Wall clock time and date at job start Tue Mar 31 2020 10:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00340 * 2 1 4 4 C 1.52997 * 109.47039 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47337 * 60.70908 * 4 3 2 6 6 C 1.36929 * 119.99933 * 266.81724 * 5 4 3 7 7 H 1.08005 * 119.99780 * 328.95323 * 6 5 4 8 8 C 1.38816 * 120.00106 * 148.95884 * 6 5 4 9 9 N 1.31616 * 120.00116 * 157.75189 * 8 6 5 10 10 Si 1.86795 * 119.99446 * 337.75441 * 8 6 5 11 11 H 1.48501 * 109.47148 * 95.94483 * 10 8 6 12 12 H 1.48501 * 109.46819 * 215.93784 * 10 8 6 13 13 H 1.48493 * 109.47751 * 335.93805 * 10 8 6 14 14 C 1.46493 * 119.99713 * 86.81979 * 5 4 3 15 15 C 1.50702 * 109.47449 * 98.16273 * 14 5 4 16 16 C 1.38623 * 120.42143 * 92.31186 * 15 14 5 17 17 C 1.38663 * 118.43478 * 180.02562 * 16 15 14 18 18 C 1.38204 * 119.17761 * 359.97438 * 17 16 15 19 19 N 1.31866 * 120.77881 * 0.02562 * 18 17 16 20 20 C 1.31953 * 121.71403 * 359.97438 * 19 18 17 21 21 Br 1.89093 * 119.62949 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47306 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47452 * 300.00341 * 1 2 3 24 24 H 1.09004 * 109.47465 * 59.99839 * 1 2 3 25 25 H 1.08997 * 109.46698 * 59.99637 * 3 2 1 26 26 H 1.08998 * 109.46588 * 300.00364 * 3 2 1 27 27 H 1.09002 * 109.46928 * 300.70438 * 4 3 2 28 28 H 1.09002 * 109.46564 * 180.71348 * 4 3 2 29 29 H 0.97002 * 120.00082 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.47601 * 338.16392 * 14 5 4 31 31 H 1.09001 * 109.46968 * 218.16365 * 14 5 4 32 32 H 1.08004 * 120.78338 * 0.03978 * 16 15 14 33 33 H 1.07999 * 120.41098 * 180.02562 * 17 16 15 34 34 H 1.08008 * 119.60492 * 180.27811 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9684 0.4726 -1.2055 6 6 4.1521 -0.8839 -1.1704 7 1 4.4739 -1.3617 -0.2568 8 6 3.9248 -1.6449 -2.3089 9 7 4.4921 -2.8257 -2.4353 10 14 2.8138 -0.9927 -3.6616 11 1 3.6405 -0.3472 -4.7129 12 1 2.0460 -2.1162 -4.2561 13 1 1.8718 0.0035 -3.0913 14 6 4.2048 1.2119 -2.4480 15 6 5.6794 1.4849 -2.5973 16 6 6.4891 0.6037 -3.2970 17 6 7.8401 0.8951 -3.4085 18 6 8.3317 2.0464 -2.8230 19 7 7.5325 2.8627 -2.1644 20 6 6.2421 2.6177 -2.0379 21 35 5.1502 3.8284 -1.0799 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8565 0.6326 0.8827 28 1 3.9788 2.1803 0.0122 29 1 4.3330 -3.3576 -3.2308 30 1 3.6617 2.1565 -2.4177 31 1 3.8574 0.6199 -3.2947 32 1 6.0772 -0.2885 -3.7450 33 1 8.5000 0.2309 -3.9470 34 1 9.3821 2.2824 -2.9095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877578240.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:32 Heat of formation + Delta-G solvation = 34.308086 kcal Electronic energy + Delta-G solvation = -19175.175949 eV Core-core repulsion = 16156.247355 eV Total energy + Delta-G solvation = -3018.928594 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84425 -37.45643 -35.86908 -32.40918 -32.31123 -31.62113 -29.85843 -28.62536 -26.07822 -25.80793 -23.47615 -22.82009 -22.03403 -20.18086 -17.11836 -16.42445 -16.35406 -15.87613 -15.34929 -15.27968 -14.59007 -14.40763 -14.14766 -13.47008 -13.26045 -12.75753 -12.67082 -12.47703 -12.23871 -11.74086 -11.44370 -11.19828 -10.95941 -10.71150 -10.54463 -10.42219 -10.01472 -9.71836 -9.42414 -9.25655 -9.19471 -8.99577 -8.53866 -8.38084 -7.01649 -5.97719 -3.31371 1.28647 1.64801 1.70622 3.23651 3.45814 3.51101 4.01461 4.48893 4.50938 4.81047 5.03117 5.18721 5.32209 5.37668 5.42646 5.61511 5.64533 5.72251 5.84820 5.91454 5.94844 6.04977 6.06640 6.15054 6.34189 6.35840 6.51994 6.72553 6.75603 6.94442 7.82667 8.01095 8.04305 8.33696 8.92996 9.69860 10.02956 11.18041 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.008604 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.245735 B = 3253.388802 C = 4721.566803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.042 3.958 4 C 0.134 3.866 5 N -0.582 5.582 6 C -0.237 4.237 7 H 0.085 0.915 8 C 0.034 3.966 9 N -0.901 5.901 10 Si 0.871 3.129 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.166 3.834 15 C -0.093 4.093 16 C -0.044 4.044 17 C -0.157 4.157 18 C 0.085 3.915 19 N -0.469 5.469 20 C 0.121 3.879 21 Br -0.022 7.022 22 H 0.078 0.922 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 12.101 0.269 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C -0.038 4.038 4 C 0.008 3.992 5 N -0.302 5.302 6 C -0.365 4.365 7 H 0.102 0.898 8 C -0.166 4.166 9 N -0.543 5.543 10 Si 0.704 3.296 11 H -0.219 1.219 12 H -0.233 1.233 13 H -0.193 1.193 14 C 0.039 3.961 15 C -0.100 4.100 16 C -0.072 4.072 17 C -0.177 4.177 18 C -0.075 4.075 19 N -0.179 5.179 20 C -0.096 4.096 21 Br 0.062 6.938 22 H 0.097 0.903 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.738 12.968 0.965 13.025 hybrid contribution -0.980 -0.664 -1.431 1.857 sum -0.242 12.304 -0.466 12.315 Atomic orbital electron populations 1.22652 0.83668 1.01890 0.98500 1.88198 1.17106 1.27059 1.94863 1.23332 0.97797 0.84854 0.97782 1.21455 0.89663 0.97383 0.90720 1.44027 1.75572 1.04424 1.06131 1.18790 1.38412 0.80055 0.99289 0.89759 1.25191 0.98179 0.95229 0.97955 1.69857 1.42792 1.12986 1.28685 0.87062 0.83167 0.77546 0.81822 1.21906 1.23275 1.19307 1.20304 0.87886 0.96400 0.91476 1.21681 1.01485 0.92109 0.94765 1.21630 0.92878 0.97885 0.94809 1.22220 0.96385 0.98359 1.00783 1.22524 0.99033 0.91174 0.94732 1.67244 1.03303 1.31873 1.15501 1.22365 0.92061 0.94395 1.00755 1.96550 1.64057 1.59826 1.73327 0.90345 0.95296 0.95224 0.94998 0.94732 0.91953 0.91019 0.92858 0.91604 0.92695 0.83835 0.84644 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.43 10.15 -35.23 -0.36 -7.79 16 3 C 0.04 0.77 6.31 37.16 0.23 1.00 16 4 C 0.13 2.65 6.07 -4.04 -0.02 2.63 16 5 N -0.58 -13.35 2.14 -174.61 -0.37 -13.73 16 6 C -0.24 -6.37 9.44 -15.06 -0.14 -6.51 16 7 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 8 C 0.03 0.93 5.35 -17.43 -0.09 0.83 16 9 N -0.90 -26.40 13.97 55.49 0.78 -25.62 16 10 Si 0.87 21.74 24.74 -169.99 -4.21 17.54 16 11 H -0.29 -6.86 6.79 56.52 0.38 -6.48 16 12 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 13 H -0.27 -6.63 7.07 56.52 0.40 -6.23 16 14 C 0.17 3.53 4.44 -5.20 -0.02 3.51 16 15 C -0.09 -1.86 5.41 -104.45 -0.56 -2.42 16 16 C -0.04 -0.86 9.85 -39.28 -0.39 -1.25 16 17 C -0.16 -2.49 10.11 -39.44 -0.40 -2.89 16 18 C 0.08 1.30 11.18 -17.55 -0.20 1.10 16 19 N -0.47 -8.35 10.32 -11.65 -0.12 -8.47 16 20 C 0.12 2.25 7.16 -17.47 -0.13 2.13 16 21 Br -0.02 -0.35 28.91 -68.01 -1.97 -2.32 16 22 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 28 H 0.07 1.27 4.50 -51.93 -0.23 1.03 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.07 1.27 6.64 -51.93 -0.34 0.93 16 31 H 0.06 1.27 2.09 -51.93 -0.11 1.17 16 32 H 0.14 3.00 8.06 -52.48 -0.42 2.58 16 33 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 300.04 15.07 4.52 4.52 Total: -1.00 -30.55 300.04 -6.40 -36.95 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.06 Total: -0.82 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.61 Total: -0.27 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.28 Total: -47.82 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.36 Total: -7.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.21 Total: 17.54 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -1.97 Total: -2.32 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.55 -6.40 -36.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877578240.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.256 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds