Wall clock time and date at job start Tue Mar 31 2020 10:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86791 * 120.00213 * 2 1 4 4 H 1.48506 * 109.47080 * 90.00369 * 3 2 1 5 5 H 1.48497 * 109.47630 * 210.00089 * 3 2 1 6 6 H 1.48500 * 109.47633 * 330.00477 * 3 2 1 7 7 C 1.38652 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99734 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35760 * 117.00021 * 174.94048 * 9 7 2 11 11 C 1.38898 * 120.05382 * 5.60307 * 10 9 7 12 12 C 1.38074 * 119.94206 * 179.72325 * 11 10 9 13 13 C 1.38430 * 120.05400 * 0.54826 * 12 11 10 14 14 Cl 1.73601 * 119.94562 * 179.74822 * 13 12 11 15 15 C 1.38390 * 120.11508 * 359.72272 * 13 12 11 16 16 C 1.38108 * 120.05423 * 0.02562 * 15 13 12 17 17 C 1.50695 * 120.03170 * 180.02562 * 16 15 13 18 18 S 1.81400 * 109.47128 * 269.97699 * 17 16 15 19 19 C 1.81402 * 103.00147 * 179.97438 * 18 17 16 20 20 H 1.08993 * 110.80400 * 308.63064 * 19 18 17 21 21 C 1.54809 * 110.90712 * 184.99936 * 19 18 17 22 22 C 1.54106 * 104.18532 * 220.92215 * 21 19 18 23 23 O 1.43739 * 107.29410 * 357.96868 * 22 21 19 24 24 C 1.44379 * 106.97570 * 26.51545 * 23 22 21 25 25 H 0.97009 * 119.99528 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.03075 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.96980 * 180.27510 * 12 11 10 28 28 H 1.07995 * 119.97229 * 179.97438 * 15 13 12 29 29 H 1.09006 * 109.47106 * 29.97549 * 17 16 15 30 30 H 1.09005 * 109.47370 * 149.97568 * 17 16 15 31 31 H 1.08994 * 110.48892 * 339.59724 * 21 19 18 32 32 H 1.08999 * 110.48539 * 102.11999 * 21 19 18 33 33 H 1.08995 * 109.87848 * 117.39739 * 22 21 19 34 34 H 1.08999 * 109.87457 * 238.39865 * 22 21 19 35 35 H 1.08998 * 110.61758 * 201.43070 * 24 23 22 36 36 H 1.09002 * 110.61862 * 78.43476 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 1.4001 5 1 3.5472 1.4401 -0.7000 6 1 1.4472 2.6527 -0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5046 -0.1078 11 6 3.4572 -3.4394 -0.0939 12 6 4.2027 -4.5970 -0.1974 13 6 3.5685 -5.8207 -0.3262 14 17 4.5086 -7.2737 -0.4626 15 6 2.1864 -5.8879 -0.3459 16 6 1.4362 -4.7334 -0.2375 17 6 -0.0688 -4.8072 -0.2585 18 16 -0.6574 -4.6664 -1.9686 19 6 -2.4593 -4.7759 -1.7903 20 1 -2.7377 -5.6497 -1.2014 21 6 -3.1510 -4.7996 -3.1751 22 6 -4.3856 -3.8949 -2.9961 23 8 -4.3998 -3.4573 -1.6270 24 6 -3.0328 -3.4797 -1.1630 25 1 -0.4850 0.8402 0.0004 26 1 3.9525 -2.4844 0.0018 27 1 5.2814 -4.5471 -0.1822 28 1 1.6941 -6.8438 -0.4469 29 1 -0.3917 -5.7608 0.1596 30 1 -0.4809 -3.9917 0.3359 31 1 -2.4884 -4.3940 -3.9395 32 1 -3.4535 -5.8145 -3.4330 33 1 -4.3131 -3.0334 -3.6598 34 1 -5.2926 -4.4576 -3.2171 35 1 -2.9976 -3.5316 -0.0749 36 1 -2.4904 -2.6060 -1.5244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842174752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:07 Heat of formation + Delta-G solvation = -75.611255 kcal Electronic energy + Delta-G solvation = -21199.980952 eV Core-core repulsion = 17801.173703 eV Total energy + Delta-G solvation = -3398.807248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00063 -40.19788 -38.49510 -37.05243 -34.32801 -33.72099 -33.19833 -30.62523 -30.26214 -28.05413 -27.28639 -23.95040 -23.51214 -22.87974 -22.14075 -19.92885 -18.83993 -17.98201 -17.59747 -16.94952 -16.81267 -16.51977 -16.21060 -16.11149 -15.54009 -15.39309 -14.90472 -14.76803 -14.33987 -14.20244 -13.92753 -13.82689 -13.61823 -13.13830 -12.93727 -12.79009 -12.69098 -12.59519 -12.37610 -12.14726 -12.01399 -11.88131 -11.71875 -11.25794 -10.92079 -10.77177 -10.75363 -9.79754 -8.93398 -8.61008 -8.46904 -6.12563 0.05235 0.46079 0.92546 1.33906 1.37335 1.44075 1.52503 1.60410 2.15982 2.72643 2.96452 3.10950 3.37458 3.41938 3.63004 3.72795 3.90992 3.96431 4.14821 4.16629 4.19177 4.29544 4.49549 4.50887 4.56985 4.73918 4.79774 4.81450 4.86328 5.00582 5.02547 5.09420 5.31539 5.40500 5.53226 5.74831 5.89076 5.97540 6.97282 7.70738 8.73147 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.007776 B = 0.006163 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3600.140823 B = 4542.339478 C = 7853.243757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.010 4.010 3 Si 1.009 2.991 4 H -0.264 1.264 5 H -0.254 1.254 6 H -0.275 1.275 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.198 6.198 10 C 0.139 3.861 11 C -0.233 4.233 12 C -0.051 4.051 13 C -0.115 4.115 14 Cl -0.074 7.074 15 C -0.040 4.040 16 C -0.149 4.149 17 C -0.014 4.014 18 S -0.260 6.260 19 C -0.088 4.088 20 H 0.116 0.884 21 C -0.124 4.124 22 C 0.045 3.955 23 O -0.395 6.395 24 C 0.060 3.940 25 H 0.272 0.728 26 H 0.134 0.866 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -10.794 -3.428 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.210 4.210 3 Si 0.829 3.171 4 H -0.189 1.189 5 H -0.178 1.178 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.102 6.102 10 C 0.085 3.915 11 C -0.253 4.253 12 C -0.070 4.070 13 C -0.142 4.142 14 Cl -0.045 7.045 15 C -0.061 4.061 16 C -0.152 4.152 17 C -0.161 4.161 18 S -0.029 6.029 19 C -0.217 4.217 20 H 0.134 0.866 21 C -0.162 4.162 22 C -0.033 4.033 23 O -0.314 6.314 24 C -0.019 4.019 25 H 0.081 0.919 26 H 0.151 0.849 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.822 -10.552 -4.252 11.406 hybrid contribution 0.021 0.847 1.128 1.411 sum -0.800 -9.705 -3.124 10.227 Atomic orbital electron populations 1.70164 1.07669 1.28671 1.47284 1.26388 0.96718 1.02219 0.95678 0.84714 0.77996 0.75251 0.79155 1.18926 1.17787 1.19973 1.21784 0.92532 0.81282 1.53447 0.88014 1.83960 1.35197 1.12016 1.79012 1.19667 0.91221 0.87859 0.92764 1.21206 0.92961 0.99724 1.11392 1.20947 1.00627 0.89696 0.95746 1.20454 0.91559 0.87580 1.14630 1.98303 1.72738 1.36419 1.97053 1.20675 0.91552 0.97624 0.96221 1.18396 0.93639 0.90731 1.12417 1.21881 0.94336 1.05039 0.94854 1.87117 1.04298 1.97214 1.14297 1.24762 0.93474 1.01436 1.01991 0.86561 1.22794 0.96101 1.03135 0.94210 1.23375 0.99391 0.97665 0.82833 1.88829 1.26023 1.88579 1.27999 1.23843 0.82167 0.95964 0.99940 0.91930 0.84853 0.83370 0.83004 0.87112 0.91413 0.90493 0.86748 0.92152 0.86729 0.89256 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.99 13.67 21.61 0.30 -51.70 16 2 C -0.01 -0.54 5.49 84.83 0.47 -0.07 16 3 Si 1.01 40.98 29.55 68.60 2.03 43.00 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.41 -22.40 9.49 67.92 0.64 -21.76 16 8 H 0.10 5.05 5.20 -2.91 -0.02 5.04 16 9 O -0.20 -10.75 8.81 -22.80 -0.20 -10.95 16 10 C 0.14 6.33 6.62 22.58 0.15 6.48 16 11 C -0.23 -9.42 9.17 22.39 0.21 -9.22 16 12 C -0.05 -1.69 9.82 22.28 0.22 -1.47 16 13 C -0.12 -3.64 6.32 22.35 0.14 -3.50 16 14 Cl -0.07 -1.94 28.95 -2.72 -0.08 -2.01 16 15 C -0.04 -1.30 9.48 22.28 0.21 -1.09 16 16 C -0.15 -5.75 5.16 -19.75 -0.10 -5.85 16 17 C -0.01 -0.50 5.85 71.23 0.42 -0.09 16 18 S -0.26 -9.14 21.02 -56.49 -1.19 -10.32 16 19 C -0.09 -2.47 3.62 31.89 0.12 -2.36 16 20 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 21 C -0.12 -2.81 6.62 31.59 0.21 -2.60 16 22 C 0.04 1.03 7.70 72.36 0.56 1.59 16 23 O -0.39 -12.41 11.52 -148.98 -1.72 -14.12 16 24 C 0.06 2.00 7.18 72.66 0.52 2.53 16 25 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.13 5.40 5.64 -2.91 -0.02 5.38 16 27 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 29 H 0.11 3.14 8.09 -2.39 -0.02 3.12 16 30 H 0.07 2.82 7.53 -2.39 -0.02 2.80 16 31 H 0.08 1.89 7.82 -2.39 -0.02 1.88 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 3.01 8.14 -2.39 -0.02 3.00 16 36 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 Total: -1.00 -63.20 334.82 3.99 -59.20 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 1.10 Total: 24.31 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 3.75 Total: -37.41 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.30 Total: -51.70 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.92 Total: -25.08 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.19 Total: -10.32 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.01 kcal Total: -63.20 3.99 -59.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842174752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.407 kcal (2) G-P(sol) polarization free energy of solvation -63.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds