Wall clock time and date at job start Tue Mar 31 2020 11:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47007 * 270.00065 * 3 2 1 5 5 H 1.48495 * 109.47367 * 29.99936 * 3 2 1 6 6 H 1.48500 * 109.47361 * 149.99980 * 3 2 1 7 7 C 1.37883 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99526 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00199 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.53881 * 299.90513 * 9 7 2 11 11 C 1.53123 * 109.50296 * 60.00045 * 9 7 2 12 12 C 1.53120 * 109.21163 * 177.56339 * 11 9 7 13 13 C 1.53048 * 109.27450 * 302.43753 * 12 11 9 14 14 N 1.46848 * 109.57298 * 59.08726 * 13 12 11 15 15 C 1.46892 * 110.99938 * 174.18963 * 14 13 12 16 16 C 1.50706 * 109.47366 * 294.20995 * 15 14 13 17 17 C 1.38737 * 120.80135 * 269.72510 * 16 15 14 18 18 Cl 1.73602 * 120.42403 * 359.97438 * 17 16 15 19 19 C 1.38334 * 119.15068 * 179.70718 * 17 16 15 20 20 N 1.31852 * 120.77420 * 0.57320 * 19 17 16 21 21 C 1.31862 * 121.75171 * 359.71979 * 20 19 17 22 22 C 1.38333 * 120.77110 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 120.42114 * 180.02562 * 22 21 20 24 24 C 1.46842 * 111.19688 * 298.28804 * 14 13 12 25 25 H 0.96992 * 120.00214 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52319 * 297.50132 * 11 9 7 27 27 H 1.08995 * 109.52318 * 57.62814 * 11 9 7 28 28 H 1.09000 * 109.50719 * 62.32149 * 12 11 9 29 29 H 1.09003 * 109.50116 * 182.43702 * 12 11 9 30 30 H 1.08999 * 109.41208 * 299.06816 * 13 12 11 31 31 H 1.09000 * 109.46050 * 179.13236 * 13 12 11 32 32 H 1.08998 * 109.47248 * 54.20814 * 15 14 13 33 33 H 1.09002 * 109.47520 * 174.21343 * 15 14 13 34 34 H 1.08005 * 119.61446 * 180.27168 * 19 17 16 35 35 H 1.07999 * 119.61749 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.46203 * 301.72398 * 24 14 13 37 37 H 1.09006 * 109.45199 * 181.75359 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6256 -2.5582 0.8925 11 6 0.3700 -2.5819 -1.2479 12 6 -0.3456 -3.9354 -1.2711 13 6 0.6946 -5.0575 -1.2373 14 7 1.5113 -4.9348 -0.0230 15 6 2.4288 -6.0740 0.1116 16 6 1.6344 -7.3354 0.3332 17 6 1.3121 -7.7558 1.6155 18 17 1.8196 -6.8344 2.9964 19 6 0.5762 -8.9158 1.7792 20 7 0.1923 -9.6241 0.7355 21 6 0.4854 -9.2585 -0.4971 22 6 1.2127 -8.1071 -0.7397 23 17 1.5928 -7.6339 -2.3662 24 6 2.2449 -3.6629 -0.0029 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3679 -1.7799 -1.2271 27 1 0.9907 -2.4827 -2.1384 28 1 -0.9969 -4.0177 -0.4010 29 1 -0.9407 -4.0168 -2.1807 30 1 1.3360 -4.9835 -2.1154 31 1 0.1878 -6.0225 -1.2381 32 1 3.0212 -6.1729 -0.7980 33 1 3.0917 -5.9083 0.9608 34 1 0.3173 -9.2476 2.7739 35 1 0.1537 -9.8650 -1.3268 36 1 2.8791 -3.5955 -0.8869 37 1 2.8642 -3.6152 0.8929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877622493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:10 Heat of formation + Delta-G solvation = 21.158994 kcal Electronic energy + Delta-G solvation = -21951.199020 eV Core-core repulsion = 18586.837090 eV Total energy + Delta-G solvation = -3364.361931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69529 -38.25369 -36.95320 -36.65843 -34.53771 -32.71356 -31.21817 -31.14694 -29.82625 -26.69183 -25.00007 -23.82010 -23.05186 -21.77420 -21.02961 -18.66554 -17.32762 -17.23519 -16.52245 -16.27931 -15.56820 -14.71655 -14.70077 -14.28820 -14.14711 -13.85426 -13.32540 -12.94466 -12.58794 -12.53681 -12.40244 -12.10896 -11.92042 -11.74371 -11.67974 -11.30602 -11.02910 -10.94403 -10.68896 -10.57006 -10.09618 -9.97202 -9.79867 -9.67569 -9.47745 -9.08717 -9.02890 -8.71338 -8.30688 -7.74578 -5.97494 -4.03826 0.52532 0.72016 1.63504 2.02989 3.23728 3.30507 3.37601 3.40330 4.10479 4.21403 4.30256 4.42354 4.60606 4.72624 4.86421 5.23735 5.32652 5.39453 5.62730 5.72046 5.73576 5.89449 6.01338 6.07234 6.24686 6.36779 6.49017 6.70136 6.73591 6.93123 7.20002 7.35753 7.42097 7.58028 7.69979 7.77001 8.07644 8.17121 8.47041 9.00052 9.60498 11.08410 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.004156 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.891069 B = 6735.800921 C = 7555.844921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.524 5.524 15 C 0.080 3.920 16 C -0.007 4.007 17 C -0.063 4.063 18 Cl -0.029 7.029 19 C 0.113 3.887 20 N -0.459 5.459 21 C 0.113 3.887 22 C -0.079 4.079 23 Cl -0.038 7.038 24 C 0.070 3.930 25 H 0.259 0.741 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.028 0.972 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.021 0.979 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 -18.443 -0.129 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.249 5.249 15 C -0.048 4.048 16 C -0.017 4.017 17 C -0.093 4.093 18 Cl 0.000 7.000 19 C -0.045 4.045 20 N -0.168 5.168 21 C -0.045 4.045 22 C -0.108 4.108 23 Cl -0.009 7.009 24 C -0.056 4.056 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.187 0.813 36 H 0.040 0.960 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.241 -18.938 0.388 18.983 hybrid contribution 1.524 1.809 -0.930 2.542 sum 2.765 -17.129 -0.542 17.359 Atomic orbital electron populations 1.69886 1.05837 1.26320 1.50587 1.24921 0.94803 0.98908 0.95111 0.86638 0.79902 0.83688 0.78010 1.20805 1.21256 1.19971 1.21126 0.92802 0.90612 1.50808 0.92846 1.18650 0.92529 0.90082 0.94912 0.94701 1.21654 1.00045 0.94672 0.98447 1.21682 0.97191 0.96483 1.00138 1.22293 0.95692 0.98821 0.90044 1.62078 1.23062 1.01242 1.38480 1.21158 0.93673 0.87538 1.02429 1.20166 0.95286 0.96052 0.90153 1.21920 1.02072 0.95751 0.89510 1.98414 1.89163 1.72839 1.39562 1.22895 0.92933 0.89633 0.99011 1.67941 1.19583 1.30768 0.98523 1.22840 0.93677 0.92810 0.95158 1.21994 1.03450 0.97928 0.87457 1.98401 1.92817 1.91516 1.18196 1.22346 0.96539 0.87816 0.98945 0.93059 0.89088 0.95174 0.92246 0.93537 0.95356 0.92514 0.92991 0.88827 0.81191 0.81314 0.96044 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.35 55.43 0.63 -24.54 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.91 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.40 2.27 -91.69 -0.21 1.20 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.59 5.02 -26.61 -0.13 -2.72 16 12 C -0.12 -2.30 6.10 -26.64 -0.16 -2.47 16 13 C 0.06 1.03 3.98 -3.83 -0.02 1.02 16 14 N -0.52 -9.36 4.65 -236.11 -1.10 -10.46 16 15 C 0.08 1.18 4.57 -4.98 -0.02 1.15 16 16 C -0.01 -0.09 4.91 -104.25 -0.51 -0.60 16 17 C -0.06 -0.78 6.34 -39.36 -0.25 -1.03 16 18 Cl -0.03 -0.36 27.47 -51.86 -1.42 -1.79 16 19 C 0.11 1.23 10.99 -17.51 -0.19 1.04 16 20 N -0.46 -5.27 10.36 -13.19 -0.14 -5.41 16 21 C 0.11 1.21 10.99 -17.50 -0.19 1.02 16 22 C -0.08 -0.94 5.23 -39.36 -0.21 -1.15 16 23 Cl -0.04 -0.45 24.45 -51.86 -1.27 -1.71 16 24 C 0.07 1.44 4.68 -3.84 -0.02 1.42 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 26 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.50 7.57 -51.93 -0.39 0.10 16 31 H 0.06 0.91 5.08 -51.93 -0.26 0.65 16 32 H 0.05 0.75 7.01 -51.93 -0.36 0.38 16 33 H 0.09 1.34 6.86 -51.93 -0.36 0.98 16 34 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 LS Contribution 321.64 15.07 4.85 4.85 Total: -1.00 -28.19 321.64 -10.39 -38.58 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.61 Total: -1.96 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.30 Total: -13.66 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.61 Total: -40.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -2.69 Total: -3.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.19 -10.39 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.740 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds