Wall clock time and date at job start Tue Mar 31 2020 10:11:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35688 * 116.99529 * 2 1
4 4 N 1.32267 * 119.67990 * 0.24701 * 3 2 1
5 5 C 1.31933 * 121.65787 * 180.28608 * 4 3 2
6 6 C 1.38174 * 120.81991 * 359.75228 * 5 4 3
7 7 Br 1.89103 * 120.36410 * 180.02562 * 6 5 4
8 8 C 1.38855 * 119.26853 * 359.97438 * 6 5 4
9 9 C 1.38414 * 118.47784 * 359.97438 * 8 6 5
10 10 C 1.50697 * 120.43950 * 180.02562 * 9 8 6
11 11 N 1.46905 * 109.47066 * 260.00216 * 10 9 8
12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9
13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10
14 14 C 1.50703 * 109.46807 * 179.97438 * 13 12 11
15 15 H 1.07995 * 120.00107 * 359.97438 * 14 13 12
16 16 C 1.37878 * 119.99714 * 179.97438 * 14 13 12
17 17 N 1.31510 * 119.99944 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 119.99765 * 179.97438 * 16 14 13
19 19 H 1.48499 * 109.47110 * 90.00207 * 18 16 14
20 20 H 1.48501 * 109.47137 * 210.00199 * 18 16 14
21 21 H 1.48496 * 109.47323 * 330.00240 * 18 16 14
22 22 H 1.09002 * 109.47313 * 299.99470 * 1 2 3
23 23 H 1.09002 * 109.47338 * 59.99901 * 1 2 3
24 24 H 1.09007 * 109.47121 * 179.97438 * 1 2 3
25 25 H 1.08002 * 119.58986 * 179.73238 * 5 4 3
26 26 H 1.08005 * 120.75747 * 180.02562 * 8 6 5
27 27 H 1.09001 * 109.47558 * 140.00380 * 10 9 8
28 28 H 1.08998 * 109.47216 * 20.00042 * 10 9 8
29 29 H 1.00901 * 110.99869 * 56.04737 * 11 10 9
30 30 H 1.09004 * 109.47031 * 299.99620 * 12 11 10
31 31 H 1.08995 * 109.47111 * 59.99900 * 12 11 10
32 32 H 1.08995 * 109.46615 * 299.99641 * 13 12 11
33 33 H 1.08996 * 109.46939 * 60.00272 * 13 12 11
34 34 H 0.97007 * 120.00038 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2090 0.0000
4 7 1.3183 2.3142 0.0050
5 6 1.8762 3.5098 -0.0005
6 6 3.2508 3.6495 -0.0065
7 35 4.0368 5.3694 -0.0134
8 6 4.0487 2.5130 -0.0062
9 6 3.4322 1.2738 0.0006
10 6 4.2554 0.0116 0.0018
11 7 4.3160 -0.5348 -1.3606
12 6 5.1118 -1.7690 -1.3979
13 6 5.1524 -2.3065 -2.8299
14 6 5.9693 -3.5723 -2.8682
15 1 6.4153 -3.9548 -1.9621
16 6 6.1473 -4.2419 -4.0603
17 7 5.6046 -3.7758 -5.1637
18 14 7.1605 -5.8105 -4.1080
19 1 6.2755 -6.9790 -3.8700
20 1 7.8070 -5.9420 -5.4384
21 1 8.2047 -5.7577 -3.0534
22 1 -0.3634 0.5138 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3634 -1.0277 -0.0005
25 1 1.2506 4.3902 -0.0005
26 1 5.1257 2.5943 -0.0104
27 1 3.7972 -0.7206 0.6667
28 1 5.2641 0.2359 0.3484
29 1 4.6778 0.1489 -2.0085
30 1 6.1266 -1.5573 -1.0608
31 1 4.6591 -2.5131 -0.7428
32 1 4.1378 -2.5180 -3.1673
33 1 5.6054 -1.5621 -3.4846
34 1 5.7302 -4.2467 -6.0025
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000865526810.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:11:01
Heat of formation + Delta-G solvation = -28.127178 kcal
Electronic energy + Delta-G solvation = -17657.101050 eV
Core-core repulsion = 14635.465060 eV
Total energy + Delta-G solvation = -3021.635990 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 314.037 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.85862 -38.97995 -37.68239 -35.31020 -34.00452 -33.36274 -31.05589 -30.24752
-28.15042 -27.30484 -25.33418 -24.05502 -22.73145 -22.41214 -19.44916 -18.51624
-18.46400 -17.09158 -16.88374 -16.39719 -16.37368 -15.60372 -15.42375 -15.26639
-14.66045 -14.54762 -14.15641 -14.07105 -13.90338 -13.21155 -12.88603 -12.81082
-12.65470 -12.48542 -12.39035 -11.95604 -11.71894 -11.47812 -11.44435 -11.31085
-10.80166 -10.73418 -10.55389 -9.42970 -9.24641 -8.19109 -6.30660 -0.15443
-0.00138 0.50876 1.41559 1.43223 1.54160 2.10591 2.40785 2.47413
3.13330 3.14487 3.43642 3.70735 3.71599 3.85141 4.15942 4.39073
4.42607 4.43922 4.56616 4.60706 4.67902 4.74431 4.78907 4.93128
5.09037 5.17146 5.45640 5.68222 5.78883 6.11089 6.16237 6.26906
6.51141 6.61306 6.86918 7.38699 8.93106
Molecular weight = 314.04amu
Principal moments of inertia in cm(-1)
A = 0.018831 B = 0.002938 C = 0.002644
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1486.536163 B = 9528.904332 C =10587.238076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.306 6.306
3 C 0.341 3.659
4 N -0.545 5.545
5 C 0.172 3.828
6 C -0.190 4.190
7 Br -0.021 7.021
8 C -0.006 4.006
9 C -0.156 4.156
10 C 0.117 3.883
11 N -0.691 5.691
12 C 0.087 3.913
13 C 0.032 3.968
14 C -0.543 4.543
15 H 0.062 0.938
16 C 0.000 4.000
17 N -0.933 5.933
18 Si 0.967 3.033
19 H -0.273 1.273
20 H -0.282 1.282
21 H -0.261 1.261
22 H 0.067 0.933
23 H 0.056 0.944
24 H 0.114 0.886
25 H 0.192 0.808
26 H 0.166 0.834
27 H 0.079 0.921
28 H 0.055 0.945
29 H 0.337 0.663
30 H 0.025 0.975
31 H 0.059 0.941
32 H -0.009 1.009
33 H -0.009 1.009
34 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.825 20.074 14.525 25.701
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.211 6.211
3 C 0.162 3.838
4 N -0.270 5.270
5 C 0.014 3.986
6 C -0.272 4.272
7 Br 0.063 6.937
8 C -0.033 4.033
9 C -0.160 4.160
10 C -0.012 4.012
11 N -0.322 5.322
12 C -0.042 4.042
13 C -0.005 4.005
14 C -0.582 4.582
15 H 0.081 0.919
16 C -0.198 4.198
17 N -0.573 5.573
18 Si 0.792 3.208
19 H -0.198 1.198
20 H -0.208 1.208
21 H -0.185 1.185
22 H 0.085 0.915
23 H 0.075 0.925
24 H 0.132 0.868
25 H 0.209 0.791
26 H 0.183 0.817
27 H 0.097 0.903
28 H 0.073 0.927
29 H 0.154 0.846
30 H 0.043 0.957
31 H 0.077 0.923
32 H 0.010 0.990
33 H 0.009 0.991
34 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -7.972 19.948 14.421 25.874
hybrid contribution 1.609 -0.674 -0.423 1.795
sum -6.363 19.274 13.998 24.656
Atomic orbital electron populations
1.23087 0.75899 1.04509 1.02444 1.86386 1.24246 1.24097 1.86403
1.19972 0.89410 0.84986 0.89478 1.67540 1.40186 0.98667 1.20566
1.22880 0.91196 0.94529 0.89985 1.22729 0.96405 0.93237 1.14793
1.96737 1.82299 1.16780 1.97906 1.21549 1.01610 0.89022 0.91098
1.19915 0.91405 0.96371 1.08344 1.20597 0.97283 0.92231 0.91134
1.60474 1.57470 1.07285 1.06966 1.21769 0.93706 0.90595 0.98081
1.18913 0.95072 0.94576 0.91981 1.21622 1.32317 1.09612 0.94637
0.91949 1.25988 0.97109 1.01484 0.95229 1.70117 1.46044 1.41381
0.99741 0.85413 0.78814 0.78950 0.77651 1.19828 1.20782 1.18546
0.91464 0.92524 0.86811 0.79095 0.81692 0.90288 0.92671 0.84585
0.95672 0.92289 0.99038 0.99069 0.92788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.76 10.38 113.37 1.18 1.93 16
2 O -0.31 -8.92 9.73 -90.06 -0.88 -9.80 16
3 C 0.34 9.45 7.47 84.78 0.63 10.09 16
4 N -0.55 -13.46 9.21 -308.87 -2.85 -16.30 16
5 C 0.17 3.42 10.94 84.66 0.93 4.34 16
6 C -0.19 -3.70 6.24 22.40 0.14 -3.56 16
7 Br -0.02 -0.35 33.73 -20.37 -0.69 -1.03 16
8 C -0.01 -0.12 9.58 22.46 0.22 0.09 16
9 C -0.16 -4.05 5.42 -19.67 -0.11 -4.16 16
10 C 0.12 3.31 5.49 85.55 0.47 3.78 16
11 N -0.69 -24.86 6.49 -517.92 -3.36 -28.22 16
12 C 0.09 3.66 5.62 86.30 0.49 4.14 16
13 C 0.03 1.73 5.23 29.85 0.16 1.89 16
14 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16
15 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16
16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16
17 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16
18 Si 0.97 44.38 29.54 68.60 2.03 46.41 16
19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16
21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16
22 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16
23 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16
24 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16
25 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16
26 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16
27 H 0.08 2.33 7.88 -2.39 -0.02 2.31 16
28 H 0.06 1.36 8.03 -2.39 -0.02 1.34 16
29 H 0.34 11.85 8.72 -89.69 -0.78 11.07 16
30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16
31 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16
32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16
34 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16
Total: -1.00 -67.05 317.98 -0.34 -67.39
By element:
Atomic # 1 Polarization: 10.40 SS G_CDS: 0.32 Total: 10.73 kcal
Atomic # 6 Polarization: -16.75 SS G_CDS: 4.79 Total: -11.96 kcal
Atomic # 7 Polarization: -95.82 SS G_CDS: -5.92 Total: -101.74 kcal
Atomic # 8 Polarization: -8.92 SS G_CDS: -0.88 Total: -9.80 kcal
Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal
Atomic # 35 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.03 kcal
Total: -67.05 -0.34 -67.39 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865526810.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.267 kcal
(2) G-P(sol) polarization free energy of solvation -67.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.127 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds