Wall clock time and date at job start Tue Mar 31 2020 10:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99832 * 2 1 4 4 H 1.48499 * 109.47341 * 264.98788 * 3 2 1 5 5 H 1.48493 * 109.47529 * 24.99265 * 3 2 1 6 6 H 1.48501 * 109.46847 * 144.99013 * 3 2 1 7 7 C 1.37875 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00451 * 184.60812 * 7 2 1 9 9 C 1.50708 * 119.99772 * 4.60631 * 7 2 1 10 10 O 1.42902 * 110.64074 * 59.74322 * 9 7 2 11 11 C 1.55154 * 110.71699 * 182.88136 * 9 7 2 12 12 C 1.55389 * 101.36333 * 153.94926 * 11 9 7 13 13 N 1.47429 * 104.87323 * 323.01712 * 12 11 9 14 14 C 1.34778 * 125.64442 * 204.17069 * 13 12 11 15 15 O 1.21562 * 120.00360 * 5.65524 * 14 13 12 16 16 C 1.47735 * 119.99275 * 185.66035 * 14 13 12 17 17 C 1.39538 * 120.52870 * 353.06380 * 16 14 13 18 18 N 1.31666 * 120.62058 * 179.97438 * 17 16 14 19 19 C 1.32156 * 121.85860 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.50058 * 179.97438 * 19 18 17 21 21 C 1.38823 * 120.99774 * 359.97438 * 19 18 17 22 22 Cl 1.73599 * 120.36672 * 179.97438 * 21 19 18 23 23 C 1.38294 * 119.26134 * 359.76586 * 21 19 18 24 24 C 1.47017 * 108.70341 * 24.13322 * 13 12 11 25 25 H 0.97003 * 119.99826 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99960 * 294.95871 * 10 9 7 27 27 H 1.08998 * 111.00657 * 272.11507 * 11 9 7 28 28 H 1.09002 * 111.00858 * 35.97454 * 11 9 7 29 29 H 1.09003 * 110.34380 * 204.16607 * 12 11 9 30 30 H 1.08994 * 110.44478 * 81.92189 * 12 11 9 31 31 H 1.08004 * 119.68741 * 359.97438 * 17 16 14 32 32 H 1.08000 * 120.84430 * 180.27928 * 23 21 19 33 33 H 1.09003 * 109.88173 * 239.52499 * 24 13 12 34 34 H 1.08998 * 110.00990 * 118.42846 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3977 2.6809 0.5915 6 1 3.4897 1.4730 0.8033 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1956 0.0746 9 6 1.2546 -2.4970 -0.1059 10 8 0.5017 -2.5482 -1.3194 11 6 2.2296 -3.7004 -0.0137 12 6 1.2930 -4.8118 0.5360 13 7 0.4003 -4.1199 1.4836 14 6 -0.2474 -4.6956 2.5158 15 8 -0.0390 -5.8614 2.7900 16 6 -1.2107 -3.9097 3.3139 17 6 -1.3530 -2.5377 3.1033 18 7 -2.2113 -1.8357 3.8132 19 6 -2.9659 -2.3919 4.7447 20 9 -3.8306 -1.6261 5.4454 21 6 -2.8833 -3.7512 5.0142 22 17 -3.8818 -4.4648 6.2420 23 6 -1.9999 -4.5314 4.2906 24 6 0.3344 -2.6978 1.1165 25 1 -0.4850 0.8401 0.0004 26 1 -0.2075 -1.8928 -1.3702 27 1 2.6189 -3.9642 -0.9971 28 1 3.0415 -3.4931 0.6834 29 1 1.8742 -5.5764 1.0516 30 1 0.7150 -5.2574 -0.2734 31 1 -0.7533 -2.0470 2.3509 32 1 -1.9180 -5.5922 4.4759 33 1 0.6824 -2.0840 1.9473 34 1 -0.6892 -2.4263 0.8585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823531779.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:04 Heat of formation + Delta-G solvation = -84.267832 kcal Electronic energy + Delta-G solvation = -24058.948620 eV Core-core repulsion = 20125.845570 eV Total energy + Delta-G solvation = -3933.103051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.41881 -42.11115 -40.49122 -39.01836 -37.98674 -36.08493 -34.20623 -33.99524 -33.14630 -31.28566 -29.63866 -27.38824 -25.96640 -25.29347 -23.85980 -21.67500 -21.08349 -19.51674 -19.28810 -18.94983 -18.32450 -17.63098 -17.44679 -16.90848 -16.64732 -16.28122 -15.76359 -15.54350 -15.17741 -14.94836 -14.80105 -14.69194 -14.51196 -14.32864 -13.63814 -13.46561 -13.41393 -13.29201 -12.79793 -12.51407 -12.39957 -12.29186 -12.21216 -12.05833 -11.67685 -11.24708 -11.14069 -10.89109 -10.60643 -10.25962 -10.19345 -9.69545 -8.23515 -6.35882 -0.94924 -0.44491 0.54595 1.41790 1.46310 1.51883 1.57204 1.83320 2.05270 2.27801 2.42834 2.93094 3.02434 3.17359 3.40160 3.67063 3.75273 3.94441 4.04831 4.14013 4.30449 4.34570 4.52660 4.58250 4.73685 4.84148 4.93472 5.09123 5.20217 5.29201 5.48067 5.78005 6.08565 6.11942 6.39620 6.68704 6.88682 7.33912 7.40637 8.82310 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.004629 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.480039 B = 6047.015803 C = 7513.818540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.042 3.958 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.064 0.936 9 C 0.235 3.765 10 O -0.586 6.586 11 C -0.112 4.112 12 C 0.111 3.889 13 N -0.604 5.604 14 C 0.577 3.423 15 O -0.566 6.566 16 C -0.187 4.187 17 C 0.144 3.856 18 N -0.514 5.514 19 C 0.333 3.667 20 F -0.096 7.096 21 C -0.121 4.121 22 Cl -0.011 7.011 23 C 0.028 3.972 24 C 0.089 3.911 25 H 0.272 0.728 26 H 0.377 0.623 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.212 0.788 32 H 0.185 0.815 33 H 0.075 0.925 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -6.369 7.794 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.161 4.161 3 Si 0.777 3.223 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.082 0.918 9 C 0.195 3.805 10 O -0.394 6.394 11 C -0.150 4.150 12 C -0.010 4.010 13 N -0.335 5.335 14 C 0.366 3.634 15 O -0.447 6.447 16 C -0.193 4.193 17 C -0.013 4.013 18 N -0.228 5.228 19 C 0.179 3.821 20 F -0.074 7.074 21 C -0.151 4.151 22 Cl 0.018 6.982 23 C 0.002 3.998 24 C -0.033 4.033 25 H 0.082 0.918 26 H 0.226 0.774 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.228 0.772 32 H 0.202 0.798 33 H 0.092 0.908 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.388 -6.523 7.854 11.113 hybrid contribution -0.362 1.032 0.424 1.173 sum -4.750 -5.491 8.278 11.011 Atomic orbital electron populations 1.69713 1.06427 1.28649 1.49670 1.25531 0.95716 1.01733 0.93083 0.85685 0.78817 0.79699 0.78123 1.20564 1.21146 1.19644 1.21751 0.94182 0.91215 1.52328 0.91820 1.19687 0.87375 0.93079 0.80378 1.86169 1.50942 1.61053 1.41215 1.22854 0.96932 0.93348 1.01856 1.22411 0.91655 0.95597 0.91352 1.48652 1.45379 1.11465 1.27998 1.17514 0.80398 0.85921 0.79576 1.90733 1.66735 1.17259 1.70023 1.20928 1.01853 0.95245 1.01274 1.25052 0.91067 0.90739 0.94400 1.67428 1.07781 1.40567 1.07022 1.18388 0.88605 0.85333 0.89823 1.91675 1.65087 1.75807 1.74868 1.21505 1.01844 0.91863 0.99914 1.98408 1.66570 1.82629 1.50605 1.21688 0.87773 1.02130 0.88244 1.23323 1.01337 0.78458 1.00194 0.91809 0.77380 0.89326 0.89605 0.89653 0.91040 0.77247 0.79793 0.90763 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.33 11.01 21.45 0.24 -42.10 16 2 C 0.04 1.93 5.29 84.65 0.45 2.38 16 3 Si 0.95 38.48 29.54 68.60 2.03 40.51 16 4 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.56 -25.83 8.11 25.60 0.21 -25.63 16 8 H 0.06 2.95 7.78 -2.91 -0.02 2.93 16 9 C 0.24 9.86 0.84 -10.35 -0.01 9.85 16 10 O -0.59 -26.07 13.07 -148.98 -1.95 -28.01 16 11 C -0.11 -3.94 6.26 32.15 0.20 -3.74 16 12 C 0.11 3.67 6.94 87.02 0.60 4.27 16 13 N -0.60 -21.41 3.33 -823.90 -2.74 -24.16 16 14 C 0.58 20.00 7.81 86.75 0.68 20.68 16 15 O -0.57 -21.18 16.67 -3.91 -0.07 -21.25 16 16 C -0.19 -5.80 5.89 -20.00 -0.12 -5.92 16 17 C 0.14 4.76 9.80 85.03 0.83 5.60 16 18 N -0.51 -17.19 10.36 -195.66 -2.03 -19.22 16 19 C 0.33 9.68 8.39 84.78 0.71 10.39 16 20 F -0.10 -2.67 16.86 44.97 0.76 -1.91 16 21 C -0.12 -3.02 6.34 22.42 0.14 -2.88 16 22 Cl -0.01 -0.23 28.64 -2.72 -0.08 -0.30 16 23 C 0.03 0.72 9.51 22.74 0.22 0.94 16 24 C 0.09 3.43 3.25 86.73 0.28 3.71 16 25 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 26 H 0.38 17.09 7.48 -74.06 -0.55 16.54 16 27 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.09 2.89 8.04 -2.39 -0.02 2.87 16 29 H 0.09 2.58 7.98 -2.39 -0.02 2.56 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.21 7.64 2.76 -6.59 -0.02 7.62 16 32 H 0.18 4.08 7.75 -2.91 -0.02 4.05 16 33 H 0.07 3.00 6.43 -2.39 -0.02 2.99 16 34 H 0.07 2.95 6.46 -2.39 -0.02 2.93 16 Total: -1.00 -50.10 308.49 0.99 -49.11 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.63 Total: 27.66 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 4.20 Total: 19.66 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -4.53 Total: -85.47 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -2.01 Total: -49.26 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.76 Total: -1.91 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.30 kcal Total: -50.10 0.99 -49.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823531779.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.155 kcal (2) G-P(sol) polarization free energy of solvation -50.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds