Wall clock time and date at job start Tue Mar 31 2020 10:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47236 * 266.06716 * 3 2 1 5 5 H 1.48501 * 109.47359 * 26.06916 * 3 2 1 6 6 H 1.48508 * 109.47294 * 146.06709 * 3 2 1 7 7 C 1.37883 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 353.92266 * 7 2 1 9 9 C 1.50696 * 120.00227 * 173.92141 * 7 2 1 10 10 O 1.42902 * 110.63635 * 325.51519 * 9 7 2 11 11 C 1.55154 * 110.72414 * 88.65819 * 9 7 2 12 12 C 1.54902 * 101.58114 * 154.04331 * 11 9 7 13 13 N 1.47420 * 104.83646 * 322.98944 * 12 11 9 14 14 C 1.34770 * 125.65203 * 204.09381 * 13 12 11 15 15 O 1.21542 * 119.99974 * 180.02562 * 14 13 12 16 16 C 1.47996 * 120.00036 * 0.02562 * 14 13 12 17 17 N 1.32839 * 119.73932 * 0.02562 * 16 14 13 18 18 C 1.31528 * 121.64591 * 179.97438 * 17 16 14 19 19 Cl 1.73596 * 119.52983 * 179.97438 * 18 17 16 20 20 C 1.38847 * 120.94458 * 0.02562 * 18 17 16 21 21 C 1.38397 * 119.38270 * 359.97438 * 20 18 17 22 22 C 1.38995 * 118.48385 * 359.97438 * 21 20 18 23 23 F 1.35103 * 120.48226 * 180.02562 * 22 21 20 24 24 C 1.47023 * 108.69994 * 24.35658 * 13 12 11 25 25 H 0.96999 * 119.99577 * 0.02562 * 1 2 3 26 26 H 0.96702 * 114.00263 * 297.55082 * 10 9 7 27 27 H 1.09004 * 111.00428 * 35.96628 * 11 9 7 28 28 H 1.09000 * 111.00363 * 272.11749 * 11 9 7 29 29 H 1.09006 * 110.36712 * 204.15102 * 12 11 9 30 30 H 1.08997 * 110.46360 * 81.88267 * 12 11 9 31 31 H 1.07995 * 120.30591 * 179.97438 * 20 18 17 32 32 H 1.08001 * 120.75576 * 179.97438 * 21 20 18 33 33 H 1.09003 * 109.88369 * 118.12988 * 24 13 12 34 34 H 1.08997 * 109.88621 * 239.29653 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5798 1.9984 -1.3968 5 1 1.4076 2.6752 0.6153 6 1 3.5027 1.4655 0.7816 7 6 2.0046 -1.1941 0.0005 8 1 1.4692 -2.1267 0.1000 9 6 3.5052 -1.1978 -0.1377 10 8 3.9346 -0.1388 -0.9956 11 6 4.1849 -1.0878 1.2527 12 6 5.5507 -1.7682 0.9860 13 7 5.2463 -2.8768 0.0631 14 6 5.9833 -3.9943 -0.0924 15 8 5.6355 -4.8460 -0.8867 16 6 7.2162 -4.1844 0.7039 17 7 7.5912 -3.2505 1.5709 18 6 8.6794 -3.3809 2.2981 19 17 9.1184 -2.1257 3.4139 20 6 9.4827 -4.5078 2.1852 21 6 9.1302 -5.5065 1.2942 22 6 7.9747 -5.3436 0.5390 23 9 7.5925 -6.2934 -0.3425 24 6 4.0088 -2.5584 -0.6642 25 1 -0.4849 0.8401 -0.0004 26 1 3.6062 -0.2094 -1.9024 27 1 3.6184 -1.6317 2.0087 28 1 4.3176 -0.0451 1.5413 29 1 5.9709 -2.1529 1.9153 30 1 6.2418 -1.0658 0.5202 31 1 10.3742 -4.6040 2.7870 32 1 9.7391 -6.3922 1.1882 33 1 4.2135 -2.4918 -1.7327 34 1 3.2595 -3.3271 -0.4753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:14 Heat of formation + Delta-G solvation = -74.664389 kcal Electronic energy + Delta-G solvation = -24010.159314 eV Core-core repulsion = 20077.472700 eV Total energy + Delta-G solvation = -3932.686614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.22137 -40.86175 -39.31012 -37.62903 -36.97220 -34.86109 -33.24559 -32.36506 -31.29319 -30.17992 -28.36006 -26.08546 -24.71389 -23.72843 -22.45541 -20.34830 -19.66284 -18.18786 -17.86034 -17.57933 -17.36890 -16.37358 -16.15529 -15.45118 -15.17998 -14.98179 -14.66523 -14.43905 -14.34301 -13.89706 -13.47467 -13.40128 -13.08739 -12.70939 -12.40699 -12.10560 -11.91885 -11.73446 -11.64169 -11.48188 -11.06763 -10.56457 -10.51667 -10.42727 -10.26527 -10.14952 -9.52673 -9.26270 -9.20486 -8.65595 -8.52504 -8.19938 -6.19770 -4.31889 0.02378 0.41138 1.32771 2.47704 2.97590 3.38728 3.45064 3.51772 3.57750 3.67144 3.79262 4.15734 4.22168 4.48178 4.57635 4.82422 5.02773 5.12766 5.17205 5.22224 5.43864 5.76765 5.82843 5.91499 6.04379 6.24383 6.47644 6.57284 6.71883 6.80881 6.96373 7.09810 7.43821 7.79045 8.11887 8.24856 8.63156 8.81510 9.41109 10.89223 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.004366 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.613791 B = 6410.959573 C = 7613.356429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.944 3.056 4 H -0.291 1.291 5 H -0.324 1.324 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.219 3.781 10 O -0.563 6.563 11 C -0.126 4.126 12 C 0.100 3.900 13 N -0.582 5.582 14 C 0.570 3.430 15 O -0.530 6.530 16 C 0.080 3.920 17 N -0.417 5.417 18 C 0.156 3.844 19 Cl -0.014 7.014 20 C -0.108 4.108 21 C -0.105 4.105 22 C 0.112 3.888 23 F -0.098 7.098 24 C 0.091 3.909 25 H 0.267 0.733 26 H 0.372 0.628 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.063 0.937 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.341 -7.581 5.806 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.779 3.221 4 H -0.218 1.218 5 H -0.255 1.255 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.099 0.901 9 C 0.179 3.821 10 O -0.371 6.371 11 C -0.164 4.164 12 C -0.022 4.022 13 N -0.312 5.312 14 C 0.355 3.645 15 O -0.407 6.407 16 C -0.060 4.060 17 N -0.130 5.130 18 C -0.011 4.011 19 Cl 0.015 6.985 20 C -0.129 4.129 21 C -0.131 4.131 22 C 0.089 3.911 23 F -0.076 7.076 24 C -0.031 4.031 25 H 0.076 0.924 26 H 0.220 0.780 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.178 0.822 32 H 0.183 0.817 33 H 0.082 0.918 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.783 -6.997 6.038 22.745 hybrid contribution 0.565 -0.065 -0.582 0.814 sum 21.348 -7.062 5.456 23.138 Atomic orbital electron populations 1.69965 1.06837 1.27822 1.47604 1.25096 0.94856 1.00403 0.92559 0.85805 0.78006 0.80111 0.78180 1.21798 1.25536 1.19205 1.21176 0.88338 0.95477 1.54083 0.90134 1.20133 0.94017 0.81121 0.86879 1.86139 1.76584 1.49836 1.24546 1.23197 0.93555 1.01293 0.98349 1.22772 0.98214 0.87622 0.93622 1.48421 1.24912 1.17738 1.40149 1.17160 0.82193 0.82211 0.82938 1.90856 1.70378 1.42551 1.36918 1.21448 0.97363 0.90417 0.96725 1.67450 1.13717 1.28085 1.03732 1.21835 0.92872 0.91234 0.95146 1.98440 1.90725 1.51518 1.57820 1.21951 1.00731 0.91643 0.98533 1.21685 0.95443 1.00926 0.95042 1.18633 0.94414 0.87409 0.90640 1.91658 1.90311 1.60839 1.64783 1.23022 0.84047 1.00374 0.95633 0.92366 0.77955 0.89790 0.89762 0.88928 0.91600 0.82204 0.81690 0.91829 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.94 22.91 24.83 -169.99 -4.22 18.69 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.32 -8.09 7.11 56.52 0.40 -7.69 16 6 H -0.27 -6.26 5.19 56.52 0.29 -5.97 16 7 C -0.55 -14.61 8.82 -34.44 -0.30 -14.91 16 8 H 0.08 2.33 7.81 -52.49 -0.41 1.92 16 9 C 0.22 4.83 0.68 -89.94 -0.06 4.77 16 10 O -0.56 -12.07 8.74 -35.23 -0.31 -12.37 16 11 C -0.13 -2.53 5.88 -24.59 -0.14 -2.67 16 12 C 0.10 1.76 5.93 -2.54 -0.02 1.75 16 13 N -0.58 -11.05 3.33 -171.57 -0.57 -11.62 16 14 C 0.57 10.56 7.84 -12.26 -0.10 10.46 16 15 O -0.53 -11.13 15.64 5.33 0.08 -11.05 16 16 C 0.08 1.19 6.72 -82.96 -0.56 0.64 16 17 N -0.42 -5.63 6.57 -6.90 -0.05 -5.67 16 18 C 0.16 1.62 7.27 -17.46 -0.13 1.49 16 19 Cl -0.01 -0.13 29.10 -51.86 -1.51 -1.64 16 20 C -0.11 -0.78 9.88 -39.30 -0.39 -1.16 16 21 C -0.10 -0.81 10.16 -39.24 -0.40 -1.21 16 22 C 0.11 1.38 7.31 -38.83 -0.28 1.10 16 23 F -0.10 -1.39 15.55 2.25 0.04 -1.35 16 24 C 0.09 1.87 6.22 -3.06 -0.02 1.86 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.37 7.08 8.97 45.56 0.41 7.49 16 27 H 0.08 1.69 8.04 -51.93 -0.42 1.27 16 28 H 0.08 1.72 6.23 -51.93 -0.32 1.40 16 29 H 0.09 1.50 5.88 -51.93 -0.31 1.19 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.08 1.71 7.66 -51.93 -0.40 1.32 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -32.18 304.48 -6.04 -38.21 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -2.37 Total: 3.51 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.49 Total: 4.09 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.16 Total: -42.67 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.22 Total: -23.42 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.22 Total: 18.69 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.18 -6.04 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.449 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds