Wall clock time and date at job start Tue Mar 31 2020 11:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99932 * 2 1 4 4 H 1.48504 * 109.47007 * 270.00065 * 3 2 1 5 5 H 1.48495 * 109.47367 * 29.99936 * 3 2 1 6 6 H 1.48500 * 109.47361 * 149.99980 * 3 2 1 7 7 C 1.37883 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99526 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00199 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.53881 * 299.90513 * 9 7 2 11 11 C 1.53123 * 109.50296 * 60.00045 * 9 7 2 12 12 C 1.53120 * 109.21163 * 177.56339 * 11 9 7 13 13 C 1.53048 * 109.27450 * 302.43753 * 12 11 9 14 14 N 1.46848 * 109.57298 * 59.08726 * 13 12 11 15 15 C 1.46892 * 110.99938 * 174.18963 * 14 13 12 16 16 C 1.50706 * 109.47366 * 294.20995 * 15 14 13 17 17 C 1.38737 * 120.80135 * 269.72510 * 16 15 14 18 18 Cl 1.73602 * 120.42403 * 359.97438 * 17 16 15 19 19 C 1.38334 * 119.15068 * 179.70718 * 17 16 15 20 20 N 1.31852 * 120.77420 * 0.57320 * 19 17 16 21 21 C 1.31862 * 121.75171 * 359.71979 * 20 19 17 22 22 C 1.38333 * 120.77110 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 120.42114 * 180.02562 * 22 21 20 24 24 C 1.46842 * 111.19688 * 298.28804 * 14 13 12 25 25 H 0.96992 * 120.00214 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52319 * 297.50132 * 11 9 7 27 27 H 1.08995 * 109.52318 * 57.62814 * 11 9 7 28 28 H 1.09000 * 109.50719 * 62.32149 * 12 11 9 29 29 H 1.09003 * 109.50116 * 182.43702 * 12 11 9 30 30 H 1.08999 * 109.41208 * 299.06816 * 13 12 11 31 31 H 1.09000 * 109.46050 * 179.13236 * 13 12 11 32 32 H 1.08998 * 109.47248 * 54.20814 * 15 14 13 33 33 H 1.09002 * 109.47520 * 174.21343 * 15 14 13 34 34 H 1.08005 * 119.61446 * 180.27168 * 19 17 16 35 35 H 1.07999 * 119.61749 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.46203 * 301.72398 * 24 14 13 37 37 H 1.09006 * 109.45199 * 181.75359 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6256 -2.5582 0.8925 11 6 0.3700 -2.5819 -1.2479 12 6 -0.3456 -3.9354 -1.2711 13 6 0.6946 -5.0575 -1.2373 14 7 1.5113 -4.9348 -0.0230 15 6 2.4288 -6.0740 0.1116 16 6 1.6344 -7.3354 0.3332 17 6 1.3121 -7.7558 1.6155 18 17 1.8196 -6.8344 2.9964 19 6 0.5762 -8.9158 1.7792 20 7 0.1923 -9.6241 0.7355 21 6 0.4854 -9.2585 -0.4971 22 6 1.2127 -8.1071 -0.7397 23 17 1.5928 -7.6339 -2.3662 24 6 2.2449 -3.6629 -0.0029 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3679 -1.7799 -1.2271 27 1 0.9907 -2.4827 -2.1384 28 1 -0.9969 -4.0177 -0.4010 29 1 -0.9407 -4.0168 -2.1807 30 1 1.3360 -4.9835 -2.1154 31 1 0.1878 -6.0225 -1.2381 32 1 3.0212 -6.1729 -0.7980 33 1 3.0917 -5.9083 0.9608 34 1 0.3173 -9.2476 2.7739 35 1 0.1537 -9.8650 -1.3268 36 1 2.8791 -3.5955 -0.8869 37 1 2.8642 -3.6152 0.8929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877622493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:09 Heat of formation + Delta-G solvation = 5.323321 kcal Electronic energy + Delta-G solvation = -21951.885707 eV Core-core repulsion = 18586.837090 eV Total energy + Delta-G solvation = -3365.048617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63727 -39.75119 -37.88377 -37.62050 -36.05828 -34.35960 -32.65424 -32.05139 -31.62121 -27.93839 -26.94187 -24.75719 -24.36330 -23.36662 -22.45183 -20.40505 -18.51981 -18.26072 -18.09116 -17.32357 -16.96709 -16.50494 -15.73411 -15.57709 -15.36329 -15.19408 -14.97452 -14.46685 -14.15993 -13.78912 -13.59503 -13.53740 -13.27245 -12.91842 -12.85811 -12.76441 -12.60159 -12.49326 -12.39699 -11.93965 -11.79901 -11.65930 -11.39184 -11.01731 -10.80047 -10.67026 -10.53728 -10.36414 -9.96680 -9.18984 -8.06727 -6.20638 -0.34543 -0.23690 0.71635 1.10245 1.41715 1.42774 1.52526 2.33303 2.44325 3.05728 3.20667 3.31172 3.34409 3.42519 3.78217 3.95120 4.14191 4.20962 4.30944 4.36728 4.51782 4.58617 4.60659 4.71867 4.83419 4.88395 4.96524 5.07010 5.16373 5.17696 5.37263 5.51344 5.64672 5.93234 6.10569 6.19375 6.21819 6.44725 6.55761 6.91899 7.47280 8.97875 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.004156 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.891069 B = 6735.800921 C = 7555.844921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.056 3.944 10 H -0.003 1.003 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.069 3.931 14 N -0.532 5.532 15 C 0.084 3.916 16 C -0.022 4.022 17 C -0.071 4.071 18 Cl -0.036 7.036 19 C 0.119 3.881 20 N -0.466 5.466 21 C 0.121 3.879 22 C -0.084 4.084 23 Cl -0.036 7.036 24 C 0.085 3.915 25 H 0.259 0.741 26 H 0.057 0.943 27 H 0.023 0.977 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.195 0.805 35 H 0.197 0.803 36 H 0.020 0.980 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 -20.033 -0.574 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.015 0.985 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.059 4.059 14 N -0.257 5.257 15 C -0.043 4.043 16 C -0.032 4.032 17 C -0.101 4.101 18 Cl -0.007 7.007 19 C -0.038 4.038 20 N -0.175 5.175 21 C -0.037 4.037 22 C -0.113 4.113 23 Cl -0.007 7.007 24 C -0.042 4.042 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.212 0.788 35 H 0.214 0.786 36 H 0.038 0.962 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.653 -20.546 -0.057 20.613 hybrid contribution 1.370 2.242 -0.778 2.740 sum 3.023 -18.304 -0.835 18.571 Atomic orbital electron populations 1.70033 1.07177 1.26996 1.51264 1.25686 0.95590 1.02213 0.94820 0.85650 0.78796 0.79609 0.78151 1.20226 1.21055 1.19252 1.21505 0.93016 0.92051 1.50699 0.92914 1.18551 0.92887 0.91182 0.93671 0.98511 1.21449 0.99118 0.95956 0.97503 1.21596 0.97557 0.95120 1.00606 1.22217 0.95100 0.98574 0.90003 1.61949 1.23719 1.01168 1.38831 1.21105 0.93424 0.86958 1.02835 1.20083 0.96164 0.95826 0.91091 1.22020 1.02711 0.96335 0.89027 1.98413 1.89301 1.73122 1.39866 1.23283 0.91694 0.88741 1.00077 1.68049 1.19732 1.30834 0.98880 1.23284 0.92373 0.92290 0.95721 1.22061 1.03773 0.98321 0.87184 1.98404 1.92836 1.91546 1.17961 1.21988 0.95358 0.88031 0.98849 0.93136 0.92415 0.95801 0.93492 0.91476 0.94989 0.90538 0.92331 0.88671 0.78783 0.78591 0.96166 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.24 11.35 21.45 0.24 -53.00 16 2 C 0.02 0.87 5.30 84.66 0.45 1.32 16 3 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.53 -29.42 8.56 25.60 0.22 -29.20 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 9 C 0.06 2.83 2.27 -11.49 -0.03 2.80 16 10 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 11 C -0.10 -4.90 5.02 30.68 0.15 -4.74 16 12 C -0.11 -4.33 6.10 30.65 0.19 -4.14 16 13 C 0.07 2.30 3.98 86.33 0.34 2.65 16 14 N -0.53 -18.63 4.65 -900.91 -4.19 -22.82 16 15 C 0.08 2.37 4.57 85.56 0.39 2.76 16 16 C -0.02 -0.54 4.91 -19.62 -0.10 -0.64 16 17 C -0.07 -1.64 6.34 22.41 0.14 -1.49 16 18 Cl -0.04 -0.87 27.47 -2.72 -0.07 -0.94 16 19 C 0.12 2.32 10.99 84.71 0.93 3.25 16 20 N -0.47 -9.37 10.36 -195.65 -2.03 -11.39 16 21 C 0.12 2.23 10.99 84.71 0.93 3.16 16 22 C -0.08 -1.80 5.23 22.41 0.12 -1.69 16 23 Cl -0.04 -0.77 24.45 -2.72 -0.07 -0.83 16 24 C 0.08 3.51 4.68 86.33 0.40 3.91 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.06 3.15 6.15 -2.39 -0.01 3.14 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.03 1.06 7.57 -2.39 -0.02 1.05 16 31 H 0.08 2.30 5.08 -2.39 -0.01 2.29 16 32 H 0.06 1.58 7.01 -2.39 -0.02 1.56 16 33 H 0.10 2.63 6.86 -2.39 -0.02 2.62 16 34 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 2.49 8.02 -2.38 -0.02 2.47 16 Total: -1.00 -61.00 321.64 1.15 -59.85 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.09 Total: 5.51 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.15 Total: -22.06 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -5.97 Total: -87.21 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.14 Total: -1.77 kcal Total: -61.00 1.15 -59.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877622493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.173 kcal (2) G-P(sol) polarization free energy of solvation -60.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds