Wall clock time and date at job start Tue Mar 31 2020 10:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00340 * 2 1 4 4 C 1.52997 * 109.47039 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47337 * 60.70908 * 4 3 2 6 6 C 1.36929 * 119.99933 * 266.81724 * 5 4 3 7 7 H 1.08005 * 119.99780 * 328.95323 * 6 5 4 8 8 C 1.38816 * 120.00106 * 148.95884 * 6 5 4 9 9 N 1.31616 * 120.00116 * 157.75189 * 8 6 5 10 10 Si 1.86795 * 119.99446 * 337.75441 * 8 6 5 11 11 H 1.48501 * 109.47148 * 95.94483 * 10 8 6 12 12 H 1.48501 * 109.46819 * 215.93784 * 10 8 6 13 13 H 1.48493 * 109.47751 * 335.93805 * 10 8 6 14 14 C 1.46493 * 119.99713 * 86.81979 * 5 4 3 15 15 C 1.50702 * 109.47449 * 98.16273 * 14 5 4 16 16 C 1.38623 * 120.42143 * 92.31186 * 15 14 5 17 17 C 1.38663 * 118.43478 * 180.02562 * 16 15 14 18 18 C 1.38204 * 119.17761 * 359.97438 * 17 16 15 19 19 N 1.31866 * 120.77881 * 0.02562 * 18 17 16 20 20 C 1.31953 * 121.71403 * 359.97438 * 19 18 17 21 21 Br 1.89093 * 119.62949 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47306 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47452 * 300.00341 * 1 2 3 24 24 H 1.09004 * 109.47465 * 59.99839 * 1 2 3 25 25 H 1.08997 * 109.46698 * 59.99637 * 3 2 1 26 26 H 1.08998 * 109.46588 * 300.00364 * 3 2 1 27 27 H 1.09002 * 109.46928 * 300.70438 * 4 3 2 28 28 H 1.09002 * 109.46564 * 180.71348 * 4 3 2 29 29 H 0.97002 * 120.00082 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.47601 * 338.16392 * 14 5 4 31 31 H 1.09001 * 109.46968 * 218.16365 * 14 5 4 32 32 H 1.08004 * 120.78338 * 0.03978 * 16 15 14 33 33 H 1.07999 * 120.41098 * 180.02562 * 17 16 15 34 34 H 1.08008 * 119.60492 * 180.27811 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9684 0.4726 -1.2055 6 6 4.1521 -0.8839 -1.1704 7 1 4.4739 -1.3617 -0.2568 8 6 3.9248 -1.6449 -2.3089 9 7 4.4921 -2.8257 -2.4353 10 14 2.8138 -0.9927 -3.6616 11 1 3.6405 -0.3472 -4.7129 12 1 2.0460 -2.1162 -4.2561 13 1 1.8718 0.0035 -3.0913 14 6 4.2048 1.2119 -2.4480 15 6 5.6794 1.4849 -2.5973 16 6 6.4891 0.6037 -3.2970 17 6 7.8401 0.8951 -3.4085 18 6 8.3317 2.0464 -2.8230 19 7 7.5325 2.8627 -2.1644 20 6 6.2421 2.6177 -2.0379 21 35 5.1502 3.8284 -1.0799 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8565 0.6326 0.8827 28 1 3.9788 2.1803 0.0122 29 1 4.3330 -3.3576 -3.2308 30 1 3.6617 2.1565 -2.4177 31 1 3.8574 0.6199 -3.2947 32 1 6.0772 -0.2885 -3.7450 33 1 8.5000 0.2309 -3.9470 34 1 9.3821 2.2824 -2.9095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877578240.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:32 Heat of formation + Delta-G solvation = 13.903393 kcal Electronic energy + Delta-G solvation = -19176.060762 eV Core-core repulsion = 16156.247355 eV Total energy + Delta-G solvation = -3019.813408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23508 -38.98951 -37.51220 -34.04363 -33.80406 -33.35235 -31.27968 -30.17132 -27.74487 -27.20905 -25.20114 -24.26500 -23.46077 -21.87501 -18.97385 -17.92664 -17.81946 -17.36442 -16.99159 -16.83928 -16.09193 -15.91719 -15.59258 -15.04457 -14.70152 -14.50448 -14.37043 -14.12036 -13.76800 -13.32596 -12.86565 -12.78125 -12.59847 -12.34360 -12.17106 -12.03569 -11.67692 -11.49761 -11.00302 -10.72419 -10.62685 -10.51726 -10.39273 -9.77573 -8.89243 -8.10475 -5.41245 -0.07475 0.23808 0.34196 1.24387 1.41613 1.50575 2.44238 2.63690 3.06578 3.25647 3.40909 3.54589 3.75444 3.94641 4.04278 4.29180 4.35678 4.38822 4.41523 4.52230 4.56059 4.60518 4.67393 4.74466 4.79559 4.87364 5.10655 5.17743 5.30587 5.59568 5.93444 6.20135 6.52026 6.70810 6.98138 7.66504 8.03462 9.09820 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.008604 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.245735 B = 3253.388802 C = 4721.566803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.043 3.957 4 C 0.131 3.869 5 N -0.592 5.592 6 C -0.218 4.218 7 H 0.043 0.957 8 C -0.009 4.009 9 N -0.947 5.947 10 Si 0.925 3.075 11 H -0.275 1.275 12 H -0.319 1.319 13 H -0.263 1.263 14 C 0.168 3.832 15 C -0.114 4.114 16 C -0.068 4.068 17 C -0.147 4.147 18 C 0.097 3.903 19 N -0.479 5.479 20 C 0.111 3.889 21 Br -0.001 7.001 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.259 0.741 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.120 0.880 33 H 0.170 0.830 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 14.503 0.038 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.036 4.036 4 C 0.005 3.995 5 N -0.313 5.313 6 C -0.348 4.348 7 H 0.061 0.939 8 C -0.204 4.204 9 N -0.593 5.593 10 Si 0.758 3.242 11 H -0.203 1.203 12 H -0.248 1.248 13 H -0.188 1.188 14 C 0.042 3.958 15 C -0.122 4.122 16 C -0.096 4.096 17 C -0.167 4.167 18 C -0.062 4.062 19 N -0.190 5.190 20 C -0.105 4.105 21 Br 0.083 6.917 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.138 0.862 33 H 0.187 0.813 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.253 15.434 0.740 15.502 hybrid contribution -1.034 -1.322 -1.289 2.116 sum 0.220 14.112 -0.549 14.125 Atomic orbital electron populations 1.22826 0.81450 1.02709 1.00132 1.88130 1.19750 1.28631 1.95233 1.23302 0.96321 0.84436 0.99529 1.21593 0.91240 0.97752 0.88898 1.44041 1.76542 1.03246 1.07463 1.18485 1.36744 0.82083 0.97484 0.93938 1.25547 0.99405 0.95450 1.00022 1.69962 1.45016 1.14684 1.29657 0.86172 0.81475 0.76461 0.80127 1.20283 1.24849 1.18843 1.20237 0.89324 0.96440 0.89805 1.21539 1.00572 0.93516 0.96535 1.21653 0.94817 0.97377 0.95765 1.22574 0.95138 0.98923 1.00072 1.23318 1.00694 0.89895 0.92323 1.67386 1.02979 1.32516 1.16085 1.22509 0.92776 0.94480 1.00737 1.96536 1.63625 1.58692 1.72802 0.90111 0.92393 0.94700 0.91569 0.94396 0.93445 0.88884 0.93162 0.89693 0.94528 0.86195 0.81253 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.40 10.15 -148.98 -1.51 -17.91 16 3 C 0.04 1.50 6.31 71.98 0.45 1.95 16 4 C 0.13 5.07 6.07 86.38 0.52 5.59 16 5 N -0.59 -27.22 2.14 -706.35 -1.51 -28.74 16 6 C -0.22 -12.10 9.44 84.04 0.79 -11.31 16 7 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 8 C -0.01 -0.51 5.35 84.86 0.45 -0.05 16 9 N -0.95 -57.68 13.97 21.65 0.30 -57.38 16 10 Si 0.93 45.96 24.74 68.60 1.70 47.66 16 11 H -0.27 -12.75 6.79 99.48 0.68 -12.07 16 12 H -0.32 -16.41 7.11 99.48 0.71 -15.70 16 13 H -0.26 -12.71 7.07 99.48 0.70 -12.01 16 14 C 0.17 7.04 4.44 85.63 0.38 7.42 16 15 C -0.11 -4.48 5.41 -19.76 -0.11 -4.59 16 16 C -0.07 -2.61 9.85 22.46 0.22 -2.39 16 17 C -0.15 -4.28 10.11 22.36 0.23 -4.06 16 18 C 0.10 2.61 11.18 84.68 0.95 3.56 16 19 N -0.48 -15.68 10.32 -190.76 -1.97 -17.65 16 20 C 0.11 3.93 7.16 84.69 0.61 4.53 16 21 Br 0.00 -0.03 28.91 -20.37 -0.59 -0.62 16 22 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.96 8.01 -2.39 -0.02 1.94 16 28 H 0.09 3.14 4.50 -2.39 -0.01 3.13 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.08 3.15 6.64 -2.38 -0.02 3.14 16 31 H 0.04 1.69 2.09 -2.39 0.00 1.68 16 32 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 33 H 0.17 3.69 8.06 -2.91 -0.02 3.66 16 34 H 0.20 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -67.97 300.04 3.24 -64.73 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.07 Total: 7.22 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 5.75 Total: 2.68 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -3.18 Total: -103.76 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.51 Total: -17.91 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.70 Total: 47.66 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.59 Total: -0.62 kcal Total: -67.97 3.24 -64.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877578240.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.636 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds