Wall clock time and date at job start Tue Mar 31 2020 11:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00280 * 2 1 4 4 H 1.48496 * 109.47194 * 274.98820 * 3 2 1 5 5 H 1.48497 * 109.46921 * 34.98598 * 3 2 1 6 6 H 1.48497 * 109.47281 * 154.98358 * 3 2 1 7 7 C 1.38816 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00225 * 187.05613 * 7 2 1 9 9 N 1.36935 * 119.99872 * 7.06046 * 7 2 1 10 10 C 1.47019 * 125.64896 * 354.78523 * 9 7 2 11 11 C 1.54323 * 107.27251 * 178.97711 * 10 9 7 12 12 C 1.55163 * 102.94156 * 337.81016 * 11 10 9 13 13 H 1.09001 * 111.00072 * 277.38553 * 12 11 10 14 14 C 1.53002 * 111.00364 * 153.57579 * 12 11 10 15 15 N 1.46502 * 109.46843 * 178.17815 * 14 12 11 16 16 C 1.34774 * 120.00030 * 180.02562 * 15 14 12 17 17 O 1.21643 * 120.00022 * 0.27375 * 16 15 14 18 18 C 1.47162 * 120.00082 * 179.97438 * 16 15 14 19 19 C 1.36041 * 123.46509 * 0.02656 * 18 16 15 20 20 S 1.70446 * 110.83158 * 180.02562 * 19 18 16 21 21 C 1.75511 * 92.45499 * 359.97438 * 20 19 18 22 22 C 1.32838 * 110.57806 * 359.71436 * 21 20 19 23 23 Cl 1.73601 * 123.47008 * 180.28223 * 22 21 20 24 24 C 1.47472 * 125.62740 * 174.78853 * 9 7 2 25 25 H 0.97001 * 119.99904 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.88259 * 59.56396 * 10 9 7 27 27 H 1.09000 * 110.01528 * 298.46640 * 10 9 7 28 28 H 1.09003 * 110.72188 * 219.44716 * 11 10 9 29 29 H 1.09002 * 110.87232 * 96.23835 * 11 10 9 30 30 H 1.08998 * 109.47256 * 58.18081 * 14 12 11 31 31 H 1.08987 * 109.47037 * 298.17618 * 14 12 11 32 32 H 0.96997 * 119.99852 * 359.97438 * 15 14 12 33 33 H 1.07999 * 124.58628 * 0.03025 * 19 18 16 34 34 H 1.07995 * 124.70809 * 179.97438 * 21 20 19 35 35 H 1.09002 * 110.34849 * 85.25542 * 24 9 7 36 36 H 1.09003 * 110.40531 * 322.91597 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0842 -1.2058 0.1154 9 7 1.3333 -2.3836 -0.1447 10 6 -0.1283 -2.5324 -0.2012 11 6 -0.4289 -4.0334 -0.3967 12 6 0.8911 -4.5756 -1.0060 13 1 0.9254 -4.4014 -2.0814 14 6 1.0721 -6.0613 -0.6881 15 7 2.3038 -6.5480 -1.3145 16 6 2.6697 -7.8370 -1.1694 17 8 1.9747 -8.5975 -0.5226 18 6 3.9067 -8.3261 -1.7990 19 6 4.7325 -7.5398 -2.5409 20 16 6.0660 -8.4329 -3.1148 21 6 5.5083 -9.9062 -2.3409 22 6 4.3724 -9.6892 -1.6874 23 17 3.5308 -10.9183 -0.7959 24 6 1.9501 -3.7173 -0.2702 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5267 -1.9623 -1.0404 27 1 -0.5751 -2.1830 0.7296 28 1 -1.2593 -4.1735 -1.0887 29 1 -0.6391 -4.5149 0.5584 30 1 0.2215 -6.6220 -1.0754 31 1 1.1355 -6.1967 0.3914 32 1 2.8556 -5.9428 -1.8341 33 1 4.5658 -6.4913 -2.7394 34 1 6.0200 -10.8561 -2.3861 35 1 2.1572 -4.1334 0.7157 36 1 2.8660 -3.6586 -0.8583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028612791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:44 Heat of formation + Delta-G solvation = 14.845290 kcal Electronic energy + Delta-G solvation = -20918.971016 eV Core-core repulsion = 17556.379009 eV Total energy + Delta-G solvation = -3362.592007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.060 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98221 -37.94600 -37.28283 -36.08795 -34.67000 -32.56283 -30.58519 -29.55783 -28.20601 -25.86510 -25.01397 -23.52497 -21.52493 -20.19767 -19.98710 -19.29176 -18.48281 -17.34495 -16.75562 -15.87593 -15.40583 -15.19603 -14.68508 -14.55899 -13.83770 -13.77773 -13.67020 -13.37721 -13.21587 -12.94223 -12.36110 -12.03828 -11.85336 -11.75758 -11.68217 -11.39357 -10.97618 -10.92038 -10.82847 -10.41510 -10.16182 -10.03067 -9.89965 -9.72826 -9.68884 -9.36974 -9.01123 -8.70375 -8.59828 -6.85370 -5.74836 -3.07299 0.32787 0.88701 1.30480 1.49418 2.32881 3.14270 3.23182 3.37889 3.43046 3.45395 4.25401 4.47178 4.75189 4.88020 5.00150 5.09706 5.21423 5.40227 5.44144 5.51283 5.52324 5.67743 5.87474 6.04075 6.04899 6.32568 6.40953 6.46720 6.52013 6.66229 6.88590 7.49794 7.53686 7.61786 7.80646 8.20435 8.23667 9.19402 9.80072 10.46607 11.37282 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.002852 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.467727 B = 9813.795423 C =10879.665321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.718 5.718 16 C 0.570 3.430 17 O -0.522 6.522 18 C -0.145 4.145 19 C -0.206 4.206 20 S 0.230 5.770 21 C -0.240 4.240 22 C -0.007 4.007 23 Cl -0.018 7.018 24 C 0.142 3.858 25 H 0.252 0.748 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.399 0.601 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.019 0.981 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 -19.466 -7.757 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.369 5.369 16 C 0.354 3.646 17 O -0.399 6.399 18 C -0.163 4.163 19 C -0.344 4.344 20 S 0.495 5.505 21 C -0.376 4.376 22 C -0.046 4.046 23 Cl 0.011 6.989 24 C 0.016 3.984 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.198 0.802 34 H 0.196 0.804 35 H 0.037 0.963 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.073 -19.522 -8.049 23.843 hybrid contribution -0.609 0.869 0.699 1.271 sum 10.464 -18.653 -7.350 22.615 Atomic orbital electron populations 1.69979 1.04928 1.25067 1.56662 1.24827 0.95698 0.97686 1.02127 0.86124 0.78697 0.83632 0.77485 1.21620 1.21747 1.20638 1.19053 0.91101 0.82593 1.43187 0.90483 1.44491 1.01734 1.00913 1.86131 1.21149 0.84404 0.88410 1.00871 1.22851 0.95230 0.99619 0.99611 1.22622 0.98686 0.91826 1.00655 0.90231 1.21429 0.85315 0.94049 0.98109 1.45909 1.26614 1.10076 1.54329 1.17420 0.84204 0.82322 0.80654 1.90848 1.53472 1.55306 1.40272 1.20048 0.98979 0.92519 1.04763 1.25718 1.00218 1.05417 1.03065 1.83169 1.21330 0.97453 1.48547 1.25437 1.00943 1.04533 1.06681 1.20661 0.94484 0.90264 0.99170 1.98403 1.76989 1.50625 1.72907 1.21583 0.93985 0.86674 0.96155 0.93730 0.93417 0.94069 0.91954 0.92149 0.91434 0.91122 0.76646 0.80235 0.80409 0.96301 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.36 55.49 0.57 -26.26 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.84 29.56 -169.99 -5.02 16.82 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.37 10.26 -15.06 -0.15 -6.52 16 8 H 0.08 2.05 7.84 -52.48 -0.41 1.63 16 9 N -0.61 -15.21 3.40 -170.04 -0.58 -15.79 16 10 C 0.18 4.21 5.38 -3.07 -0.02 4.20 16 11 C -0.13 -2.41 6.42 -24.89 -0.16 -2.57 16 12 C -0.12 -1.91 3.07 -88.47 -0.27 -2.18 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 1.91 5.12 -4.04 -0.02 1.89 16 15 N -0.72 -9.15 5.42 -61.47 -0.33 -9.48 16 16 C 0.57 8.02 7.79 -12.64 -0.10 7.92 16 17 O -0.52 -8.99 15.05 5.24 0.08 -8.91 16 18 C -0.14 -1.67 5.98 -104.61 -0.63 -2.29 16 19 C -0.21 -1.73 10.38 29.94 0.31 -1.42 16 20 S 0.23 1.48 23.02 -107.50 -2.47 -1.00 16 21 C -0.24 -1.91 11.00 28.87 0.32 -1.60 16 22 C -0.01 -0.08 6.49 -38.99 -0.25 -0.33 16 23 Cl -0.02 -0.22 27.24 -51.86 -1.41 -1.63 16 24 C 0.14 2.80 6.56 -2.50 -0.02 2.78 16 25 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.05 1.26 7.30 -51.93 -0.38 0.88 16 27 H 0.04 1.10 7.61 -51.93 -0.40 0.70 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.09 8.03 -51.94 -0.42 0.67 16 32 H 0.40 4.23 6.93 -40.82 -0.28 3.95 16 33 H 0.18 1.14 7.01 -52.49 -0.37 0.77 16 34 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.02 0.39 7.96 -51.93 -0.41 -0.03 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -32.66 328.96 -9.63 -42.29 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.33 Total: -0.58 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.08 Total: -0.42 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.34 Total: -51.53 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -1.00 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.41 Total: -1.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.66 -9.63 -42.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028612791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.138 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds