Wall clock time and date at job start Tue Mar 31 2020 10:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46881 * 269.99381 * 3 2 1 5 5 H 1.48496 * 109.47331 * 29.99798 * 3 2 1 6 6 H 1.48503 * 109.47049 * 149.99995 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34779 * 125.65165 * 178.97713 * 13 12 11 15 15 O 1.21573 * 120.00182 * 179.97438 * 14 13 12 16 16 C 1.47616 * 119.99607 * 359.97438 * 14 13 12 17 17 C 1.40333 * 120.59496 * 269.99757 * 16 14 13 18 18 F 1.35103 * 120.88496 * 359.97438 * 17 16 14 19 19 C 1.38753 * 118.23354 * 180.02562 * 17 16 14 20 20 C 1.38135 * 119.30944 * 359.97438 * 19 17 16 21 21 N 1.32006 * 121.16034 * 0.02562 * 20 19 17 22 22 C 1.31808 * 121.93998 * 359.70020 * 21 20 19 23 23 Cl 1.73602 * 119.72669 * 180.31329 * 22 21 20 24 24 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 25 25 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 27 27 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 28 28 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 29 29 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 30 30 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 31 31 H 1.07998 * 120.33963 * 179.97438 * 19 17 16 32 32 H 1.08004 * 119.42443 * 180.02562 * 20 19 17 33 33 H 1.09004 * 110.36953 * 265.31028 * 24 13 12 34 34 H 1.09001 * 110.41107 * 142.95306 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7057 -4.7400 2.1551 15 8 -1.5572 -4.0789 2.7171 16 6 -0.7462 -6.2137 2.2307 17 6 -1.4484 -6.9591 1.2712 18 9 -2.1020 -6.3469 0.2596 19 6 -1.4546 -8.3415 1.3897 20 6 -0.7759 -8.9335 2.4371 21 7 -0.1234 -8.2073 3.3256 22 6 -0.0818 -6.8917 3.2557 23 17 0.8007 -5.9936 4.4509 24 6 0.4352 -2.6694 1.3064 25 1 -0.4850 0.8402 -0.0004 26 1 -0.2523 -1.8949 -1.2146 27 1 2.5440 -4.0097 -0.9150 28 1 3.0856 -3.4629 0.7058 29 1 0.9490 -5.4571 -0.0263 30 1 1.9700 -5.3820 1.4353 31 1 -1.9845 -8.9484 0.6704 32 1 -0.7791 -10.0095 2.5308 33 1 0.9830 -2.2547 2.1526 34 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123810544.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:30 Heat of formation + Delta-G solvation = -112.672501 kcal Electronic energy + Delta-G solvation = -24337.384120 eV Core-core repulsion = 20403.049350 eV Total energy + Delta-G solvation = -3934.334769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.43633 -41.77742 -40.61554 -38.97557 -37.96952 -36.17100 -34.21961 -33.64046 -32.77929 -31.70278 -29.69689 -27.46542 -25.77614 -24.87761 -24.09423 -21.57090 -21.03749 -19.44064 -19.22905 -18.95080 -18.57085 -17.48324 -17.09235 -16.79197 -16.67253 -16.39302 -16.22920 -15.58138 -15.47141 -15.35965 -14.92460 -14.73985 -14.72659 -13.95115 -13.53740 -13.38020 -13.24155 -12.96767 -12.86683 -12.61807 -12.58993 -12.36846 -12.26077 -12.16537 -11.62841 -11.28490 -11.07636 -10.88907 -10.67773 -10.40705 -10.33014 -9.66573 -8.27421 -6.44607 -0.65003 -0.43592 0.40742 1.19566 1.41886 1.44217 1.53794 1.79060 2.18917 2.37388 2.54716 2.98454 3.04075 3.32376 3.47427 3.67701 3.70687 4.00263 4.05024 4.13188 4.24925 4.38170 4.50311 4.63435 4.66151 4.94595 5.00323 5.14268 5.18485 5.31280 5.40617 5.72963 6.01414 6.30945 6.39043 6.63506 6.82904 7.25979 7.33483 8.78395 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.004403 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.046843 B = 6357.286059 C = 6825.240145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.027 3.973 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.235 3.765 10 O -0.588 6.588 11 C -0.109 4.109 12 C 0.107 3.893 13 N -0.595 5.595 14 C 0.570 3.430 15 O -0.575 6.575 16 C -0.211 4.211 17 C 0.168 3.832 18 F -0.123 7.123 19 C -0.174 4.174 20 C 0.175 3.825 21 N -0.488 5.488 22 C 0.222 3.778 23 Cl -0.014 7.014 24 C 0.107 3.893 25 H 0.270 0.730 26 H 0.376 0.624 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.208 0.792 32 H 0.239 0.761 33 H 0.052 0.948 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -19.705 2.726 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.090 0.910 9 C 0.194 3.806 10 O -0.397 6.397 11 C -0.147 4.147 12 C -0.015 4.015 13 N -0.325 5.325 14 C 0.356 3.644 15 O -0.456 6.456 16 C -0.218 4.218 17 C 0.140 3.860 18 F -0.102 7.102 19 C -0.194 4.194 20 C 0.019 3.981 21 N -0.200 5.200 22 C 0.058 3.942 23 Cl 0.015 6.985 24 C -0.015 4.015 25 H 0.080 0.920 26 H 0.225 0.775 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.225 0.775 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.079 -20.106 3.695 20.471 hybrid contribution -0.798 2.752 -0.507 2.910 sum 0.281 -17.354 3.187 17.646 Atomic orbital electron populations 1.69776 1.07268 1.28536 1.50124 1.25828 0.95707 1.02886 0.92940 0.85441 0.78719 0.78508 0.78302 1.19967 1.21245 1.18835 1.21799 0.94097 0.90990 1.52489 0.90960 1.19839 0.86587 0.93292 0.80833 1.86078 1.51497 1.54645 1.47443 1.22629 0.97301 0.93194 1.01572 1.22157 0.87970 0.95887 0.95501 1.48737 1.26134 1.09044 1.48614 1.17752 0.80852 0.86950 0.78808 1.90770 1.39924 1.66909 1.47950 1.20613 1.06711 0.94240 1.00257 1.18257 0.91465 0.92181 0.84072 1.91611 1.77869 1.83892 1.56782 1.22770 1.03113 0.90420 1.03126 1.23771 0.86478 1.02538 0.85359 1.67278 1.20356 1.03561 1.28813 1.21364 0.93290 0.90067 0.89483 1.98452 1.73173 1.71929 1.54932 1.22999 1.00572 0.77618 1.00356 0.92045 0.77476 0.89237 0.88779 0.91287 0.89681 0.77519 0.74543 0.92961 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.11 10.69 21.45 0.23 -49.88 16 2 C 0.03 1.42 5.29 84.65 0.45 1.86 16 3 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.56 -28.62 8.26 25.60 0.21 -28.41 16 8 H 0.07 3.57 7.78 -2.91 -0.02 3.55 16 9 C 0.23 11.35 0.88 -10.15 -0.01 11.34 16 10 O -0.59 -30.45 13.17 -148.98 -1.96 -32.41 16 11 C -0.11 -4.14 6.13 31.78 0.19 -3.95 16 12 C 0.11 3.69 6.47 86.73 0.56 4.26 16 13 N -0.59 -25.21 3.33 -815.19 -2.71 -27.93 16 14 C 0.57 24.14 6.08 86.72 0.53 24.67 16 15 O -0.57 -29.17 17.36 -3.95 -0.07 -29.24 16 16 C -0.21 -6.80 4.83 -19.94 -0.10 -6.90 16 17 C 0.17 4.39 7.37 22.90 0.17 4.56 16 18 F -0.12 -3.83 16.93 44.97 0.76 -3.07 16 19 C -0.17 -2.41 10.09 22.37 0.23 -2.18 16 20 C 0.17 2.10 11.16 84.64 0.94 3.04 16 21 N -0.49 -10.44 10.33 -185.71 -1.92 -12.35 16 22 C 0.22 6.27 7.31 85.05 0.62 6.90 16 23 Cl -0.01 -0.41 28.20 -2.72 -0.08 -0.48 16 24 C 0.11 5.30 5.51 86.84 0.48 5.78 16 25 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 26 H 0.38 20.51 7.25 -74.06 -0.54 19.97 16 27 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.09 3.28 8.03 -2.39 -0.02 3.26 16 29 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.21 1.01 8.06 -2.91 -0.02 0.98 16 32 H 0.24 0.16 8.06 -2.91 -0.02 0.13 16 33 H 0.05 2.67 8.03 -2.38 -0.02 2.65 16 34 H 0.05 2.72 7.48 -2.39 -0.02 2.70 16 Total: -1.00 -70.30 317.66 1.18 -69.11 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.63 Total: 21.70 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 4.28 Total: 20.97 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -4.40 Total: -90.16 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -2.03 Total: -61.64 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.76 Total: -3.07 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.48 kcal Total: -70.30 1.18 -69.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123810544.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.559 kcal (2) G-P(sol) polarization free energy of solvation -70.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds