Wall clock time and date at job start Tue Mar 31 2020 10:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47329 * 2 1 4 4 C 1.53001 * 109.47163 * 119.99843 * 2 1 3 5 5 S 1.81404 * 109.47069 * 294.99974 * 4 2 1 6 6 O 1.42106 * 110.54032 * 68.37273 * 5 4 2 7 7 O 1.42095 * 110.53950 * 291.62483 * 5 4 2 8 8 O 1.52202 * 104.45070 * 179.97438 * 5 4 2 9 9 C 1.35681 * 113.99459 * 74.99889 * 8 5 4 10 10 C 1.39310 * 119.81715 * 269.72320 * 9 8 5 11 11 C 1.36435 * 120.18248 * 179.71645 * 10 9 8 12 12 C 1.40837 * 119.81135 * 0.56182 * 11 10 9 13 13 C 1.41217 * 120.17878 * 179.69378 * 12 11 10 14 14 H 1.07996 * 119.99831 * 204.56463 * 13 12 11 15 15 C 1.39886 * 119.99987 * 24.56851 * 13 12 11 16 16 N 1.30878 * 120.00347 * 17.91925 * 15 13 12 17 17 Si 1.86804 * 119.99872 * 197.92492 * 15 13 12 18 18 H 1.48498 * 109.47439 * 89.99791 * 17 15 13 19 19 H 1.48500 * 109.46947 * 210.00182 * 17 15 13 20 20 H 1.48504 * 109.46747 * 329.99626 * 17 15 13 21 21 C 1.40831 * 119.63794 * 359.71654 * 12 11 10 22 22 C 1.36435 * 119.81815 * 0.02562 * 21 12 11 23 23 C 1.50701 * 109.46914 * 239.99656 * 2 1 3 24 24 O 1.20831 * 119.99806 * 239.99723 * 23 2 1 25 25 O 1.34227 * 120.00338 * 60.00365 * 23 2 1 26 26 H 1.08999 * 109.46669 * 60.00234 * 1 2 3 27 27 H 1.09007 * 109.46649 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46916 * 299.99967 * 1 2 3 29 29 H 1.08997 * 109.47376 * 174.99884 * 4 2 1 30 30 H 1.09009 * 109.47011 * 54.99719 * 4 2 1 31 31 H 1.07999 * 119.90863 * 359.97438 * 10 9 8 32 32 H 1.08003 * 120.09662 * 180.27778 * 11 10 9 33 33 H 0.96997 * 120.00116 * 179.97438 * 16 15 13 34 34 H 1.08009 * 120.08921 * 179.97438 * 21 12 11 35 35 H 1.07997 * 119.91356 * 179.97438 * 22 21 12 36 36 H 0.96691 * 117.00659 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 1.5602 0.2157 2.7266 6 8 0.1520 0.1684 2.9114 7 8 2.2660 1.4475 2.7869 8 8 2.1181 -0.5945 3.8880 9 6 3.4616 -0.4846 4.0423 10 6 4.3091 -1.3766 3.3891 11 6 5.6614 -1.2694 3.5344 12 6 6.1995 -0.2607 4.3570 13 6 7.5978 -0.1467 4.5180 14 1 8.0030 0.3212 5.4030 15 6 8.4580 -0.6397 3.5312 16 7 8.0035 -0.8809 2.3278 17 14 10.2554 -0.9541 3.9311 18 1 10.4179 -2.3476 4.4181 19 1 11.0761 -0.7579 2.7091 20 1 10.7012 -0.0066 4.9841 21 6 5.3353 0.6332 5.0184 22 6 3.9855 0.5157 4.8582 23 6 2.0323 -0.7105 -1.2304 24 8 2.7270 -1.6929 -1.1195 25 8 1.7081 -0.2520 -2.4496 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1263 -0.7995 1.2056 30 1 1.6053 -1.7198 1.2952 31 1 3.8947 -2.1526 2.7626 32 1 6.3174 -1.9589 3.0237 33 1 8.6001 -1.2224 1.6435 34 1 5.7401 1.4093 5.6513 35 1 3.3214 1.2001 5.3650 36 1 2.0541 -0.7407 -3.2088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827571567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:50 Heat of formation + Delta-G solvation = -188.217777 kcal Electronic energy + Delta-G solvation = -24360.453276 eV Core-core repulsion = 20516.053878 eV Total energy + Delta-G solvation = -3844.399398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44157 -39.84713 -37.04438 -36.64432 -36.34658 -35.61602 -34.93886 -33.81252 -30.06496 -29.54409 -27.71959 -25.53890 -24.91804 -22.01205 -21.56194 -20.70243 -19.48693 -18.42688 -17.82105 -17.65301 -17.00904 -16.81055 -16.15364 -15.87512 -15.56573 -14.81061 -14.42723 -14.28367 -14.05792 -13.68619 -13.11813 -13.02150 -12.78766 -12.51561 -12.31022 -12.14098 -11.98017 -11.72169 -11.61881 -11.56524 -11.51125 -11.46963 -11.40848 -11.29846 -11.06347 -10.77779 -10.63831 -10.29223 -10.17822 -9.66990 -9.44086 -7.95885 -7.68448 -7.17651 -4.73177 0.63047 2.10960 2.28393 2.77417 2.79549 2.88333 2.91491 2.92647 3.09663 3.65308 4.00726 4.22010 4.32609 4.45084 4.72221 4.81935 5.20300 5.26450 5.36652 5.48732 5.61908 5.85220 5.92439 6.00373 6.01432 6.08192 6.36608 6.63494 6.66961 6.81776 6.89790 7.20816 7.52622 7.58285 7.66693 7.78232 7.85371 8.20431 8.45131 8.53719 9.74459 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.004518 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.143909 B = 6196.400478 C = 7599.913515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 H 0.122 0.878 4 C -0.651 4.651 5 S 2.570 3.430 6 O -0.957 6.957 7 O -0.953 6.953 8 O -0.634 6.634 9 C -0.108 4.108 10 C -0.096 4.096 11 C -0.155 4.155 12 C 0.120 3.880 13 C -0.427 4.427 14 H 0.090 0.910 15 C 0.070 3.930 16 N -0.766 5.766 17 Si 0.919 3.081 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.217 4.217 22 C -0.040 4.040 23 C 0.489 3.511 24 O -0.503 6.503 25 O -0.515 6.515 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.290 0.710 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -0.286 -6.315 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.085 4.085 3 H 0.140 0.860 4 C -0.774 4.774 5 S 2.668 3.332 6 O -0.955 6.955 7 O -0.952 6.952 8 O -0.594 6.594 9 C -0.153 4.153 10 C -0.117 4.117 11 C -0.176 4.176 12 C 0.116 3.884 13 C -0.455 4.455 14 H 0.108 0.892 15 C -0.152 4.152 16 N -0.389 5.389 17 Si 0.742 3.258 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.238 4.238 22 C -0.061 4.061 23 C 0.330 3.670 24 O -0.389 6.389 25 O -0.327 6.327 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -6.762 -0.040 -5.747 8.875 hybrid contribution 1.171 -0.979 -1.185 1.932 sum -5.591 -1.019 -6.932 8.964 Atomic orbital electron populations 1.22264 0.90884 1.04660 1.05462 1.20578 0.98588 1.00808 0.88489 0.85971 1.31004 1.14133 1.15407 1.16813 1.07052 0.74678 0.75676 0.75778 1.93517 1.31175 1.86987 1.83807 1.93593 1.73383 1.44191 1.84022 1.85660 1.30964 1.79800 1.62957 1.17585 0.74097 1.07784 1.15881 1.20565 0.94326 0.97354 0.99423 1.20969 0.92348 1.00450 1.03785 1.17837 0.93386 0.88579 0.88628 1.19883 0.90851 1.30628 1.04149 0.89181 1.26137 1.02563 0.92465 0.94009 1.69820 1.38784 1.28331 1.01991 0.86117 0.80049 0.80221 0.79428 1.18806 1.19906 1.18132 1.20658 0.91784 1.02497 1.08822 1.20370 0.95727 0.94614 0.95399 1.23145 0.76907 0.82533 0.84451 1.90748 1.35121 1.25946 1.87109 1.84508 1.72359 1.59115 1.16742 0.89929 0.90913 0.89006 0.83320 0.84493 0.87712 0.85236 0.89883 0.87362 0.87698 0.73144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 8.81 37.16 0.33 -1.69 16 2 C -0.06 -0.87 2.83 -91.77 -0.26 -1.13 16 3 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 4 C -0.65 -10.13 4.25 37.16 0.16 -9.97 16 5 S 2.57 47.06 4.82 -107.50 -0.52 46.55 16 6 O -0.96 -18.15 15.84 -67.04 -1.06 -19.21 16 7 O -0.95 -20.02 16.25 -67.03 -1.09 -21.11 16 8 O -0.63 -12.92 10.03 -51.07 -0.51 -13.43 16 9 C -0.11 -2.40 4.82 -38.78 -0.19 -2.59 16 10 C -0.10 -2.11 8.38 -39.83 -0.33 -2.44 16 11 C -0.16 -3.68 8.64 -39.25 -0.34 -4.02 16 12 C 0.12 2.91 5.57 -106.80 -0.60 2.31 16 13 C -0.43 -10.03 9.04 -37.83 -0.34 -10.37 16 14 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.07 1.56 5.13 -17.34 -0.09 1.47 16 16 N -0.77 -17.70 10.96 55.54 0.61 -17.09 16 17 Si 0.92 16.50 29.60 -169.99 -5.03 11.47 16 18 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 21 C -0.22 -4.98 9.74 -39.25 -0.38 -5.36 16 22 C -0.04 -0.91 8.98 -39.83 -0.36 -1.27 16 23 C 0.49 6.63 7.63 36.01 0.27 6.90 16 24 O -0.50 -8.45 16.68 -18.75 -0.31 -8.77 16 25 O -0.52 -5.17 13.33 -39.25 -0.52 -5.70 16 26 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 27 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.09 1.15 5.61 -51.93 -0.29 0.85 16 29 H 0.15 2.52 6.43 -51.93 -0.33 2.18 16 30 H 0.14 1.89 8.14 -51.92 -0.42 1.47 16 31 H 0.10 2.01 7.51 -52.49 -0.39 1.62 16 32 H 0.13 3.09 6.16 -52.48 -0.32 2.77 16 33 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 34 H 0.11 2.26 8.06 -52.48 -0.42 1.83 16 35 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.41 2.35 9.10 45.56 0.41 2.76 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -30.53 322.32 -8.72 -39.25 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -3.01 Total: 11.34 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -2.13 Total: -28.15 kcal Atomic # 7 Polarization: -17.70 SS G_CDS: 0.61 Total: -17.09 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: -3.50 Total: -68.22 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.03 Total: 11.47 kcal Atomic # 16 Polarization: 47.06 SS G_CDS: -0.52 Total: 46.55 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.53 -8.72 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827571567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.972 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds