Wall clock time and date at job start Tue Mar 31 2020 10:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99832 * 2 1 4 4 H 1.48499 * 109.47341 * 264.98788 * 3 2 1 5 5 H 1.48493 * 109.47529 * 24.99265 * 3 2 1 6 6 H 1.48501 * 109.46847 * 144.99013 * 3 2 1 7 7 C 1.37875 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00451 * 184.60812 * 7 2 1 9 9 C 1.50708 * 119.99772 * 4.60631 * 7 2 1 10 10 O 1.42902 * 110.64074 * 59.74322 * 9 7 2 11 11 C 1.55154 * 110.71699 * 182.88136 * 9 7 2 12 12 C 1.55389 * 101.36333 * 153.94926 * 11 9 7 13 13 N 1.47429 * 104.87323 * 323.01712 * 12 11 9 14 14 C 1.34778 * 125.64442 * 204.17069 * 13 12 11 15 15 O 1.21562 * 120.00360 * 5.65524 * 14 13 12 16 16 C 1.47735 * 119.99275 * 185.66035 * 14 13 12 17 17 C 1.39538 * 120.52870 * 353.06380 * 16 14 13 18 18 N 1.31666 * 120.62058 * 179.97438 * 17 16 14 19 19 C 1.32156 * 121.85860 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.50058 * 179.97438 * 19 18 17 21 21 C 1.38823 * 120.99774 * 359.97438 * 19 18 17 22 22 Cl 1.73599 * 120.36672 * 179.97438 * 21 19 18 23 23 C 1.38294 * 119.26134 * 359.76586 * 21 19 18 24 24 C 1.47017 * 108.70341 * 24.13322 * 13 12 11 25 25 H 0.97003 * 119.99826 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99960 * 294.95871 * 10 9 7 27 27 H 1.08998 * 111.00657 * 272.11507 * 11 9 7 28 28 H 1.09002 * 111.00858 * 35.97454 * 11 9 7 29 29 H 1.09003 * 110.34380 * 204.16607 * 12 11 9 30 30 H 1.08994 * 110.44478 * 81.92189 * 12 11 9 31 31 H 1.08004 * 119.68741 * 359.97438 * 17 16 14 32 32 H 1.08000 * 120.84430 * 180.27928 * 23 21 19 33 33 H 1.09003 * 109.88173 * 239.52499 * 24 13 12 34 34 H 1.08998 * 110.00990 * 118.42846 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3977 2.6809 0.5915 6 1 3.4897 1.4730 0.8033 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1956 0.0746 9 6 1.2546 -2.4970 -0.1059 10 8 0.5017 -2.5482 -1.3194 11 6 2.2296 -3.7004 -0.0137 12 6 1.2930 -4.8118 0.5360 13 7 0.4003 -4.1199 1.4836 14 6 -0.2474 -4.6956 2.5158 15 8 -0.0390 -5.8614 2.7900 16 6 -1.2107 -3.9097 3.3139 17 6 -1.3530 -2.5377 3.1033 18 7 -2.2113 -1.8357 3.8132 19 6 -2.9659 -2.3919 4.7447 20 9 -3.8306 -1.6261 5.4454 21 6 -2.8833 -3.7512 5.0142 22 17 -3.8818 -4.4648 6.2420 23 6 -1.9999 -4.5314 4.2906 24 6 0.3344 -2.6978 1.1165 25 1 -0.4850 0.8401 0.0004 26 1 -0.2075 -1.8928 -1.3702 27 1 2.6189 -3.9642 -0.9971 28 1 3.0415 -3.4931 0.6834 29 1 1.8742 -5.5764 1.0516 30 1 0.7150 -5.2574 -0.2734 31 1 -0.7533 -2.0470 2.3509 32 1 -1.9180 -5.5922 4.4759 33 1 0.6824 -2.0840 1.9473 34 1 -0.6892 -2.4263 0.8585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823531779.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:05 Heat of formation + Delta-G solvation = -68.748247 kcal Electronic energy + Delta-G solvation = -24058.275641 eV Core-core repulsion = 20125.845570 eV Total energy + Delta-G solvation = -3932.430071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.23512 -40.79070 -39.10824 -37.48550 -36.93926 -34.47797 -32.75993 -32.43769 -31.81694 -29.84107 -28.11506 -25.79284 -24.56831 -24.03992 -22.45486 -20.14426 -19.66852 -18.21754 -17.99363 -17.38762 -16.94126 -16.40529 -15.96575 -15.36634 -15.20071 -14.73433 -14.38341 -14.24742 -13.89802 -13.63980 -13.40246 -13.22581 -13.04751 -12.93431 -12.28280 -12.15397 -11.83443 -11.73522 -11.46219 -11.11626 -10.86792 -10.78328 -10.57164 -10.41481 -10.26873 -10.05758 -9.64187 -9.43555 -9.06997 -8.84515 -8.49216 -8.22610 -6.46625 -4.54557 0.29031 0.72913 1.63152 2.75686 3.13022 3.19076 3.22578 3.23753 3.27778 3.57984 4.14244 4.16629 4.46273 4.60995 4.81071 4.89923 5.10417 5.42750 5.46111 5.52965 5.64348 5.71907 5.82910 6.02084 6.18473 6.18812 6.35602 6.56897 6.64308 6.80961 7.07691 7.35782 7.56994 7.75984 7.89896 8.29720 8.50689 9.10075 9.20040 10.61565 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.004629 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.480039 B = 6047.015803 C = 7513.818540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.251 3.749 10 O -0.579 6.579 11 C -0.118 4.118 12 C 0.109 3.891 13 N -0.602 5.602 14 C 0.575 3.425 15 O -0.550 6.550 16 C -0.182 4.182 17 C 0.145 3.855 18 N -0.491 5.491 19 C 0.336 3.664 20 F -0.098 7.098 21 C -0.132 4.132 22 Cl -0.036 7.036 23 C 0.015 3.985 24 C 0.069 3.931 25 H 0.274 0.726 26 H 0.381 0.619 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.227 0.773 32 H 0.166 0.834 33 H 0.083 0.917 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -5.581 6.844 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.211 3.789 10 O -0.388 6.388 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.333 5.333 14 C 0.362 3.638 15 O -0.431 6.431 16 C -0.188 4.188 17 C -0.011 4.011 18 N -0.204 5.204 19 C 0.181 3.819 20 F -0.077 7.077 21 C -0.163 4.163 22 Cl -0.008 7.008 23 C -0.011 4.011 24 C -0.052 4.052 25 H 0.084 0.916 26 H 0.231 0.769 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.184 0.816 33 H 0.101 0.899 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.140 -5.726 6.902 9.878 hybrid contribution -0.385 0.801 0.665 1.110 sum -4.525 -4.925 7.567 10.099 Atomic orbital electron populations 1.69650 1.05954 1.28467 1.49534 1.25036 0.95092 0.99787 0.93064 0.86410 0.79761 0.82195 0.78593 1.20233 1.20938 1.19739 1.21517 0.94183 0.89958 1.52130 0.91280 1.19485 0.86607 0.92587 0.80255 1.86178 1.50983 1.61269 1.40348 1.22879 0.97207 0.94358 1.01145 1.22377 0.91827 0.95762 0.91302 1.48637 1.45047 1.11937 1.27654 1.17338 0.80523 0.86066 0.79833 1.90745 1.66101 1.16644 1.69593 1.21084 1.01438 0.95698 1.00535 1.25417 0.90836 0.90482 0.94330 1.67532 1.07072 1.39738 1.06105 1.18310 0.88808 0.84674 0.90099 1.91668 1.65270 1.75711 1.75052 1.21579 1.02191 0.92574 0.99918 1.98391 1.67409 1.83142 1.51829 1.21532 0.88802 1.01397 0.89415 1.23700 1.02373 0.77869 1.01306 0.91627 0.76897 0.90051 0.90211 0.91094 0.91301 0.75766 0.81645 0.89883 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.83 11.01 55.43 0.61 -20.22 16 2 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 3 Si 0.90 18.82 29.54 -169.99 -5.02 13.79 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.54 -12.52 8.11 -34.44 -0.28 -12.80 16 8 H 0.07 1.61 7.78 -52.49 -0.41 1.20 16 9 C 0.25 5.28 0.84 -89.94 -0.08 5.21 16 10 O -0.58 -12.86 13.07 -35.23 -0.46 -13.32 16 11 C -0.12 -2.13 6.26 -24.32 -0.15 -2.28 16 12 C 0.11 1.87 6.94 -2.27 -0.02 1.85 16 13 N -0.60 -10.88 3.33 -174.38 -0.58 -11.46 16 14 C 0.57 10.28 7.81 -12.38 -0.10 10.18 16 15 O -0.55 -10.77 16.67 5.31 0.09 -10.68 16 16 C -0.18 -2.91 5.89 -104.83 -0.62 -3.53 16 17 C 0.15 2.42 9.80 -17.14 -0.17 2.26 16 18 N -0.49 -8.31 10.36 -13.20 -0.14 -8.45 16 19 C 0.34 5.10 8.39 -17.20 -0.14 4.95 16 20 F -0.10 -1.44 16.86 2.25 0.04 -1.40 16 21 C -0.13 -1.79 6.34 -39.34 -0.25 -2.04 16 22 Cl -0.04 -0.42 28.64 -51.86 -1.49 -1.91 16 23 C 0.02 0.21 9.51 -38.86 -0.37 -0.16 16 24 C 0.07 1.33 3.25 -3.07 -0.01 1.32 16 25 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 26 H 0.38 8.52 7.48 45.56 0.34 8.86 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 29 H 0.07 1.14 7.98 -51.93 -0.41 0.72 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.23 4.02 2.76 -56.40 -0.16 3.86 16 32 H 0.17 2.07 7.75 -52.49 -0.41 1.66 16 33 H 0.08 1.65 6.43 -51.93 -0.33 1.32 16 34 H 0.08 1.62 6.46 -51.93 -0.34 1.29 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -24.54 308.49 -6.68 -31.22 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -2.11 Total: 11.21 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.27 Total: 6.58 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.11 Total: -40.13 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.37 Total: -24.01 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.49 Total: -1.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -24.54 -6.68 -31.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823531779.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.531 kcal (2) G-P(sol) polarization free energy of solvation -24.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds