Wall clock time and date at job start Tue Mar 31 2020 10:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46881 * 269.99381 * 3 2 1 5 5 H 1.48496 * 109.47331 * 29.99798 * 3 2 1 6 6 H 1.48503 * 109.47049 * 149.99995 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34779 * 125.65165 * 178.97713 * 13 12 11 15 15 O 1.21573 * 120.00182 * 179.97438 * 14 13 12 16 16 C 1.47616 * 119.99607 * 359.97438 * 14 13 12 17 17 C 1.40333 * 120.59496 * 269.99757 * 16 14 13 18 18 F 1.35103 * 120.88496 * 359.97438 * 17 16 14 19 19 C 1.38753 * 118.23354 * 180.02562 * 17 16 14 20 20 C 1.38135 * 119.30944 * 359.97438 * 19 17 16 21 21 N 1.32006 * 121.16034 * 0.02562 * 20 19 17 22 22 C 1.31808 * 121.93998 * 359.70020 * 21 20 19 23 23 Cl 1.73602 * 119.72669 * 180.31329 * 22 21 20 24 24 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 25 25 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 27 27 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 28 28 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 29 29 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 30 30 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 31 31 H 1.07998 * 120.33963 * 179.97438 * 19 17 16 32 32 H 1.08004 * 119.42443 * 180.02562 * 20 19 17 33 33 H 1.09004 * 110.36953 * 265.31028 * 24 13 12 34 34 H 1.09001 * 110.41107 * 142.95306 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7057 -4.7400 2.1551 15 8 -1.5572 -4.0789 2.7171 16 6 -0.7462 -6.2137 2.2307 17 6 -1.4484 -6.9591 1.2712 18 9 -2.1020 -6.3469 0.2596 19 6 -1.4546 -8.3415 1.3897 20 6 -0.7759 -8.9335 2.4371 21 7 -0.1234 -8.2073 3.3256 22 6 -0.0818 -6.8917 3.2557 23 17 0.8007 -5.9936 4.4509 24 6 0.4352 -2.6694 1.3064 25 1 -0.4850 0.8402 -0.0004 26 1 -0.2523 -1.8949 -1.2146 27 1 2.5440 -4.0097 -0.9150 28 1 3.0856 -3.4629 0.7058 29 1 0.9490 -5.4571 -0.0263 30 1 1.9700 -5.3820 1.4353 31 1 -1.9845 -8.9484 0.6704 32 1 -0.7791 -10.0095 2.5308 33 1 0.9830 -2.2547 2.1526 34 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123810544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:31 Heat of formation + Delta-G solvation = -90.596807 kcal Electronic energy + Delta-G solvation = -24336.426846 eV Core-core repulsion = 20403.049350 eV Total energy + Delta-G solvation = -3933.377496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.32590 -40.60953 -39.16037 -37.24768 -36.87492 -34.35256 -32.53852 -32.23134 -31.75894 -30.10243 -27.94360 -25.81161 -24.38326 -23.89018 -22.58894 -19.82512 -19.53763 -18.38324 -17.95978 -17.37233 -16.99428 -16.19291 -15.51159 -15.48543 -15.18858 -14.87913 -14.71283 -14.53361 -14.30312 -14.26923 -13.20213 -13.07942 -12.90720 -12.51966 -11.99255 -11.92410 -11.69509 -11.54841 -11.46254 -11.08107 -10.88843 -10.68453 -10.51424 -10.39556 -10.24555 -9.96325 -9.65253 -9.44348 -9.36332 -8.73310 -8.44822 -7.93114 -6.32361 -4.42199 0.32082 0.53277 1.46236 2.72295 3.02684 3.18522 3.26655 3.28763 3.34255 3.55098 4.06140 4.23033 4.37915 4.49065 4.65297 4.92556 4.98516 5.25371 5.31856 5.35838 5.56826 5.72873 5.94354 5.96031 6.09044 6.42335 6.64768 6.76785 6.82352 7.17265 7.21320 7.27451 7.70079 7.94443 7.99579 8.42899 8.61733 9.26771 9.36773 10.75008 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.004403 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.046843 B = 6357.286059 C = 6825.240145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.102 3.898 13 N -0.591 5.591 14 C 0.571 3.429 15 O -0.525 6.525 16 C -0.183 4.183 17 C 0.190 3.810 18 F -0.105 7.105 19 C -0.207 4.207 20 C 0.154 3.846 21 N -0.483 5.483 22 C 0.228 3.772 23 Cl 0.002 6.998 24 C 0.094 3.906 25 H 0.271 0.729 26 H 0.384 0.616 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.066 0.934 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -16.432 3.094 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.021 4.021 13 N -0.322 5.322 14 C 0.355 3.645 15 O -0.403 6.403 16 C -0.191 4.191 17 C 0.162 3.838 18 F -0.083 7.083 19 C -0.227 4.227 20 C -0.002 4.002 21 N -0.194 5.194 22 C 0.063 3.937 23 Cl 0.031 6.969 24 C -0.027 4.027 25 H 0.081 0.919 26 H 0.235 0.765 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.179 0.821 32 H 0.198 0.802 33 H 0.084 0.916 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.069 -16.796 4.072 17.283 hybrid contribution -0.444 1.881 -0.609 2.026 sum -0.375 -14.915 3.463 15.317 Atomic orbital electron populations 1.69652 1.06032 1.28059 1.49481 1.25080 0.95036 0.99815 0.93231 0.86387 0.79775 0.82334 0.78332 1.20357 1.20973 1.19655 1.21463 0.93713 0.89940 1.52564 0.91378 1.19607 0.86127 0.91731 0.81596 1.86089 1.51490 1.55034 1.46595 1.22621 0.97693 0.94736 1.00306 1.22052 0.88756 0.96397 0.94896 1.48703 1.25093 1.10176 1.48221 1.17124 0.82117 0.84989 0.80290 1.90819 1.38267 1.65047 1.46130 1.20940 1.03358 0.97123 0.97653 1.17829 0.91017 0.90463 0.84525 1.91654 1.77377 1.83198 1.56067 1.22245 1.04879 0.92717 1.02897 1.22720 0.89541 1.00499 0.87487 1.67150 1.19614 1.04989 1.27695 1.21479 0.92924 0.89229 0.90023 1.98462 1.72820 1.71202 1.54407 1.23443 1.03045 0.75578 1.00594 0.91861 0.76476 0.90482 0.90131 0.92411 0.92582 0.82066 0.80232 0.91561 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.49 10.69 55.43 0.59 -22.90 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.69 8.26 -34.44 -0.28 -13.98 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 9 C 0.25 5.92 0.88 -89.62 -0.08 5.85 16 10 O -0.58 -14.67 13.17 -35.23 -0.46 -15.13 16 11 C -0.12 -2.25 6.13 -24.90 -0.15 -2.40 16 12 C 0.10 1.82 6.47 -3.07 -0.02 1.80 16 13 N -0.59 -12.21 3.33 -171.63 -0.57 -12.78 16 14 C 0.57 11.71 6.08 -12.43 -0.08 11.63 16 15 O -0.53 -12.57 17.36 5.30 0.09 -12.48 16 16 C -0.18 -3.02 4.83 -104.74 -0.51 -3.52 16 17 C 0.19 2.67 7.37 -38.60 -0.28 2.38 16 18 F -0.10 -1.66 16.93 2.25 0.04 -1.62 16 19 C -0.21 -1.94 10.09 -39.43 -0.40 -2.34 16 20 C 0.15 1.36 11.16 -17.51 -0.20 1.16 16 21 N -0.48 -6.01 10.33 -10.05 -0.10 -6.12 16 22 C 0.23 3.39 7.31 -17.02 -0.12 3.27 16 23 Cl 0.00 0.03 28.20 -51.86 -1.46 -1.43 16 24 C 0.09 2.22 5.51 -2.47 -0.01 2.21 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.38 10.00 7.25 45.56 0.33 10.33 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 29 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.07 1.60 8.03 -51.93 -0.42 1.18 16 34 H 0.09 2.34 7.48 -51.93 -0.39 1.95 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -29.98 317.66 -6.89 -36.86 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -2.55 Total: 7.98 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -2.23 Total: 7.80 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.08 Total: -41.79 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.37 Total: -27.61 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.46 Total: -1.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.98 -6.89 -36.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123810544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.733 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds