Wall clock time and date at job start Tue Mar 31 2020 10:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48492 * 109.47095 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47221 * 30.00365 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00121 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34770 * 125.65124 * 155.91495 * 13 12 11 15 15 O 1.21540 * 120.00089 * 179.97438 * 14 13 12 16 16 C 1.47990 * 120.00307 * 359.97438 * 14 13 12 17 17 N 1.32854 * 119.73905 * 359.71874 * 16 14 13 18 18 C 1.31523 * 121.64617 * 179.74986 * 17 16 14 19 19 Cl 1.73597 * 119.52712 * 180.27199 * 18 17 16 20 20 C 1.38840 * 120.94314 * 0.53349 * 18 17 16 21 21 C 1.38397 * 119.38703 * 359.73758 * 20 18 17 22 22 C 1.38996 * 118.48327 * 0.02562 * 21 20 18 23 23 F 1.35101 * 120.48223 * 180.02562 * 22 21 20 24 24 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 25 25 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 27 27 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 28 28 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 29 29 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 30 30 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 31 31 H 1.08004 * 120.30503 * 179.71711 * 20 18 17 32 32 H 1.07997 * 120.75413 * 180.02562 * 21 20 18 33 33 H 1.09003 * 109.87825 * 241.63649 * 24 13 12 34 34 H 1.09001 * 109.88209 * 120.47703 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0371 -4.6058 -2.8063 15 8 -0.6967 -3.9111 -3.5543 16 6 0.1452 -6.0446 -3.1011 17 7 0.8719 -6.7980 -2.2830 18 6 1.0542 -8.0812 -2.5062 19 17 2.0084 -9.0154 -1.3969 20 6 0.4990 -8.6983 -3.6191 21 6 -0.2612 -7.9507 -4.5015 22 6 -0.4421 -6.5978 -4.2392 23 9 -1.1771 -5.8302 -5.0733 24 6 0.4282 -2.6578 -1.2974 25 1 -0.4850 0.8400 0.0004 26 1 -0.2247 -1.8680 1.2334 27 1 3.0948 -3.4670 -0.6886 28 1 2.5461 -3.9997 0.9358 29 1 1.9712 -5.5343 -1.2166 30 1 0.7139 -5.2644 0.0276 31 1 0.6592 -9.7518 -3.7948 32 1 -0.7037 -8.4082 -5.3740 33 1 -0.6140 -2.4001 -1.1087 34 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:16 Heat of formation + Delta-G solvation = -103.377548 kcal Electronic energy + Delta-G solvation = -24010.904733 eV Core-core repulsion = 20076.973023 eV Total energy + Delta-G solvation = -3933.931710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.18857 -41.86639 -40.52423 -38.99376 -37.72063 -36.21529 -34.22277 -34.05097 -32.28614 -31.58707 -29.65031 -27.54541 -25.99315 -24.64382 -24.03440 -21.61017 -21.20990 -19.26443 -18.98906 -18.76369 -18.40645 -17.47431 -17.22368 -17.21382 -16.51599 -16.43530 -16.02039 -15.29397 -15.22186 -14.83452 -14.81411 -14.77718 -14.49435 -14.07039 -13.77816 -13.50807 -13.38871 -12.87947 -12.65908 -12.56947 -12.39042 -12.32803 -12.30338 -12.14310 -11.69582 -11.24931 -11.19700 -10.77953 -10.54495 -10.33293 -10.16156 -9.63729 -8.28726 -6.45358 -0.84390 -0.32577 0.57080 1.40770 1.41704 1.42812 1.52837 1.77760 2.32471 2.36716 2.70529 2.83818 2.97762 3.38910 3.40843 3.75754 3.81658 4.06690 4.09816 4.21778 4.40639 4.50997 4.59155 4.64036 4.81152 4.96553 5.10144 5.12739 5.25008 5.32934 5.45344 5.71624 6.00803 6.10032 6.44912 6.62388 6.88510 7.26060 7.33882 8.77651 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.004091 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.407999 B = 6843.372010 C = 7877.591899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.069 0.931 9 C 0.235 3.765 10 O -0.588 6.588 11 C -0.116 4.116 12 C 0.117 3.883 13 N -0.592 5.592 14 C 0.558 3.442 15 O -0.574 6.574 16 C 0.050 3.950 17 N -0.440 5.440 18 C 0.148 3.852 19 Cl -0.003 7.003 20 C -0.076 4.076 21 C -0.079 4.079 22 C 0.098 3.902 23 F -0.117 7.117 24 C 0.118 3.882 25 H 0.271 0.729 26 H 0.377 0.623 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.211 0.789 32 H 0.212 0.788 33 H 0.035 0.965 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 -21.872 -7.232 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.597 4.597 8 H 0.087 0.913 9 C 0.195 3.805 10 O -0.396 6.396 11 C -0.154 4.154 12 C -0.004 4.004 13 N -0.322 5.322 14 C 0.346 3.654 15 O -0.454 6.454 16 C -0.088 4.088 17 N -0.154 5.154 18 C -0.020 4.020 19 Cl 0.026 6.974 20 C -0.096 4.096 21 C -0.104 4.104 22 C 0.075 3.925 23 F -0.095 7.095 24 C -0.005 4.005 25 H 0.081 0.919 26 H 0.227 0.773 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.228 0.772 32 H 0.229 0.771 33 H 0.054 0.946 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.876 -21.580 -6.760 22.796 hybrid contribution -0.715 1.875 -0.643 2.107 sum 2.161 -19.705 -7.403 21.160 Atomic orbital electron populations 1.69752 1.07176 1.28627 1.50128 1.25843 0.95815 1.02896 0.92932 0.85430 0.78834 0.78510 0.78130 1.20439 1.20571 1.18832 1.21842 0.94034 0.91206 1.52589 0.91294 1.19687 0.86580 0.93658 0.80596 1.86086 1.53596 1.52339 1.47602 1.22836 0.97139 0.93869 1.01535 1.22650 0.93033 0.94608 0.90115 1.48689 1.48982 1.11679 1.22814 1.17956 0.80099 0.86581 0.80799 1.90798 1.42584 1.62484 1.49552 1.20769 1.00375 0.93514 0.94137 1.67148 1.13061 1.06569 1.28629 1.22247 0.97119 0.89202 0.93422 1.98445 1.69120 1.67949 1.61892 1.22508 0.93076 1.04148 0.89881 1.22172 0.97417 0.88667 1.02180 1.19010 0.93382 0.91370 0.88745 1.91608 1.73537 1.75504 1.68868 1.22670 0.99731 0.79157 0.98895 0.91922 0.77277 0.89910 0.89138 0.86788 0.91863 0.77186 0.77118 0.94640 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.80 10.97 21.45 0.24 -50.56 16 2 C 0.03 1.38 5.27 84.65 0.45 1.83 16 3 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.56 -30.00 8.12 25.60 0.21 -29.79 16 8 H 0.07 3.59 7.77 -2.91 -0.02 3.57 16 9 C 0.24 11.89 0.86 -10.36 -0.01 11.88 16 10 O -0.59 -30.94 13.09 -148.98 -1.95 -32.89 16 11 C -0.12 -4.78 6.22 31.98 0.20 -4.58 16 12 C 0.12 4.48 5.93 86.86 0.52 4.99 16 13 N -0.59 -26.54 3.33 -815.04 -2.71 -29.25 16 14 C 0.56 24.28 7.83 86.83 0.68 24.96 16 15 O -0.57 -28.87 15.64 -3.84 -0.06 -28.93 16 16 C 0.05 1.62 6.72 41.88 0.28 1.90 16 17 N -0.44 -12.17 6.57 -175.75 -1.15 -13.32 16 18 C 0.15 2.80 7.27 84.88 0.62 3.41 16 19 Cl 0.00 -0.04 29.10 -2.72 -0.08 -0.12 16 20 C -0.08 -0.80 9.88 22.45 0.22 -0.58 16 21 C -0.08 -1.01 10.16 22.49 0.23 -0.78 16 22 C 0.10 2.53 7.31 22.76 0.17 2.70 16 23 F -0.12 -3.66 15.55 44.97 0.70 -2.96 16 24 C 0.12 6.17 5.39 86.72 0.47 6.64 16 25 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.38 20.64 7.17 -74.06 -0.53 20.11 16 27 H 0.08 3.25 8.04 -2.38 -0.02 3.23 16 28 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 29 H 0.11 3.80 5.87 -2.39 -0.01 3.79 16 30 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.21 0.17 8.06 -2.91 -0.02 0.14 16 32 H 0.21 0.78 8.06 -2.91 -0.02 0.75 16 33 H 0.04 2.03 8.01 -2.39 -0.02 2.02 16 34 H 0.04 2.26 7.82 -2.39 -0.02 2.24 16 Total: -1.00 -70.70 311.47 1.67 -69.03 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.64 Total: 21.81 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 4.02 Total: 22.58 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -3.63 Total: -93.13 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: -2.01 Total: -61.82 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.70 Total: -2.96 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -70.70 1.67 -69.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.351 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds