Wall clock time and date at job start Tue Mar 31 2020 10:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47143 * 2 1 4 4 O 1.33914 * 125.60613 * 269.99939 * 3 2 1 5 5 C 1.34940 * 109.38115 * 179.97438 * 4 3 2 6 6 C 1.46461 * 125.99743 * 180.02562 * 5 4 3 7 7 O 1.21624 * 120.00080 * 179.97438 * 6 5 4 8 8 O 1.34898 * 120.00308 * 359.97377 * 6 5 4 9 9 C 1.36646 * 108.00652 * 359.97438 * 5 4 3 10 10 C 1.35161 * 125.61063 * 89.99603 * 3 2 1 11 11 C 1.50696 * 126.43895 * 0.02562 * 10 3 2 12 12 O 1.45197 * 109.47360 * 179.97438 * 11 10 3 13 13 C 1.34231 * 117.00057 * 180.02562 * 12 11 10 14 14 O 1.20824 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00029 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.46977 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99717 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00504 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99723 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99633 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00138 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47183 * 89.99812 * 21 19 17 23 23 H 1.48497 * 109.46891 * 209.99601 * 21 19 17 24 24 H 1.48497 * 109.47073 * 329.99998 * 21 19 17 25 25 H 1.09006 * 109.47303 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47676 * 300.00127 * 1 2 3 27 27 H 1.09000 * 109.47302 * 60.00401 * 1 2 3 28 28 H 1.09004 * 109.47274 * 239.99461 * 2 1 3 29 29 H 1.09000 * 109.47302 * 119.99599 * 2 1 3 30 30 H 0.96695 * 117.00568 * 179.97438 * 8 6 5 31 31 H 1.07995 * 126.64736 * 180.26166 * 9 5 4 32 32 H 1.09001 * 109.46939 * 299.97672 * 11 10 3 33 33 H 1.09003 * 109.47493 * 59.96939 * 11 10 3 34 34 H 1.08993 * 109.47229 * 299.99414 * 15 13 12 35 35 H 1.08997 * 109.47007 * 59.99768 * 15 13 12 36 36 H 0.96999 * 119.99745 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2922 2.1559 -1.0888 5 6 2.7236 3.3776 -0.7117 6 6 3.1088 4.4693 -1.6090 7 8 3.4832 5.5311 -1.1490 8 8 3.0484 4.2971 -2.9455 9 6 2.7368 3.4180 0.6541 10 6 2.2946 2.1628 1.0989 11 6 2.1402 1.7248 2.5325 12 8 2.5249 2.8118 3.4148 13 6 2.4449 2.5826 4.7350 14 8 2.0654 1.5093 5.1399 15 6 2.8282 3.6639 5.7122 16 16 2.6128 3.0535 7.4025 17 6 3.1169 4.4780 8.3087 18 1 3.4320 5.3681 7.7844 19 6 3.1090 4.4563 9.6966 20 7 3.4851 5.5207 10.3736 21 14 2.5648 2.9166 10.6036 22 1 3.7406 2.0421 10.8441 23 1 1.9567 3.2971 11.9038 24 1 1.5645 2.1868 9.7838 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3123 5.0462 -3.4971 31 1 3.0279 4.2549 1.2714 32 1 1.1009 1.4551 2.7200 33 1 2.7790 0.8616 2.7195 34 1 3.8705 3.9418 5.5561 35 1 2.1925 4.5356 5.5573 36 1 3.4800 5.5054 11.3434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830389233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:14 Heat of formation + Delta-G solvation = -190.643387 kcal Electronic energy + Delta-G solvation = -22574.377025 eV Core-core repulsion = 18729.872445 eV Total energy + Delta-G solvation = -3844.504581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.06282 -41.53577 -41.06782 -37.85070 -37.31086 -35.64829 -34.68930 -34.36314 -31.72921 -30.75524 -28.09978 -27.78682 -26.10678 -23.56803 -22.90072 -22.04399 -21.19339 -19.94113 -19.35037 -18.73819 -18.65870 -18.03464 -17.61631 -17.21585 -16.92405 -16.72809 -16.36915 -15.97900 -15.38893 -15.26242 -14.93842 -14.79267 -14.49737 -14.29922 -14.10991 -13.79594 -13.44196 -13.37442 -13.18810 -13.01946 -12.79261 -12.77322 -12.51317 -12.21818 -12.18772 -11.95667 -11.89299 -11.66930 -11.17983 -10.97571 -10.63255 -9.72675 -9.05854 -8.52218 -6.25872 -0.38150 0.74833 0.91689 1.05751 1.20499 1.32938 1.36285 1.50133 1.67413 1.80803 2.08279 2.24103 2.63220 2.85995 3.33874 3.42269 3.72809 3.90920 4.04560 4.09255 4.14515 4.18671 4.27688 4.36070 4.41158 4.43798 4.55944 4.81575 4.92751 4.99940 5.09952 5.19864 5.29705 5.34672 5.68884 5.69813 6.11956 6.59977 6.77089 6.91494 8.60270 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.002654 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.419206 B =10545.967192 C =11843.684986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.054 4.054 3 C 0.071 3.929 4 O -0.146 6.146 5 C -0.094 4.094 6 C 0.581 3.419 7 O -0.523 6.523 8 O -0.498 6.498 9 C -0.081 4.081 10 C -0.211 4.211 11 C 0.139 3.861 12 O -0.349 6.349 13 C 0.495 3.505 14 O -0.511 6.511 15 C -0.093 4.093 16 S -0.156 6.156 17 C -0.533 4.533 18 H 0.063 0.937 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.916 3.084 22 H -0.261 1.261 23 H -0.260 1.260 24 H -0.231 1.231 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.441 0.559 31 H 0.165 0.835 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 -11.105 -27.683 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 C 0.017 3.983 4 O -0.042 6.042 5 C -0.143 4.143 6 C 0.426 3.574 7 O -0.414 6.414 8 O -0.313 6.313 9 C -0.100 4.100 10 C -0.212 4.212 11 C 0.066 3.934 12 O -0.266 6.266 13 C 0.338 3.662 14 O -0.399 6.399 15 C -0.241 4.241 16 S 0.071 5.929 17 C -0.681 4.681 18 H 0.081 0.919 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.184 1.184 24 H -0.155 1.155 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.304 0.696 31 H 0.183 0.817 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.953 -12.468 -27.039 30.184 hybrid contribution 0.744 1.989 0.089 2.126 sum -4.209 -10.479 -26.950 29.220 Atomic orbital electron populations 1.21808 0.92478 1.04163 1.02481 1.20609 0.97382 0.84202 1.06899 1.23188 0.97279 0.95667 0.82141 1.84125 1.64344 1.21393 1.34290 1.20567 1.15153 0.86025 0.92547 1.18687 0.73449 0.83896 0.81399 1.91030 1.45596 1.26799 1.78012 1.84608 1.80456 1.49403 1.16799 1.21930 0.97011 0.98865 0.92222 1.19832 1.11036 0.95384 0.94969 1.21234 1.02330 0.87548 0.82292 1.86436 1.79137 1.44306 1.16746 1.22725 0.73857 0.87774 0.81892 1.90665 1.43211 1.26586 1.79400 1.22946 1.07748 0.99652 0.93756 1.84556 1.88143 1.22396 0.97829 1.22429 1.51308 0.99613 0.94730 0.91859 1.25603 0.93568 0.99503 0.97382 1.70020 1.46436 1.30429 1.08508 0.85851 0.80864 0.79743 0.79823 1.18514 1.18416 1.15510 0.89027 0.92628 0.92339 0.87175 0.86440 0.69585 0.81747 0.88548 0.88367 0.85752 0.85735 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 71.98 0.71 -0.51 16 2 C -0.05 -0.46 6.26 29.85 0.19 -0.27 16 3 C 0.07 1.14 6.57 24.98 0.16 1.30 16 4 O -0.15 -2.81 10.67 -4.92 -0.05 -2.86 16 5 C -0.09 -2.03 7.18 24.04 0.17 -1.85 16 6 C 0.58 11.91 8.30 69.96 0.58 12.49 16 7 O -0.52 -13.61 17.65 19.43 0.34 -13.27 16 8 O -0.50 -6.65 13.44 -56.74 -0.76 -7.42 16 9 C -0.08 -1.83 9.98 22.40 0.22 -1.61 16 10 C -0.21 -4.19 6.10 -20.07 -0.12 -4.31 16 11 C 0.14 2.92 5.50 71.23 0.39 3.31 16 12 O -0.35 -9.58 9.63 -51.43 -0.50 -10.07 16 13 C 0.50 16.47 7.98 71.24 0.57 17.04 16 14 O -0.51 -19.16 15.61 21.97 0.34 -18.81 16 15 C -0.09 -3.44 6.27 71.24 0.45 -2.99 16 16 S -0.16 -7.48 18.55 -56.49 -1.05 -8.53 16 17 C -0.53 -30.35 10.04 67.96 0.68 -29.67 16 18 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 19 C 0.05 2.59 5.50 84.86 0.47 3.06 16 20 N -0.92 -55.17 13.97 21.65 0.30 -54.86 16 21 Si 0.92 43.39 27.74 68.60 1.90 45.30 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.23 -10.73 6.74 99.48 0.67 -10.06 16 25 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.12 0.70 7.86 -2.39 -0.02 0.69 16 30 H 0.44 1.28 9.11 -74.06 -0.67 0.61 16 31 H 0.16 3.92 7.97 -2.91 -0.02 3.89 16 32 H 0.10 1.83 8.13 -2.39 -0.02 1.81 16 33 H 0.10 1.83 8.13 -2.39 -0.02 1.81 16 34 H 0.12 4.31 8.14 -2.40 -0.02 4.29 16 35 H 0.12 4.32 8.14 -2.40 -0.02 4.30 16 36 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.37 344.19 5.42 -68.95 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.42 Total: 5.59 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 4.47 Total: -4.00 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.30 Total: -54.86 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.62 Total: -52.44 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.90 Total: 45.30 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.05 Total: -8.53 kcal Total: -74.37 5.42 -68.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830389233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.697 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds