Wall clock time and date at job start Tue Mar 31 2020 11:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00301 * 2 1 4 4 H 1.48497 * 109.47159 * 270.00329 * 3 2 1 5 5 H 1.48507 * 109.46880 * 29.99938 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99943 * 3 2 1 7 7 C 1.37877 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00155 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00232 * 180.02562 * 7 2 1 10 10 O 1.42905 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00271 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47097 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46919 * 65.00298 * 12 11 10 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38283 * 119.94004 * 269.72633 * 17 16 14 19 19 C 1.38152 * 120.07792 * 179.72396 * 18 17 16 20 20 C 1.38712 * 119.95539 * 0.54884 * 19 18 17 21 21 O 1.35922 * 120.05692 * 179.70611 * 20 19 18 22 22 C 1.38812 * 119.87878 * 359.72432 * 20 19 18 23 23 Cl 1.73597 * 120.03596 * 179.97438 * 22 20 19 24 24 C 1.38249 * 119.94505 * 89.99869 * 17 16 14 25 25 H 0.97001 * 119.99543 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47592 * 59.99619 * 9 7 2 27 27 H 1.09008 * 109.46488 * 299.99580 * 9 7 2 28 28 H 1.09001 * 109.47437 * 59.99320 * 11 10 9 29 29 H 1.09002 * 109.46840 * 299.99472 * 11 10 9 30 30 H 1.08998 * 109.47242 * 304.99727 * 12 11 10 31 31 H 1.09004 * 109.46797 * 184.99544 * 12 11 10 32 32 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 33 33 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 34 34 H 1.08003 * 119.95730 * 359.97438 * 18 17 16 35 35 H 1.08002 * 120.02242 * 180.27071 * 19 18 17 36 36 H 0.96709 * 113.99716 * 270.01531 * 21 20 19 37 37 H 1.07998 * 119.97383 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 3.9879 -2.5415 0.0010 11 6 5.4124 -2.6543 0.0009 12 6 5.8068 -4.1326 0.0015 13 8 5.3725 -4.7498 -1.2390 14 6 5.6433 -6.0548 -1.3978 15 8 6.2244 -6.6613 -0.5291 16 6 5.2286 -6.7622 -2.6621 17 6 5.6531 -8.2064 -2.5923 18 6 6.8950 -8.5845 -3.0687 19 6 7.2893 -9.9068 -3.0008 20 6 6.4339 -10.8581 -2.4645 21 8 6.8175 -12.1606 -2.4022 22 6 5.1855 -10.4774 -1.9920 23 17 4.1115 -11.6645 -1.3206 24 6 4.7981 -9.1518 -2.0571 25 1 -0.4849 0.8401 -0.0004 26 1 3.8746 -0.6801 0.8910 27 1 3.8751 -0.6805 -0.8890 28 1 5.8152 -2.1708 0.8909 29 1 5.8151 -2.1708 -0.8891 30 1 5.3311 -4.6353 0.8435 31 1 6.8897 -4.2196 0.0909 32 1 4.1454 -6.7067 -2.7709 33 1 5.7046 -6.2846 -3.5185 34 1 7.5590 -7.8446 -3.4906 35 1 8.2612 -10.2005 -3.3692 36 1 6.5826 -12.6776 -3.1850 37 1 3.8272 -8.8546 -1.6894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869734422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:23 Heat of formation + Delta-G solvation = -158.050889 kcal Electronic energy + Delta-G solvation = -22378.859216 eV Core-core repulsion = 18533.724246 eV Total energy + Delta-G solvation = -3845.134970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73607 -39.93763 -37.60938 -37.07475 -36.76729 -36.07554 -32.76184 -32.54596 -31.22792 -30.37333 -27.93623 -27.30865 -23.36936 -23.17128 -22.10091 -21.87302 -20.77307 -18.93229 -17.78695 -17.08825 -16.89885 -16.70710 -16.31002 -15.96063 -15.83088 -15.41180 -14.89173 -14.43436 -14.39069 -14.21929 -13.54249 -13.44709 -13.11537 -12.76463 -12.59507 -12.52191 -12.31443 -12.01877 -11.78755 -11.67841 -11.40456 -11.19639 -10.91565 -10.90502 -10.71124 -10.52729 -10.44549 -9.90326 -9.27049 -9.23912 -8.94970 -8.90315 -8.54032 -6.14880 -4.14372 0.61115 0.79554 1.79535 2.19485 2.62654 3.19735 3.21816 3.28976 3.29613 3.67800 4.17989 4.31868 4.35677 4.43757 4.74095 4.76048 4.78604 4.98456 5.10868 5.14867 5.16174 5.29171 5.34658 5.43636 5.62886 5.65685 5.75563 5.78017 5.92402 6.01764 6.22998 6.51470 6.52138 6.93278 7.14786 7.54176 7.76146 7.92301 8.60116 8.96296 9.43723 10.98078 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.024374 B = 0.002208 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.475141 B =12675.587335 C =13363.730717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.376 6.376 11 C 0.057 3.943 12 C 0.075 3.925 13 O -0.341 6.341 14 C 0.461 3.539 15 O -0.507 6.507 16 C -0.076 4.076 17 C -0.069 4.069 18 C -0.082 4.082 19 C -0.132 4.132 20 C 0.117 3.883 21 O -0.487 6.487 22 C -0.061 4.061 23 Cl -0.057 7.057 24 C -0.078 4.078 25 H 0.267 0.733 26 H 0.004 0.996 27 H 0.001 0.999 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.392 0.608 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.741 -20.409 -9.270 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C 0.001 3.999 13 O -0.257 6.257 14 C 0.303 3.697 15 O -0.396 6.396 16 C -0.113 4.113 17 C -0.069 4.069 18 C -0.101 4.101 19 C -0.151 4.151 20 C 0.071 3.929 21 O -0.298 6.298 22 C -0.088 4.088 23 Cl -0.028 7.028 24 C -0.097 4.097 25 H 0.077 0.923 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.248 0.752 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.739 -20.539 -8.365 27.195 hybrid contribution 0.331 0.918 -0.170 0.991 sum 16.071 -19.621 -8.535 26.760 Atomic orbital electron populations 1.69875 1.06058 1.27134 1.50176 1.24774 0.94827 0.98771 0.94620 0.86841 0.80311 0.83733 0.78788 1.19882 1.20747 1.19130 1.20871 0.88177 0.95373 1.51375 0.89923 1.20638 0.96336 0.79229 0.94476 1.87976 1.16630 1.29784 1.95085 1.22402 0.86154 0.92836 1.00643 1.23186 0.99114 0.93133 0.84448 1.86587 1.73576 1.23981 1.41517 1.23421 0.76295 0.81152 0.88782 1.90690 1.38538 1.66957 1.43389 1.20294 1.05365 0.90639 0.95036 1.19263 0.94584 0.93719 0.99371 1.21015 0.95110 0.95813 0.98117 1.21327 1.00279 0.92827 1.00657 1.18196 0.90696 0.85249 0.98769 1.84866 1.81442 1.18145 1.45300 1.21327 0.92026 0.91443 1.04051 1.98381 1.63732 1.56899 1.83765 1.20907 1.00766 0.90238 0.97773 0.92314 0.97832 0.98160 0.91801 0.93020 0.90291 0.90288 0.85958 0.86187 0.84766 0.84284 0.75173 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -15.33 9.99 -34.44 -0.34 -15.68 16 8 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.17 4.20 4.76 36.00 0.17 4.37 16 10 O -0.38 -8.60 10.30 -38.81 -0.40 -9.00 16 11 C 0.06 0.96 6.33 37.15 0.24 1.19 16 12 C 0.07 1.10 5.84 37.15 0.22 1.32 16 13 O -0.34 -5.20 10.19 -42.02 -0.43 -5.63 16 14 C 0.46 6.13 7.95 36.00 0.29 6.42 16 15 O -0.51 -8.00 15.78 -18.76 -0.30 -8.30 16 16 C -0.08 -0.69 5.94 -29.04 -0.17 -0.86 16 17 C -0.07 -0.65 4.38 -104.60 -0.46 -1.11 16 18 C -0.08 -0.68 9.69 -39.60 -0.38 -1.06 16 19 C -0.13 -1.06 9.99 -39.44 -0.39 -1.46 16 20 C 0.12 1.08 6.70 -39.19 -0.26 0.81 16 21 O -0.49 -3.91 12.96 -19.50 -0.25 -4.17 16 22 C -0.06 -0.63 6.33 -39.36 -0.25 -0.88 16 23 Cl -0.06 -0.57 28.50 -51.86 -1.48 -2.05 16 24 C -0.08 -0.79 9.48 -39.57 -0.38 -1.17 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 27 H 0.00 0.02 7.57 -51.92 -0.39 -0.38 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 31 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16 32 H 0.12 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.12 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.39 1.28 9.06 45.56 0.41 1.69 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -35.80 345.85 -7.11 -42.90 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -3.74 Total: -2.67 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.83 Total: -6.09 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.58 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.38 Total: -27.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.80 -7.11 -42.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869734422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.149 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds