Wall clock time and date at job start Tue Mar 31 2020 10:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47236 * 266.06716 * 3 2 1 5 5 H 1.48501 * 109.47359 * 26.06916 * 3 2 1 6 6 H 1.48508 * 109.47294 * 146.06709 * 3 2 1 7 7 C 1.37883 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 353.92266 * 7 2 1 9 9 C 1.50696 * 120.00227 * 173.92141 * 7 2 1 10 10 O 1.42902 * 110.63635 * 325.51519 * 9 7 2 11 11 C 1.55154 * 110.72414 * 88.65819 * 9 7 2 12 12 C 1.54902 * 101.58114 * 154.04331 * 11 9 7 13 13 N 1.47420 * 104.83646 * 322.98944 * 12 11 9 14 14 C 1.34770 * 125.65203 * 204.09381 * 13 12 11 15 15 O 1.21542 * 119.99974 * 180.02562 * 14 13 12 16 16 C 1.47996 * 120.00036 * 0.02562 * 14 13 12 17 17 N 1.32839 * 119.73932 * 0.02562 * 16 14 13 18 18 C 1.31528 * 121.64591 * 179.97438 * 17 16 14 19 19 Cl 1.73596 * 119.52983 * 179.97438 * 18 17 16 20 20 C 1.38847 * 120.94458 * 0.02562 * 18 17 16 21 21 C 1.38397 * 119.38270 * 359.97438 * 20 18 17 22 22 C 1.38995 * 118.48385 * 359.97438 * 21 20 18 23 23 F 1.35103 * 120.48226 * 180.02562 * 22 21 20 24 24 C 1.47023 * 108.69994 * 24.35658 * 13 12 11 25 25 H 0.96999 * 119.99577 * 0.02562 * 1 2 3 26 26 H 0.96702 * 114.00263 * 297.55082 * 10 9 7 27 27 H 1.09004 * 111.00428 * 35.96628 * 11 9 7 28 28 H 1.09000 * 111.00363 * 272.11749 * 11 9 7 29 29 H 1.09006 * 110.36712 * 204.15102 * 12 11 9 30 30 H 1.08997 * 110.46360 * 81.88267 * 12 11 9 31 31 H 1.07995 * 120.30591 * 179.97438 * 20 18 17 32 32 H 1.08001 * 120.75576 * 179.97438 * 21 20 18 33 33 H 1.09003 * 109.88369 * 118.12988 * 24 13 12 34 34 H 1.08997 * 109.88621 * 239.29653 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5798 1.9984 -1.3968 5 1 1.4076 2.6752 0.6153 6 1 3.5027 1.4655 0.7816 7 6 2.0046 -1.1941 0.0005 8 1 1.4692 -2.1267 0.1000 9 6 3.5052 -1.1978 -0.1377 10 8 3.9346 -0.1388 -0.9956 11 6 4.1849 -1.0878 1.2527 12 6 5.5507 -1.7682 0.9860 13 7 5.2463 -2.8768 0.0631 14 6 5.9833 -3.9943 -0.0924 15 8 5.6355 -4.8460 -0.8867 16 6 7.2162 -4.1844 0.7039 17 7 7.5912 -3.2505 1.5709 18 6 8.6794 -3.3809 2.2981 19 17 9.1184 -2.1257 3.4139 20 6 9.4827 -4.5078 2.1852 21 6 9.1302 -5.5065 1.2942 22 6 7.9747 -5.3436 0.5390 23 9 7.5925 -6.2934 -0.3425 24 6 4.0088 -2.5584 -0.6642 25 1 -0.4849 0.8401 -0.0004 26 1 3.6062 -0.2094 -1.9024 27 1 3.6184 -1.6317 2.0087 28 1 4.3176 -0.0451 1.5413 29 1 5.9709 -2.1529 1.9153 30 1 6.2418 -1.0658 0.5202 31 1 10.3742 -4.6040 2.7870 32 1 9.7391 -6.3922 1.1882 33 1 4.2135 -2.4918 -1.7327 34 1 3.2595 -3.3271 -0.4753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:14 Heat of formation + Delta-G solvation = -98.898941 kcal Electronic energy + Delta-G solvation = -24011.210203 eV Core-core repulsion = 20077.472700 eV Total energy + Delta-G solvation = -3933.737503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.19200 -41.91206 -40.64693 -39.21422 -37.73158 -36.48785 -34.47409 -34.08706 -32.33917 -31.66799 -30.02185 -27.66934 -25.96724 -24.63963 -23.95287 -21.78435 -21.26585 -19.62904 -19.08075 -18.79495 -18.43242 -17.44653 -17.31746 -17.17353 -16.68823 -16.52732 -16.27321 -15.39438 -15.23198 -15.17157 -14.88162 -14.59033 -14.52860 -14.17072 -14.01281 -13.84301 -13.30948 -13.26086 -12.79397 -12.66602 -12.41375 -12.32870 -12.23671 -11.88618 -11.72213 -11.25873 -11.22467 -10.73190 -10.60954 -10.41668 -10.17384 -9.70530 -8.35522 -6.50452 -0.85506 -0.33669 0.56863 1.38762 1.51018 1.53313 1.67200 1.75285 2.31052 2.44422 2.68812 2.80066 2.96785 3.34213 3.40284 3.49629 3.74329 3.83083 4.00880 4.15575 4.32673 4.38976 4.50025 4.58525 4.70695 4.77225 5.00627 5.09991 5.14407 5.20698 5.37242 5.49490 6.02867 6.07641 6.34594 6.55953 6.82319 6.91722 7.27537 8.77682 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.004366 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.613791 B = 6410.959573 C = 7613.356429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.029 3.971 3 Si 1.004 2.996 4 H -0.280 1.280 5 H -0.333 1.333 6 H -0.251 1.251 7 C -0.553 4.553 8 H 0.039 0.961 9 C 0.221 3.779 10 O -0.560 6.560 11 C -0.125 4.125 12 C 0.117 3.883 13 N -0.589 5.589 14 C 0.566 3.434 15 O -0.566 6.566 16 C 0.049 3.951 17 N -0.440 5.440 18 C 0.148 3.852 19 Cl -0.005 7.005 20 C -0.076 4.076 21 C -0.080 4.080 22 C 0.100 3.900 23 F -0.115 7.115 24 C 0.098 3.902 25 H 0.269 0.731 26 H 0.383 0.617 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.209 0.791 32 H 0.211 0.789 33 H 0.067 0.933 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.698 -7.574 7.173 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.171 4.171 3 Si 0.836 3.164 4 H -0.207 1.207 5 H -0.265 1.265 6 H -0.176 1.176 7 C -0.590 4.590 8 H 0.058 0.942 9 C 0.180 3.820 10 O -0.369 6.369 11 C -0.163 4.163 12 C -0.005 4.005 13 N -0.320 5.320 14 C 0.354 3.646 15 O -0.446 6.446 16 C -0.089 4.089 17 N -0.154 5.154 18 C -0.020 4.020 19 Cl 0.024 6.976 20 C -0.097 4.097 21 C -0.105 4.105 22 C 0.077 3.923 23 F -0.094 7.094 24 C -0.024 4.024 25 H 0.077 0.923 26 H 0.232 0.768 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.226 0.774 32 H 0.228 0.772 33 H 0.085 0.915 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 25.163 -7.002 7.401 27.148 hybrid contribution -0.713 -0.170 -0.943 1.194 sum 24.450 -7.172 6.458 26.286 Atomic orbital electron populations 1.70085 1.08622 1.28673 1.49969 1.25865 0.95313 1.03687 0.92277 0.84837 0.76990 0.75824 0.78769 1.20671 1.26532 1.17582 1.21369 0.90849 0.93785 1.53017 0.94238 1.19936 0.91536 0.82132 0.88367 1.86093 1.76243 1.49315 1.25290 1.23124 0.94803 1.01750 0.96615 1.22695 0.96520 0.87056 0.94209 1.48442 1.24449 1.18644 1.40436 1.17800 0.83093 0.81088 0.82655 1.90814 1.71720 1.43482 1.38608 1.20770 0.96990 0.92556 0.98608 1.67157 1.15575 1.28332 1.04351 1.22224 0.92525 0.92501 0.94775 1.98451 1.90418 1.51479 1.57297 1.22499 1.00761 0.89294 0.97106 1.22170 0.93369 1.02200 0.92805 1.18970 0.95719 0.86401 0.91192 1.91615 1.90758 1.61322 1.65665 1.22682 0.84772 0.98884 0.96106 0.92273 0.76756 0.90441 0.89451 0.87146 0.90928 0.77404 0.77221 0.91484 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.96 21.45 0.30 -56.73 16 2 C 0.03 1.61 5.46 84.66 0.46 2.07 16 3 Si 1.00 47.06 24.83 68.60 1.70 48.77 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.33 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.25 -11.04 5.19 99.48 0.52 -10.53 16 7 C -0.55 -30.22 8.82 25.60 0.23 -30.00 16 8 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 9 C 0.22 9.83 0.68 -10.35 -0.01 9.82 16 10 O -0.56 -23.32 8.74 -148.98 -1.30 -24.62 16 11 C -0.12 -4.95 5.88 31.98 0.19 -4.76 16 12 C 0.12 3.99 5.93 86.85 0.51 4.51 16 13 N -0.59 -22.59 3.33 -815.03 -2.71 -25.30 16 14 C 0.57 21.29 7.84 86.83 0.68 21.97 16 15 O -0.57 -24.67 15.64 -3.85 -0.06 -24.73 16 16 C 0.05 1.39 6.72 41.89 0.28 1.68 16 17 N -0.44 -10.97 6.57 -175.75 -1.15 -12.12 16 18 C 0.15 2.52 7.27 84.88 0.62 3.14 16 19 Cl -0.01 -0.08 29.10 -2.72 -0.08 -0.16 16 20 C -0.08 -0.68 9.88 22.45 0.22 -0.46 16 21 C -0.08 -0.85 10.16 22.49 0.23 -0.62 16 22 C 0.10 2.27 7.31 22.76 0.17 2.44 16 23 F -0.12 -3.19 15.55 44.97 0.70 -2.49 16 24 C 0.10 4.18 6.22 86.73 0.54 4.72 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.38 14.17 8.97 -74.06 -0.66 13.50 16 27 H 0.08 3.14 8.04 -2.39 -0.02 3.12 16 28 H 0.09 3.41 6.23 -2.39 -0.01 3.40 16 29 H 0.11 3.42 5.88 -2.38 -0.01 3.41 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.21 -0.07 8.06 -2.91 -0.02 -0.09 16 32 H 0.21 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 34 H 0.05 2.54 7.66 -2.39 -0.02 2.53 16 Total: -1.00 -74.09 304.48 1.84 -72.25 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.32 Total: 10.61 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 4.12 Total: 14.51 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -3.57 Total: -94.15 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.36 Total: -49.35 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.70 Total: -2.49 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.70 Total: 48.77 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -74.09 1.84 -72.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.645 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds