Wall clock time and date at job start Tue Mar 31 2020 10:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21419 * 119.99772 * 2 1 4 4 C 1.41448 * 120.00115 * 180.02562 * 2 1 3 5 5 C 1.36365 * 125.12495 * 180.29034 * 4 2 1 6 6 C 1.38756 * 113.38947 * 180.23123 * 5 4 2 7 7 C 1.47220 * 122.91291 * 179.77752 * 6 5 4 8 8 O 1.21543 * 119.99544 * 359.72908 * 7 6 5 9 9 O 1.34768 * 120.00124 * 179.73459 * 7 6 5 10 10 C 1.45202 * 116.99635 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.47017 * 179.97438 * 12 11 10 14 14 C 1.76202 * 99.99745 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.38806 * 119.99444 * 180.02562 * 14 13 12 17 17 N 1.31623 * 120.00505 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99420 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47223 * 59.99791 * 18 16 14 20 20 H 1.48500 * 109.46822 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47235 * 299.99614 * 18 16 14 22 22 C 1.36856 * 114.17773 * 359.51016 * 6 5 4 23 23 S 1.70552 * 110.74866 * 0.26972 * 22 6 5 24 24 H 1.09010 * 109.46675 * 239.99761 * 1 2 3 25 25 H 1.08998 * 109.47147 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47248 * 120.00293 * 1 2 3 27 27 H 1.08004 * 123.30377 * 0.03081 * 5 4 2 28 28 H 1.09001 * 109.46860 * 60.00141 * 10 9 7 29 29 H 1.08993 * 109.47426 * 299.99502 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00397 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99993 * 11 10 9 32 32 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 33 33 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 34 34 H 0.96998 * 120.00447 * 180.02562 * 17 16 14 35 35 H 1.08002 * 124.62136 * 180.29168 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1141 1.0515 0.0000 4 6 2.2143 -1.2250 -0.0005 5 6 3.5725 -1.3468 0.0050 6 6 4.0074 -2.6644 -0.0021 7 6 5.4318 -3.0366 -0.0028 8 8 6.2858 -2.1718 -0.0018 9 8 5.7886 -4.3362 -0.0045 10 6 7.2108 -4.6292 -0.0056 11 6 7.4192 -6.1450 -0.0069 12 6 8.9177 -6.4538 -0.0074 13 16 9.1641 -8.2469 -0.0081 14 6 10.9249 -8.3137 -0.0079 15 1 11.5000 -7.3996 -0.0070 16 6 11.5728 -9.5413 -0.0088 17 7 10.8719 -10.6554 -0.0094 18 14 13.4394 -9.6120 -0.0078 19 1 13.9600 -8.9325 1.2057 20 1 13.8810 -11.0299 -0.0085 21 1 13.9613 -8.9300 -1.2193 22 6 2.9975 -3.5880 -0.0027 23 16 1.4753 -2.8188 -0.0018 24 1 -0.3633 -0.5139 0.8901 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 4.2437 -0.5007 0.0110 28 1 7.6708 -4.2003 0.8847 29 1 7.6699 -4.1983 -0.8953 30 1 6.9601 -6.5755 0.8831 31 1 6.9590 -6.5742 -0.8969 32 1 9.3770 -6.0231 -0.8971 33 1 9.3773 -6.0246 0.8829 34 1 11.3247 -11.5132 -0.0097 35 1 3.1445 -4.6580 -0.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815280945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:05 Heat of formation + Delta-G solvation = -127.116256 kcal Electronic energy + Delta-G solvation = -19512.445600 eV Core-core repulsion = 16113.448634 eV Total energy + Delta-G solvation = -3398.996966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.048 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70450 -40.65866 -38.54296 -37.55909 -34.93141 -34.59018 -32.56713 -30.28647 -28.30780 -27.58983 -26.58752 -24.47337 -22.73223 -21.40119 -20.45818 -19.56841 -18.81782 -18.62587 -17.81511 -17.49716 -16.90297 -16.47151 -16.31278 -16.11797 -15.98767 -15.91118 -15.05782 -14.45926 -14.40888 -14.06433 -13.87338 -13.80891 -13.75609 -13.22992 -13.15534 -13.06545 -12.94497 -12.66183 -12.49149 -12.42855 -12.37769 -11.77403 -11.56594 -11.48210 -11.14827 -11.05457 -10.37937 -10.16999 -9.78989 -8.68466 -8.38823 -6.15168 -0.96476 0.11560 0.26687 0.55669 1.24727 1.39757 1.40465 1.47206 1.49382 1.81914 1.95623 2.26375 2.95696 3.14591 3.27992 3.62386 3.82659 3.84047 3.94577 4.00687 4.07280 4.13333 4.30367 4.37244 4.50121 4.63037 4.63758 4.67082 4.78968 4.91405 5.00170 5.08264 5.23220 5.32126 5.39120 6.16764 6.43288 6.54683 7.03731 8.70156 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.046618 B = 0.001881 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.487603 B =14879.364812 C =15448.799579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.419 3.581 3 O -0.506 6.506 4 C -0.346 4.346 5 C -0.015 4.015 6 C -0.188 4.188 7 C 0.525 3.475 8 O -0.542 6.542 9 O -0.346 6.346 10 C 0.080 3.920 11 C -0.083 4.083 12 C -0.094 4.094 13 S -0.180 6.180 14 C -0.544 4.544 15 H 0.073 0.927 16 C 0.018 3.982 17 N -0.905 5.905 18 Si 0.992 3.008 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.266 1.266 22 C -0.164 4.164 23 S 0.415 5.585 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.272 0.728 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.295 15.856 0.023 30.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.301 3.699 3 O -0.387 6.387 4 C -0.464 4.464 5 C -0.046 4.046 6 C -0.202 4.202 7 C 0.369 3.631 8 O -0.433 6.433 9 O -0.262 6.262 10 C 0.005 3.995 11 C -0.122 4.122 12 C -0.243 4.243 13 S 0.049 5.951 14 C -0.691 4.691 15 H 0.091 0.909 16 C -0.188 4.188 17 N -0.541 5.541 18 Si 0.814 3.186 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.190 1.190 22 C -0.304 4.304 23 S 0.684 5.316 24 H 0.139 0.861 25 H 0.109 0.891 26 H 0.139 0.861 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -27.989 15.032 0.023 31.770 hybrid contribution 4.290 1.311 0.003 4.486 sum -23.699 16.343 0.026 28.787 Atomic orbital electron populations 1.22386 0.89564 1.06786 1.07017 1.20907 0.93561 0.85443 0.69965 1.90628 1.73411 1.35212 1.39419 1.24264 0.97641 1.02759 1.21707 1.20690 0.95071 0.96147 0.92737 1.18089 0.90238 0.93813 1.18086 1.20905 0.89616 0.80650 0.71891 1.90856 1.53348 1.51340 1.47793 1.86481 1.29437 1.26530 1.83763 1.23093 0.76854 0.96517 1.03040 1.21097 0.93724 0.92616 1.04755 1.23081 0.98770 0.98816 1.03630 1.84558 1.09875 1.03602 1.97065 1.23035 0.91188 0.95738 1.59188 0.90869 1.26033 1.04872 0.94173 0.93694 1.70123 1.38078 0.98196 1.47727 0.85089 0.76426 0.77763 0.79291 1.19050 1.19858 1.19038 1.26983 0.98816 1.06907 0.97716 1.82543 1.00691 0.89454 1.58953 0.86103 0.89087 0.86101 0.84454 0.90862 0.90852 0.89888 0.89880 0.91423 0.91429 0.91863 0.77318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.94 9.59 71.24 0.68 -0.26 16 2 C 0.42 6.37 7.05 26.48 0.19 6.56 16 3 O -0.51 -12.72 17.42 -3.46 -0.06 -12.78 16 4 C -0.35 -4.97 6.19 22.62 0.14 -4.83 16 5 C -0.02 -0.32 9.47 21.96 0.21 -0.11 16 6 C -0.19 -3.79 5.81 -21.12 -0.12 -3.91 16 7 C 0.52 14.21 7.92 70.18 0.56 14.77 16 8 O -0.54 -18.32 16.48 19.70 0.32 -18.00 16 9 O -0.35 -8.97 9.84 -56.79 -0.56 -9.53 16 10 C 0.08 2.23 5.48 71.98 0.39 2.62 16 11 C -0.08 -2.55 5.60 30.60 0.17 -2.38 16 12 C -0.09 -3.66 5.67 71.98 0.41 -3.25 16 13 S -0.18 -9.32 21.44 -56.49 -1.21 -10.53 16 14 C -0.54 -31.10 9.50 67.96 0.65 -30.45 16 15 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 16 C 0.02 0.99 5.49 84.86 0.47 1.46 16 17 N -0.91 -53.88 13.22 21.65 0.29 -53.59 16 18 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 C -0.16 -1.89 10.57 67.50 0.71 -1.17 16 23 S 0.42 2.19 22.36 -56.49 -1.26 0.93 16 24 H 0.12 -0.03 8.14 -2.38 -0.02 -0.05 16 25 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 26 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.14 3.49 7.92 -2.91 -0.02 3.47 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 33 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.21 1.59 8.00 -2.91 -0.02 1.57 16 Total: -1.00 -77.97 345.24 5.10 -72.87 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.11 Total: 5.94 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.45 Total: -20.97 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.29 Total: -53.59 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.29 Total: -40.31 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -7.13 SS G_CDS: -2.47 Total: -9.60 kcal Total: -77.97 5.10 -72.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815280945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.243 kcal (2) G-P(sol) polarization free energy of solvation -77.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds