Wall clock time and date at job start Tue Mar 31 2020 10:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86791 * 120.00213 * 2 1 4 4 H 1.48506 * 109.47080 * 90.00369 * 3 2 1 5 5 H 1.48497 * 109.47630 * 210.00089 * 3 2 1 6 6 H 1.48500 * 109.47633 * 330.00477 * 3 2 1 7 7 C 1.38652 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99734 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35760 * 117.00021 * 174.94048 * 9 7 2 11 11 C 1.38898 * 120.05382 * 5.60307 * 10 9 7 12 12 C 1.38074 * 119.94206 * 179.72325 * 11 10 9 13 13 C 1.38430 * 120.05400 * 0.54826 * 12 11 10 14 14 Cl 1.73601 * 119.94562 * 179.74822 * 13 12 11 15 15 C 1.38390 * 120.11508 * 359.72272 * 13 12 11 16 16 C 1.38108 * 120.05423 * 0.02562 * 15 13 12 17 17 C 1.50695 * 120.03170 * 180.02562 * 16 15 13 18 18 S 1.81400 * 109.47128 * 269.97699 * 17 16 15 19 19 C 1.81402 * 103.00147 * 179.97438 * 18 17 16 20 20 H 1.08993 * 110.80400 * 308.63064 * 19 18 17 21 21 C 1.54809 * 110.90712 * 184.99936 * 19 18 17 22 22 C 1.54106 * 104.18532 * 220.92215 * 21 19 18 23 23 O 1.43739 * 107.29410 * 357.96868 * 22 21 19 24 24 C 1.44379 * 106.97570 * 26.51545 * 23 22 21 25 25 H 0.97009 * 119.99528 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.03075 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.96980 * 180.27510 * 12 11 10 28 28 H 1.07995 * 119.97229 * 179.97438 * 15 13 12 29 29 H 1.09006 * 109.47106 * 29.97549 * 17 16 15 30 30 H 1.09005 * 109.47370 * 149.97568 * 17 16 15 31 31 H 1.08994 * 110.48892 * 339.59724 * 21 19 18 32 32 H 1.08999 * 110.48539 * 102.11999 * 21 19 18 33 33 H 1.08995 * 109.87848 * 117.39739 * 22 21 19 34 34 H 1.08999 * 109.87457 * 238.39865 * 22 21 19 35 35 H 1.08998 * 110.61758 * 201.43070 * 24 23 22 36 36 H 1.09002 * 110.61862 * 78.43476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 1.4001 5 1 3.5472 1.4401 -0.7000 6 1 1.4472 2.6527 -0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5046 -0.1078 11 6 3.4572 -3.4394 -0.0939 12 6 4.2027 -4.5970 -0.1974 13 6 3.5685 -5.8207 -0.3262 14 17 4.5086 -7.2737 -0.4626 15 6 2.1864 -5.8879 -0.3459 16 6 1.4362 -4.7334 -0.2375 17 6 -0.0688 -4.8072 -0.2585 18 16 -0.6574 -4.6664 -1.9686 19 6 -2.4593 -4.7759 -1.7903 20 1 -2.7377 -5.6497 -1.2014 21 6 -3.1510 -4.7996 -3.1751 22 6 -4.3856 -3.8949 -2.9961 23 8 -4.3998 -3.4573 -1.6270 24 6 -3.0328 -3.4797 -1.1630 25 1 -0.4850 0.8402 0.0004 26 1 3.9525 -2.4844 0.0018 27 1 5.2814 -4.5471 -0.1822 28 1 1.6941 -6.8438 -0.4469 29 1 -0.3917 -5.7608 0.1596 30 1 -0.4809 -3.9917 0.3359 31 1 -2.4884 -4.3940 -3.9395 32 1 -3.4535 -5.8145 -3.4330 33 1 -4.3131 -3.0334 -3.6598 34 1 -5.2926 -4.4576 -3.2171 35 1 -2.9976 -3.5316 -0.0749 36 1 -2.4904 -2.6060 -1.5244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842174752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:08 Heat of formation + Delta-G solvation = -61.400644 kcal Electronic energy + Delta-G solvation = -21199.364733 eV Core-core repulsion = 17801.173703 eV Total energy + Delta-G solvation = -3398.191030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.38928 -39.02290 -36.90928 -35.63988 -32.56455 -32.15332 -32.04454 -29.21062 -28.97476 -26.51752 -25.50072 -22.76031 -21.95539 -21.56872 -20.77872 -18.20018 -17.20507 -16.73696 -16.37559 -15.49351 -15.20578 -15.12369 -14.88475 -14.59009 -14.03204 -13.85560 -13.61035 -13.12792 -13.01874 -12.86957 -12.49006 -12.40938 -11.91813 -11.79794 -11.64518 -11.43755 -11.22037 -11.18892 -11.00633 -10.86404 -10.55766 -10.49710 -10.32756 -9.65914 -9.58987 -9.49038 -8.94760 -8.31578 -7.32930 -7.20627 -6.61494 -4.18560 1.49522 2.00111 2.29574 2.76054 2.97598 3.04530 3.06470 3.10879 3.83509 4.10970 4.31243 4.52905 4.78055 4.90584 5.00925 5.01625 5.19303 5.20895 5.32416 5.39565 5.55200 5.70075 5.72114 5.74603 5.92013 5.95532 5.98584 6.06948 6.15916 6.33095 6.53141 6.77218 6.81884 6.90882 7.02805 7.15514 7.44537 7.81013 8.83162 9.46307 10.54507 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.007776 B = 0.006163 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3600.140823 B = 4542.339478 C = 7853.243757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.046 3.954 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.276 1.276 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.154 6.154 10 C 0.169 3.831 11 C -0.224 4.224 12 C -0.053 4.053 13 C -0.127 4.127 14 Cl -0.104 7.104 15 C -0.042 4.042 16 C -0.148 4.148 17 C -0.020 4.020 18 S -0.227 6.227 19 C -0.102 4.102 20 H 0.094 0.906 21 C -0.130 4.130 22 C 0.051 3.949 23 O -0.380 6.380 24 C 0.057 3.943 25 H 0.273 0.727 26 H 0.138 0.862 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -8.300 -2.787 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.191 1.191 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.055 6.055 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.073 4.073 13 C -0.155 4.155 14 Cl -0.076 7.076 15 C -0.063 4.063 16 C -0.151 4.151 17 C -0.167 4.167 18 S 0.005 5.995 19 C -0.231 4.231 20 H 0.112 0.888 21 C -0.169 4.169 22 C -0.027 4.027 23 O -0.299 6.299 24 C -0.022 4.022 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.766 -8.003 -3.609 8.955 hybrid contribution 0.213 0.433 0.977 1.090 sum -1.553 -7.571 -2.632 8.164 Atomic orbital electron populations 1.70021 1.05926 1.28058 1.44079 1.25291 0.95872 0.98851 0.96052 0.85714 0.79073 0.79905 0.78834 1.19768 1.19052 1.20092 1.21373 0.91923 0.80567 1.53172 0.88850 1.83961 1.34234 1.11318 1.75963 1.19109 0.90098 0.87679 0.91928 1.21090 0.93440 0.98698 1.11129 1.20676 0.99259 0.90454 0.96871 1.20218 0.91158 0.86484 1.17612 1.98281 1.73579 1.38440 1.97316 1.20376 0.91342 0.97284 0.97258 1.18069 0.92527 0.90969 1.13544 1.21935 0.95209 1.04568 0.94985 1.87101 1.00983 1.96995 1.14467 1.24727 0.96297 1.01887 1.00222 0.88777 1.22752 0.96745 1.01361 0.96031 1.23108 0.97881 0.97148 0.84561 1.88844 1.26816 1.88190 1.26046 1.24074 0.81755 0.96209 1.00130 0.91734 0.84456 0.86264 0.85849 0.90389 0.88509 0.89699 0.89951 0.92172 0.89988 0.88794 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.93 13.67 55.48 0.76 -22.17 16 2 C 0.05 1.17 5.49 -17.51 -0.10 1.07 16 3 Si 0.94 19.34 29.55 -169.99 -5.02 14.31 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.14 9.49 30.89 0.29 -9.84 16 8 H 0.09 2.22 5.20 -52.49 -0.27 1.95 16 9 O -0.15 -3.94 8.81 0.03 0.00 -3.94 16 10 C 0.17 3.75 6.62 -39.11 -0.26 3.49 16 11 C -0.22 -4.51 9.17 -39.40 -0.36 -4.88 16 12 C -0.05 -0.94 9.82 -39.57 -0.39 -1.32 16 13 C -0.13 -2.20 6.32 -39.45 -0.25 -2.45 16 14 Cl -0.10 -1.57 28.95 -51.86 -1.50 -3.07 16 15 C -0.04 -0.73 9.48 -39.57 -0.38 -1.10 16 16 C -0.15 -2.87 5.16 -104.44 -0.54 -3.41 16 17 C -0.02 -0.36 5.85 36.00 0.21 -0.14 16 18 S -0.23 -3.97 21.02 -107.50 -2.26 -6.23 16 19 C -0.10 -1.48 3.62 -24.72 -0.09 -1.57 16 20 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 21 C -0.13 -1.60 6.62 -25.20 -0.17 -1.77 16 22 C 0.05 0.63 7.70 37.74 0.29 0.92 16 23 O -0.38 -6.00 11.52 -35.23 -0.41 -6.41 16 24 C 0.06 0.92 7.18 38.21 0.27 1.19 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 26 H 0.14 2.73 5.64 -52.49 -0.30 2.43 16 27 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.08 1.17 8.09 -51.92 -0.42 0.75 16 30 H 0.10 1.90 7.53 -51.92 -0.39 1.51 16 31 H 0.08 1.09 7.82 -51.93 -0.41 0.68 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -27.44 334.82 -9.14 -36.58 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.30 Total: 5.71 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.46 Total: -19.82 kcal Atomic # 7 Polarization: -22.93 SS G_CDS: 0.76 Total: -22.17 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.41 Total: -10.35 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -2.26 Total: -6.23 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.44 -9.14 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842174752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.818 kcal (2) G-P(sol) polarization free energy of solvation -27.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds