Wall clock time and date at job start Tue Mar 31 2020 10:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35688 * 116.99529 * 2 1 4 4 N 1.32267 * 119.67990 * 0.24701 * 3 2 1 5 5 C 1.31933 * 121.65787 * 180.28608 * 4 3 2 6 6 C 1.38174 * 120.81991 * 359.75228 * 5 4 3 7 7 Br 1.89103 * 120.36410 * 180.02562 * 6 5 4 8 8 C 1.38855 * 119.26853 * 359.97438 * 6 5 4 9 9 C 1.38414 * 118.47784 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.43950 * 180.02562 * 9 8 6 11 11 N 1.46905 * 109.47066 * 260.00216 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46807 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00107 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99714 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99765 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47110 * 90.00207 * 18 16 14 20 20 H 1.48501 * 109.47137 * 210.00199 * 18 16 14 21 21 H 1.48496 * 109.47323 * 330.00240 * 18 16 14 22 22 H 1.09002 * 109.47313 * 299.99470 * 1 2 3 23 23 H 1.09002 * 109.47338 * 59.99901 * 1 2 3 24 24 H 1.09007 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.58986 * 179.73238 * 5 4 3 26 26 H 1.08005 * 120.75747 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.47558 * 140.00380 * 10 9 8 28 28 H 1.08998 * 109.47216 * 20.00042 * 10 9 8 29 29 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 30 30 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 31 31 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 32 32 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 33 33 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 34 34 H 0.97007 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3183 2.3142 0.0050 5 6 1.8762 3.5098 -0.0005 6 6 3.2508 3.6495 -0.0065 7 35 4.0368 5.3694 -0.0134 8 6 4.0487 2.5130 -0.0062 9 6 3.4322 1.2738 0.0006 10 6 4.2554 0.0116 0.0018 11 7 4.3160 -0.5348 -1.3606 12 6 5.1118 -1.7690 -1.3979 13 6 5.1524 -2.3065 -2.8299 14 6 5.9693 -3.5723 -2.8682 15 1 6.4153 -3.9548 -1.9621 16 6 6.1473 -4.2419 -4.0603 17 7 5.6046 -3.7758 -5.1637 18 14 7.1605 -5.8105 -4.1080 19 1 6.2755 -6.9790 -3.8700 20 1 7.8070 -5.9420 -5.4384 21 1 8.2047 -5.7577 -3.0534 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.2506 4.3902 -0.0005 26 1 5.1257 2.5943 -0.0104 27 1 3.7972 -0.7206 0.6667 28 1 5.2641 0.2359 0.3484 29 1 4.6778 0.1489 -2.0085 30 1 6.1266 -1.5573 -1.0608 31 1 4.6591 -2.5131 -0.7428 32 1 4.1378 -2.5180 -3.1673 33 1 5.6054 -1.5621 -3.4846 34 1 5.7302 -4.2467 -6.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865526810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:01 Heat of formation + Delta-G solvation = -6.028563 kcal Electronic energy + Delta-G solvation = -17656.142782 eV Core-core repulsion = 14635.465060 eV Total energy + Delta-G solvation = -3020.677722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91352 -38.01959 -36.23943 -33.54545 -32.85954 -32.05126 -29.66973 -29.02245 -27.24778 -25.83138 -23.64194 -23.08822 -21.64822 -20.54415 -18.50860 -17.51446 -16.34934 -16.07479 -15.66360 -15.26994 -14.51888 -14.39835 -14.22393 -14.08851 -13.56131 -13.46800 -12.92832 -12.47707 -12.15223 -11.97053 -11.79703 -11.49405 -11.04250 -10.91199 -10.83568 -10.68484 -10.56752 -10.03802 -9.93290 -9.84802 -9.37405 -9.14495 -8.47872 -8.34482 -7.82676 -5.98864 -4.01522 0.77140 0.91658 1.34380 3.01536 3.32789 3.38741 3.40870 3.42447 4.02723 4.44005 4.53913 4.56714 4.74842 4.99520 5.15571 5.23757 5.27532 5.37043 5.37716 5.57275 5.63687 5.74964 5.94936 6.09047 6.33170 6.40315 6.97777 7.08541 7.43409 7.54921 7.72682 7.81575 7.94143 8.09053 8.43959 9.05806 9.62192 11.12553 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.002938 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.536163 B = 9528.904332 C =10587.238076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.281 6.281 3 C 0.358 3.642 4 N -0.536 5.536 5 C 0.171 3.829 6 C -0.188 4.188 7 Br -0.040 7.040 8 C -0.012 4.012 9 C -0.140 4.140 10 C 0.110 3.890 11 N -0.682 5.682 12 C 0.067 3.933 13 C 0.026 3.974 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.165 0.835 26 H 0.149 0.851 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.335 0.665 30 H 0.016 0.984 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 19.483 13.440 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.185 6.185 3 C 0.178 3.822 4 N -0.260 5.260 5 C 0.013 3.987 6 C -0.270 4.270 7 Br 0.044 6.956 8 C -0.039 4.039 9 C -0.144 4.144 10 C -0.020 4.020 11 N -0.313 5.313 12 C -0.060 4.060 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.182 0.818 26 H 0.166 0.834 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.152 0.848 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.647 19.339 13.314 25.021 hybrid contribution 1.875 -0.637 -0.091 1.983 sum -6.772 18.703 13.223 23.885 Atomic orbital electron populations 1.22928 0.77296 1.03374 1.02154 1.86431 1.22626 1.23335 1.86147 1.19775 0.88969 0.84729 0.88724 1.67509 1.39979 0.98347 1.20171 1.22374 0.90600 0.94375 0.91399 1.22603 0.96318 0.92508 1.15597 1.96708 1.82584 1.18357 1.97988 1.21342 1.00675 0.89522 0.92352 1.20002 0.91634 0.96283 1.06455 1.20664 0.96048 0.91773 0.93499 1.60607 1.58139 1.07911 1.04640 1.22177 0.92705 0.89278 1.01870 1.19064 0.97721 0.95304 0.89099 1.21173 1.32023 1.08698 0.94136 0.92731 1.25003 0.95944 0.97708 0.95712 1.69975 1.44628 1.39617 0.99014 0.86587 0.80376 0.83700 0.77279 1.20633 1.21239 1.19917 0.92512 0.92135 0.88291 0.81755 0.83375 0.89678 0.94575 0.84767 0.96575 0.92126 0.95605 0.96847 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.28 -4.07 9.73 -18.77 -0.18 -4.25 16 3 C 0.36 5.03 7.47 -17.13 -0.13 4.90 16 4 N -0.54 -6.87 9.21 -13.31 -0.12 -6.99 16 5 C 0.17 1.85 10.94 -17.53 -0.19 1.66 16 6 C -0.19 -2.02 6.24 -39.38 -0.25 -2.27 16 7 Br -0.04 -0.37 33.73 -68.01 -2.29 -2.67 16 8 C -0.01 -0.13 9.58 -39.29 -0.38 -0.51 16 9 C -0.14 -1.87 5.42 -104.32 -0.57 -2.43 16 10 C 0.11 1.60 5.49 -4.97 -0.03 1.57 16 11 N -0.68 -12.25 6.49 -115.05 -0.75 -13.00 16 12 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 13 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 14 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 23 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 24 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 25 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 27 H 0.08 1.27 7.88 -51.93 -0.41 0.86 16 28 H 0.04 0.48 8.03 -51.93 -0.42 0.06 16 29 H 0.34 5.87 8.72 -39.29 -0.34 5.53 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -31.16 317.98 -8.41 -39.57 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.51 Total: -0.52 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.06 Total: -7.29 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.13 Total: -46.32 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.18 Total: -4.25 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.16 -8.41 -39.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865526810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.543 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds