Wall clock time and date at job start Tue Mar 31 2020 10:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35688 * 116.99529 * 2 1 4 4 N 1.32267 * 119.67990 * 0.24701 * 3 2 1 5 5 C 1.31933 * 121.65787 * 180.28608 * 4 3 2 6 6 C 1.38174 * 120.81991 * 359.75228 * 5 4 3 7 7 Br 1.89103 * 120.36410 * 180.02562 * 6 5 4 8 8 C 1.38855 * 119.26853 * 359.97438 * 6 5 4 9 9 C 1.38414 * 118.47784 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.43950 * 180.02562 * 9 8 6 11 11 N 1.46905 * 109.47066 * 260.00216 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46807 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00107 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99714 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99765 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47110 * 90.00207 * 18 16 14 20 20 H 1.48501 * 109.47137 * 210.00199 * 18 16 14 21 21 H 1.48496 * 109.47323 * 330.00240 * 18 16 14 22 22 H 1.09002 * 109.47313 * 299.99470 * 1 2 3 23 23 H 1.09002 * 109.47338 * 59.99901 * 1 2 3 24 24 H 1.09007 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.58986 * 179.73238 * 5 4 3 26 26 H 1.08005 * 120.75747 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.47558 * 140.00380 * 10 9 8 28 28 H 1.08998 * 109.47216 * 20.00042 * 10 9 8 29 29 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 30 30 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 31 31 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 32 32 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 33 33 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 34 34 H 0.97007 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3183 2.3142 0.0050 5 6 1.8762 3.5098 -0.0005 6 6 3.2508 3.6495 -0.0065 7 35 4.0368 5.3694 -0.0134 8 6 4.0487 2.5130 -0.0062 9 6 3.4322 1.2738 0.0006 10 6 4.2554 0.0116 0.0018 11 7 4.3160 -0.5348 -1.3606 12 6 5.1118 -1.7690 -1.3979 13 6 5.1524 -2.3065 -2.8299 14 6 5.9693 -3.5723 -2.8682 15 1 6.4153 -3.9548 -1.9621 16 6 6.1473 -4.2419 -4.0603 17 7 5.6046 -3.7758 -5.1637 18 14 7.1605 -5.8105 -4.1080 19 1 6.2755 -6.9790 -3.8700 20 1 7.8070 -5.9420 -5.4384 21 1 8.2047 -5.7577 -3.0534 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.2506 4.3902 -0.0005 26 1 5.1257 2.5943 -0.0104 27 1 3.7972 -0.7206 0.6667 28 1 5.2641 0.2359 0.3484 29 1 4.6778 0.1489 -2.0085 30 1 6.1266 -1.5573 -1.0608 31 1 4.6591 -2.5131 -0.7428 32 1 4.1378 -2.5180 -3.1673 33 1 5.6054 -1.5621 -3.4846 34 1 5.7302 -4.2467 -6.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865526810.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:01 Heat of formation + Delta-G solvation = -28.127178 kcal Electronic energy + Delta-G solvation = -17657.101050 eV Core-core repulsion = 14635.465060 eV Total energy + Delta-G solvation = -3021.635990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85862 -38.97995 -37.68239 -35.31020 -34.00452 -33.36274 -31.05589 -30.24752 -28.15042 -27.30484 -25.33418 -24.05502 -22.73145 -22.41214 -19.44916 -18.51624 -18.46400 -17.09158 -16.88374 -16.39719 -16.37368 -15.60372 -15.42375 -15.26639 -14.66045 -14.54762 -14.15641 -14.07105 -13.90338 -13.21155 -12.88603 -12.81082 -12.65470 -12.48542 -12.39035 -11.95604 -11.71894 -11.47812 -11.44435 -11.31085 -10.80166 -10.73418 -10.55389 -9.42970 -9.24641 -8.19109 -6.30660 -0.15443 -0.00138 0.50876 1.41559 1.43223 1.54160 2.10591 2.40785 2.47413 3.13330 3.14487 3.43642 3.70735 3.71599 3.85141 4.15942 4.39073 4.42607 4.43922 4.56616 4.60706 4.67902 4.74431 4.78907 4.93128 5.09037 5.17146 5.45640 5.68222 5.78883 6.11089 6.16237 6.26906 6.51141 6.61306 6.86918 7.38699 8.93106 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.002938 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.536163 B = 9528.904332 C =10587.238076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.306 6.306 3 C 0.341 3.659 4 N -0.545 5.545 5 C 0.172 3.828 6 C -0.190 4.190 7 Br -0.021 7.021 8 C -0.006 4.006 9 C -0.156 4.156 10 C 0.117 3.883 11 N -0.691 5.691 12 C 0.087 3.913 13 C 0.032 3.968 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.261 1.261 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.114 0.886 25 H 0.192 0.808 26 H 0.166 0.834 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.337 0.663 30 H 0.025 0.975 31 H 0.059 0.941 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 20.074 14.525 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.211 6.211 3 C 0.162 3.838 4 N -0.270 5.270 5 C 0.014 3.986 6 C -0.272 4.272 7 Br 0.063 6.937 8 C -0.033 4.033 9 C -0.160 4.160 10 C -0.012 4.012 11 N -0.322 5.322 12 C -0.042 4.042 13 C -0.005 4.005 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.132 0.868 25 H 0.209 0.791 26 H 0.183 0.817 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.972 19.948 14.421 25.874 hybrid contribution 1.609 -0.674 -0.423 1.795 sum -6.363 19.274 13.998 24.656 Atomic orbital electron populations 1.23087 0.75899 1.04509 1.02444 1.86386 1.24246 1.24097 1.86403 1.19972 0.89410 0.84986 0.89478 1.67540 1.40186 0.98667 1.20566 1.22880 0.91196 0.94529 0.89985 1.22729 0.96405 0.93237 1.14793 1.96737 1.82299 1.16780 1.97906 1.21549 1.01610 0.89022 0.91098 1.19915 0.91405 0.96371 1.08344 1.20597 0.97283 0.92231 0.91134 1.60474 1.57470 1.07285 1.06966 1.21769 0.93706 0.90595 0.98081 1.18913 0.95072 0.94576 0.91981 1.21622 1.32317 1.09612 0.94637 0.91949 1.25988 0.97109 1.01484 0.95229 1.70117 1.46044 1.41381 0.99741 0.85413 0.78814 0.78950 0.77651 1.19828 1.20782 1.18546 0.91464 0.92524 0.86811 0.79095 0.81692 0.90288 0.92671 0.84585 0.95672 0.92289 0.99038 0.99069 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.38 113.37 1.18 1.93 16 2 O -0.31 -8.92 9.73 -90.06 -0.88 -9.80 16 3 C 0.34 9.45 7.47 84.78 0.63 10.09 16 4 N -0.55 -13.46 9.21 -308.87 -2.85 -16.30 16 5 C 0.17 3.42 10.94 84.66 0.93 4.34 16 6 C -0.19 -3.70 6.24 22.40 0.14 -3.56 16 7 Br -0.02 -0.35 33.73 -20.37 -0.69 -1.03 16 8 C -0.01 -0.12 9.58 22.46 0.22 0.09 16 9 C -0.16 -4.05 5.42 -19.67 -0.11 -4.16 16 10 C 0.12 3.31 5.49 85.55 0.47 3.78 16 11 N -0.69 -24.86 6.49 -517.92 -3.36 -28.22 16 12 C 0.09 3.66 5.62 86.30 0.49 4.14 16 13 C 0.03 1.73 5.23 29.85 0.16 1.89 16 14 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 18 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 23 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 24 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 27 H 0.08 2.33 7.88 -2.39 -0.02 2.31 16 28 H 0.06 1.36 8.03 -2.39 -0.02 1.34 16 29 H 0.34 11.85 8.72 -89.69 -0.78 11.07 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -67.05 317.98 -0.34 -67.39 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.32 Total: 10.73 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 4.79 Total: -11.96 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -5.92 Total: -101.74 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.88 Total: -9.80 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.03 kcal Total: -67.05 -0.34 -67.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865526810.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.267 kcal (2) G-P(sol) polarization free energy of solvation -67.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds