438 * 12 11 10 14 14 C 1.76202 * 99.99745 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.38806 * 119.99444 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00505 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99420 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47223 * 59.99791 * 18 16 14 20 20 H 1.48500 * 109.46822 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47235 * 299.99614 * 18 16 14 22 22 C 1.36856 * 114.17773 * 359.51016 * 6 5 4 23 23 S 1.70552 * 110.74866 * 0.26972 * 22 6 5 24 24 H 1.09010 * 109.46675 * 239.99761 * 1 2 3 25 25 H 1.08998 * 109.47147 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47248 * 120.00293 * 1 2 3 27 27 H 1.08004 * 123.30377 * 0.03081 * 5 4 2 28 28 H 1.09001 * 109.46860 * 60.00141 * 10 9 7 29 29 H 1.08993 * 109.47426 * 299.99502 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00397 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99993 * 11 10 9 32 32 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 33 33 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 34 34 H 0.96998 * 120.00447 * 180.02562 * 17 16 14 35 35 H 1.08002 * 124.62136 * 180.29168 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1141 1.0515 0.0000 4 6 2.2143 -1.2250 -0.0005 5 6 3.5725 -1.3468 0.0050 6 6 4.0074 -2.6644 -0.0021 7 6 5.4318 -3.0366 -0.0028 8 8 6.2858 -2.1718 -0.0018 9 8 5.7886 -4.3362 -0.0045 10 6 7.2108 -4.6292 -0.0056 11 6 7.4192 -6.1450 -0.0069 12 6 8.9177 -6.4538 -0.0074 13 16 9.1641 -8.2469 -0.0081 14 6 10.9249 -8.3137 -0.0079 15 1 11.5000 -7.3996 -0.0070 16 6 11.5728 -9.5413 -0.0088 17 7 10.8719 -10.6554 -0.0094 18 14 13.4394 -9.6120 -0.0078 19 1 13.9600 -8.9325 1.2057 20 1 13.8810 -11.0299 -0.0085 21 1 13.9613 -8.9300 -1.2193 22 6 2.9975 -3.5880 -0.0027 23 16 1.4753 -2.8188 -0.0018 24 1 -0.3633 -0.5139 0.8901 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 4.2437 -0.5007 0.0110 28 1 7.6708 -4.2003 0.8847 29 1 7.6699 -4.1983 -0.8953 30 1 6.9601 -6.5755 0.8831 31 1 6.9590 -6.5742 -0.8969 32 1 9.3770 -6.0231 -0.8971 33 1 9.3773 -6.0246 0.8829 34 1 11.3247 -11.5132 -0.0097 35 1 3.1445 -4.6580 -0.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815280945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:06 Heat of formation + Delta-G solvation = -106.905133 kcal Electronic energy + Delta-G solvation = -19511.569180 eV Core-core repulsion = 16113.448634 eV Total energy + Delta-G solvation = -3398.120546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73607 -39.93529 -37.73965 -36.51016 -33.56599 -32.46781 -31.96201 -29.75632 -26.98411 -25.94105 -25.44478 -23.60333 -21.39138 -20.61580 -19.73204 -18.04549 -17.91893 -17.42017 -16.70080 -16.58456 -15.72637 -15.65822 -15.33250 -14.84015 -14.75515 -14.50222 -13.69146 -13.48386 -13.44464 -13.22732 -12.90742 -12.78224 -12.72983 -12.59147 -12.15550 -11.80299 -11.39433 -11.17800 -11.01589 -10.96533 -10.75725 -10.65554 -10.41071 -10.34840 -9.67432 -9.53934 -9.27575 -9.09110 -8.39677 -6.59482 -6.26982 -3.98389 -0.36112 0.78312 0.92788 1.14330 2.15493 2.43606 2.79196 3.20001 3.21630 3.26088 3.49976 3.69223 4.17947 4.36211 4.56309 4.57947 4.66944 4.82037 4.83126 5.06126 5.09897 5.12180 5.16116 5.30494 5.36335 5.43806 5.56937 5.61992 5.73055 5.86627 6.09721 6.33694 6.40245 6.62056 6.99729 7.56692 7.57523 8.32428 9.19379 10.81098 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.046618 B = 0.001881 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.487603 B =14879.364812 C =15448.799579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.422 3.578 3 O -0.452 6.452 4 C -0.325 4.325 5 C 0.007 3.993 6 C -0.158 4.158 7 C 0.525 3.475 8 O -0.502 6.502 9 O -0.351 6.351 10 C 0.074 3.926 11 C -0.097 4.097 12 C -0.115 4.115 13 S -0.123 6.123 14 C -0.520 4.520 15 H 0.073 0.927 16 C 0.072 3.928 17 N -0.870 5.870 18 Si 0.920 3.080 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.274 1.274 22 C -0.162 4.162 23 S 0.281 5.719 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.166 0.834 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.268 0.732 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.111 16.265 0.025 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.301 3.699 3 O -0.330 6.330 4 C -0.442 4.442 5 C -0.024 4.024 6 C -0.173 4.173 7 C 0.367 3.633 8 O -0.391 6.391 9 O -0.267 6.267 10 C -0.001 4.001 11 C -0.136 4.136 12 C -0.264 4.264 13 S 0.105 5.895 14 C -0.668 4.668 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.505 5.505 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.302 4.302 23 S 0.550 5.450 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.183 0.817 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -25.771 15.454 0.025 30.049 hybrid contribution 3.829 1.176 0.002 4.006 sum -21.942 16.630 0.028 27.532 Atomic orbital electron populations 1.22312 0.93329 1.05856 1.04691 1.20147 0.91594 0.86262 0.71943 1.90643 1.72056 1.33469 1.36792 1.23993 0.97995 1.00178 1.22072 1.20849 0.94092 0.96743 0.90723 1.18325 0.91497 0.93151 1.14291 1.20326 0.88428 0.81379 0.73186 1.90882 1.52001 1.50596 1.45617 1.86503 1.30346 1.26199 1.83679 1.23338 0.75968 0.97931 1.02879 1.21290 0.96559 0.91415 1.04304 1.23183 0.95920 1.03843 1.03426 1.84627 1.10448 0.97539 1.96901 1.22658 0.89936 0.95306 1.58874 0.90860 1.25015 0.99513 0.94706 0.94473 1.69999 1.35923 0.97560 1.47009 0.86203 0.83002 0.77313 0.78907 1.19897 1.20776 1.19893 1.26610 0.97693 1.06117 0.99770 1.82993 1.04519 0.94027 1.63505 0.88707 0.89013 0.88703 0.81686 0.90918 0.90911 0.90319 0.90316 0.91673 0.91674 0.92174 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.79 9.59 36.01 0.35 -0.45 16 2 C 0.42 3.39 7.05 -33.09 -0.23 3.16 16 3 O -0.45 -5.41 17.42 5.44 0.09 -5.32 16 4 C -0.32 -2.54 6.19 -39.03 -0.24 -2.78 16 5 C 0.01 0.07 9.47 -40.06 -0.38 -0.31 16 6 C -0.16 -1.61 5.81 -106.56 -0.62 -2.23 16 7 C 0.52 6.96 7.92 34.38 0.27 7.23 16 8 O -0.50 -8.05 16.48 -19.30 -0.32 -8.37 16 9 O -0.35 -4.65 9.84 -40.68 -0.40 -5.05 16 10 C 0.07 1.04 5.48 37.16 0.20 1.24 16 11 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 12 C -0.12 -2.25 5.67 37.16 0.21 -2.04 16 13 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 14 C -0.52 -14.73 9.50 30.94 0.29 -14.44 16 15 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 17 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 18 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.16 -1.15 10.57 30.23 0.32 -0.83 16 23 S 0.28 1.33 22.36 -107.50 -2.40 -1.08 16 24 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 25 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 26 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.17 1.82 7.92 -52.48 -0.42 1.40 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 33 H 0.06 1.26 8.14 -51.91 -0.42 0.83 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.19 1.06 8.00 -52.49 -0.42 0.64 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -34.21 345.24 -8.68 -42.89 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.18 Total: -3.05 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.07 Total: -11.19 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.73 Total: -24.92 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.62 Total: -18.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -4.71 Total: -6.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.21 -8.68 -42.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815280945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.016 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds