Wall clock time and date at job start Tue Mar 31 2020 10:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47031 * 2 1 4 4 H 1.08995 * 109.46988 * 304.99298 * 3 2 1 5 5 O 1.45199 * 109.47455 * 64.99748 * 3 2 1 6 6 C 1.34222 * 116.99682 * 270.00023 * 5 3 2 7 7 O 1.20822 * 120.00356 * 0.02562 * 6 5 3 8 8 C 1.50711 * 119.99709 * 179.97438 * 6 5 3 9 9 S 1.80997 * 109.46979 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99927 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99481 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99877 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00206 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47167 * 89.99721 * 14 12 10 16 16 H 1.48502 * 109.47350 * 209.99720 * 14 12 10 17 17 H 1.48496 * 109.47295 * 329.99681 * 14 12 10 18 18 C 1.50706 * 109.46958 * 184.99981 * 3 2 1 19 19 C 1.38244 * 119.98773 * 99.99673 * 18 3 2 20 20 C 1.38217 * 120.01084 * 180.02562 * 19 18 3 21 21 C 1.38351 * 119.98541 * 0.25893 * 20 19 18 22 22 Cl 1.73604 * 120.00786 * 179.69323 * 21 20 19 23 23 C 1.38348 * 119.97455 * 359.46866 * 21 20 19 24 24 C 1.38212 * 119.98576 * 0.54994 * 23 21 20 25 25 H 1.09005 * 109.46594 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47348 * 300.00208 * 1 2 3 27 27 H 1.08996 * 109.47066 * 60.00516 * 1 2 3 28 28 H 1.09004 * 109.47220 * 239.99379 * 2 1 3 29 29 H 1.09012 * 109.47004 * 119.99791 * 2 1 3 30 30 H 1.08996 * 109.46811 * 299.99848 * 8 6 5 31 31 H 1.08999 * 109.47095 * 59.99987 * 8 6 5 32 32 H 0.96999 * 119.99921 * 179.97438 * 13 12 10 33 33 H 1.07999 * 119.99331 * 0.02562 * 19 18 3 34 34 H 1.08002 * 120.00169 * 179.97438 * 20 19 18 35 35 H 1.08007 * 120.00586 * 180.25470 * 23 21 20 36 36 H 1.08000 * 119.99226 * 179.72624 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 8 1.6558 2.0917 1.2406 6 6 0.4727 2.7254 1.2558 7 8 -0.2192 2.7369 0.2654 8 6 0.0069 3.4217 2.5086 9 16 -1.6123 4.1750 2.2136 10 6 -1.9057 4.8980 3.7934 11 1 -1.1737 4.7916 4.5803 12 6 -3.0776 5.6042 4.0265 13 7 -3.2971 6.1439 5.2069 14 14 -4.3440 5.7876 2.6657 15 1 -5.3055 4.6576 2.7287 16 1 -5.0743 7.0690 2.8384 17 1 -3.6592 5.7818 1.3481 18 6 3.5419 1.4443 -0.1238 19 6 4.1339 1.6871 -1.3493 20 6 5.5114 1.6883 -1.4635 21 6 6.2976 1.4412 -0.3522 22 17 8.0276 1.4347 -0.4967 23 6 5.7046 1.2038 0.8750 24 6 4.3271 1.2024 0.9879 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8901 30 1 -0.0721 2.6971 3.3189 31 1 0.7238 4.1959 2.7820 32 1 -4.1159 6.6378 5.3697 33 1 3.5200 1.8759 -2.2175 34 1 5.9737 1.8776 -2.4210 35 1 6.3180 1.0148 1.7437 36 1 3.8641 1.0128 1.9450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920843213.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:06 Heat of formation + Delta-G solvation = -80.225178 kcal Electronic energy + Delta-G solvation = -20664.821088 eV Core-core repulsion = 17265.813766 eV Total energy + Delta-G solvation = -3399.007323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71474 -39.46994 -37.01567 -36.34545 -33.95758 -32.51371 -31.43169 -31.19186 -29.82727 -26.39148 -25.68808 -23.30904 -22.55101 -21.78570 -20.42504 -18.06959 -17.70442 -17.30351 -16.50815 -16.12075 -15.61798 -15.16705 -14.98641 -14.40813 -14.15784 -14.04801 -13.84096 -13.82936 -13.40687 -12.88080 -12.68003 -12.53584 -12.29286 -12.06239 -11.83087 -11.70278 -11.37852 -11.29364 -11.16297 -11.07451 -10.94225 -10.75085 -10.44730 -10.12367 -9.89314 -9.38377 -9.07767 -8.95311 -8.64375 -7.04630 -6.35593 -4.09987 0.70982 0.95149 1.78390 2.37720 2.49711 3.03685 3.26803 3.29104 3.43106 3.49805 4.23981 4.26471 4.43121 4.53446 4.63932 4.74735 4.85100 4.98520 5.00503 5.03213 5.05473 5.28779 5.39080 5.42300 5.61011 5.61671 5.65671 5.81644 5.84563 5.87768 5.92407 5.98901 6.16372 6.29893 6.41742 6.59144 7.87246 8.00698 8.35994 9.09416 10.73483 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.002669 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.288241 B =10487.113435 C =11080.948429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.128 3.872 4 H 0.097 0.903 5 O -0.350 6.350 6 C 0.479 3.521 7 O -0.484 6.484 8 C -0.100 4.100 9 S -0.138 6.138 10 C -0.523 4.523 11 H 0.091 0.909 12 C 0.097 3.903 13 N -0.877 5.877 14 Si 0.856 3.144 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.235 1.235 18 C -0.082 4.082 19 C -0.094 4.094 20 C -0.111 4.111 21 C -0.032 4.032 22 Cl -0.073 7.073 23 C -0.112 4.112 24 C -0.078 4.078 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.272 0.728 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.181 -12.619 -12.160 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.073 3.927 4 H 0.115 0.885 5 O -0.268 6.268 6 C 0.321 3.679 7 O -0.369 6.369 8 C -0.248 4.248 9 S 0.088 5.912 10 C -0.670 4.670 11 H 0.109 0.891 12 C -0.112 4.112 13 N -0.513 5.513 14 Si 0.681 3.319 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.160 1.160 18 C -0.082 4.082 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.059 4.059 22 Cl -0.044 7.044 23 C -0.131 4.131 24 C -0.096 4.096 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.377 -12.518 -13.305 25.213 hybrid contribution 0.287 0.227 0.729 0.815 sum 17.664 -12.292 -12.577 24.926 Atomic orbital electron populations 1.21862 0.94142 1.01672 1.03375 1.21957 0.97396 0.94356 1.03260 1.21494 0.90199 0.94071 0.86951 0.88538 1.86562 1.37883 1.64024 1.38328 1.23212 0.78677 0.75722 0.90337 1.90661 1.54208 1.56789 1.35282 1.23018 1.03444 1.02770 0.95590 1.84785 1.16670 1.68038 1.21692 1.22261 1.09402 1.39465 0.95882 0.89069 1.24699 0.97228 0.93624 0.95664 1.69932 1.26478 1.33550 1.21327 0.86748 0.82534 0.78699 0.83922 1.19137 1.19802 1.15955 1.19777 0.94131 1.00197 0.94084 1.20963 0.94065 0.98856 0.97338 1.20996 0.93194 1.00811 0.98007 1.21000 0.84580 1.04652 0.95669 1.98376 1.10792 1.96999 1.98269 1.21107 0.95086 1.00568 0.96289 1.21060 0.92325 0.97107 0.99149 0.92554 0.92383 0.91653 0.90235 0.90785 0.87267 0.87228 0.91804 0.84731 0.84680 0.84661 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.57 37.16 0.32 -1.54 16 2 C -0.13 -1.36 5.63 -26.73 -0.15 -1.51 16 3 C 0.13 1.50 2.46 -27.88 -0.07 1.43 16 4 H 0.10 1.20 7.02 -51.93 -0.36 0.83 16 5 O -0.35 -4.97 9.15 -39.24 -0.36 -5.33 16 6 C 0.48 8.20 6.43 36.01 0.23 8.43 16 7 O -0.48 -9.22 13.00 -18.75 -0.24 -9.46 16 8 C -0.10 -1.89 6.27 36.01 0.23 -1.66 16 9 S -0.14 -3.34 18.55 -107.50 -1.99 -5.33 16 10 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 11 H 0.09 2.67 8.03 -52.49 -0.42 2.24 16 12 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -25.93 13.97 55.49 0.78 -25.15 16 14 Si 0.86 21.12 27.74 -169.99 -4.71 16.41 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 18 C -0.08 -0.83 4.98 -104.62 -0.52 -1.35 16 19 C -0.09 -0.83 9.67 -39.59 -0.38 -1.21 16 20 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 21 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 22 Cl -0.07 -0.63 28.96 -51.86 -1.50 -2.13 16 23 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 24 C -0.08 -0.76 9.36 -39.59 -0.37 -1.13 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.84 6.06 -51.93 -0.31 0.53 16 27 H 0.06 0.84 7.80 -51.93 -0.40 0.44 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.11 1.92 8.14 -51.92 -0.42 1.50 16 31 H 0.11 1.96 8.14 -51.92 -0.42 1.53 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 33 H 0.13 0.95 8.04 -52.49 -0.42 0.53 16 34 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.14 1.29 7.78 -52.49 -0.41 0.88 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -30.63 337.04 -8.94 -39.57 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.45 Total: -0.21 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.53 Total: -13.44 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.78 Total: -25.15 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.60 Total: -14.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.33 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.63 -8.94 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920843213.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.659 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds