Wall clock time and date at job start Tue Mar 31 2020 10:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35695 * 117.00091 * 2 1 4 4 N 1.32255 * 119.68850 * 359.72704 * 3 2 1 5 5 C 1.31942 * 121.65396 * 179.74829 * 4 3 2 6 6 C 1.38086 * 120.85583 * 0.53109 * 5 4 3 7 7 C 1.50695 * 120.35433 * 179.71887 * 6 5 4 8 8 N 1.46898 * 109.47114 * 270.02110 * 7 6 5 9 9 C 1.46906 * 110.99987 * 293.95272 * 8 7 6 10 10 C 1.46899 * 111.00235 * 170.00074 * 8 7 6 11 11 C 1.50697 * 109.47521 * 189.99648 * 10 8 7 12 12 H 1.08001 * 119.99866 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00033 * 179.97438 * 11 10 8 14 14 N 1.31509 * 119.99924 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47054 * 90.00039 * 15 13 11 17 17 H 1.48496 * 109.47091 * 210.00419 * 15 13 11 18 18 H 1.48506 * 109.46785 * 330.00294 * 15 13 11 19 19 C 1.38781 * 119.29254 * 359.73539 * 6 5 4 20 20 C 1.38492 * 118.47744 * 0.02562 * 19 6 5 21 21 Br 1.89098 * 120.45087 * 180.02562 * 20 19 6 22 22 H 1.09004 * 109.47453 * 59.99450 * 1 2 3 23 23 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47255 * 299.99767 * 1 2 3 25 25 H 1.08002 * 119.57339 * 180.24294 * 5 4 3 26 26 H 1.08999 * 109.47052 * 30.01887 * 7 6 5 27 27 H 1.08998 * 109.47308 * 150.01924 * 7 6 5 28 28 H 1.08997 * 109.46980 * 59.99890 * 9 8 7 29 29 H 1.08999 * 109.47446 * 179.97438 * 9 8 7 30 30 H 1.09004 * 109.47027 * 300.00495 * 9 8 7 31 31 H 1.09004 * 109.47194 * 310.00122 * 10 8 7 32 32 H 1.09007 * 109.47130 * 69.99595 * 10 8 7 33 33 H 0.97007 * 119.99347 * 180.02562 * 14 13 11 34 34 H 1.07994 * 120.76232 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 7 1.3187 2.3143 -0.0055 5 6 1.8770 3.5098 -0.0008 6 6 3.2507 3.6498 -0.0008 7 6 3.8764 5.0207 -0.0018 8 7 4.0793 5.4654 -1.3871 9 6 5.0742 4.6267 -2.0689 10 6 4.4642 6.8823 -1.4342 11 6 4.4244 7.3666 -2.8607 12 1 4.1410 6.6896 -3.6530 13 6 4.7487 8.6742 -3.1541 14 7 5.0933 9.4986 -2.1892 15 14 4.6986 9.2746 -4.9223 16 1 3.3447 9.8029 -5.2274 17 1 5.7037 10.3518 -5.1079 18 1 5.0075 8.1463 -5.8371 19 6 4.0490 2.5146 -0.0004 20 6 3.4331 1.2742 -0.0004 21 35 4.4669 -0.3092 0.0010 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.2515 4.3902 -0.0015 26 1 3.2178 5.7211 0.5118 27 1 4.8371 4.9821 0.5118 28 1 4.7307 3.5924 -2.0806 29 1 5.2048 4.9774 -3.0926 30 1 6.0250 4.6877 -1.5393 31 1 3.7694 7.4678 -0.8321 32 1 5.4737 6.9979 -1.0393 33 1 5.3210 10.4186 -2.3957 34 1 5.1259 2.5965 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140161488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:55 Heat of formation + Delta-G solvation = 8.146488 kcal Electronic energy + Delta-G solvation = -17983.098107 eV Core-core repulsion = 14963.035062 eV Total energy + Delta-G solvation = -3020.063046 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77736 -38.33622 -36.44954 -33.26581 -32.81729 -31.54219 -29.60113 -27.90229 -27.19859 -26.33207 -24.08264 -23.30515 -21.78769 -20.26317 -18.52350 -17.33029 -16.45318 -16.19947 -15.20733 -14.80803 -14.62688 -14.57251 -14.29971 -13.86752 -13.45971 -13.38272 -12.91918 -12.15452 -11.99169 -11.85800 -11.43928 -11.40359 -11.32703 -11.06876 -10.93957 -10.68090 -10.53949 -10.37804 -9.94791 -9.68923 -9.53877 -9.26940 -8.48818 -8.36411 -7.35454 -6.07004 -4.08428 0.88028 1.16011 1.52406 2.89603 3.30235 3.36372 3.39847 3.58222 4.26964 4.39925 4.65598 4.91647 4.98051 5.07153 5.15353 5.18140 5.19800 5.29744 5.47628 5.66062 5.78650 5.97034 6.10340 6.18741 6.29949 6.33002 6.69077 7.02138 7.19153 7.25898 7.68722 7.73794 7.99233 8.10670 8.46425 8.98991 9.56129 11.03808 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.003357 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.782606 B = 8339.154202 C = 8870.126245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.298 6.298 3 C 0.337 3.663 4 N -0.531 5.531 5 C 0.173 3.827 6 C -0.142 4.142 7 C 0.097 3.903 8 N -0.535 5.535 9 C 0.034 3.966 10 C 0.193 3.807 11 C -0.508 4.508 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.009 4.009 20 C -0.167 4.167 21 Br -0.033 7.033 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.170 0.830 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.013 0.987 31 H 0.032 0.968 32 H -0.007 1.007 33 H 0.262 0.738 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -19.743 7.341 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.205 6.205 3 C 0.156 3.844 4 N -0.254 5.254 5 C 0.016 3.984 6 C -0.145 4.145 7 C -0.032 4.032 8 N -0.260 5.260 9 C -0.115 4.115 10 C 0.068 3.932 11 C -0.547 4.547 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.037 4.037 20 C -0.249 4.249 21 Br 0.051 6.949 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.187 0.813 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.011 0.989 33 H 0.071 0.929 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.299 -20.540 7.114 22.373 hybrid contribution 1.200 1.093 -0.543 1.712 sum -4.099 -19.446 6.571 20.932 Atomic orbital electron populations 1.22884 0.77068 1.02936 1.02660 1.86305 1.22921 1.23816 1.87448 1.19371 0.87779 0.85503 0.91768 1.67523 1.39612 0.98517 1.19755 1.22533 0.92606 0.93403 0.89828 1.20877 0.94506 0.96422 1.02735 1.20922 0.98834 0.90711 0.92712 1.62183 1.46483 1.06127 1.11169 1.22286 0.92391 0.96069 1.00709 1.19768 0.94484 0.80924 0.98025 1.21141 1.45231 0.95599 0.92714 0.91840 1.24976 0.95342 0.96739 0.97466 1.69953 1.46512 1.05540 1.31798 0.86498 0.77787 0.78438 0.84698 1.20591 1.21306 1.19857 1.21394 1.00977 0.89270 0.92029 1.21638 0.91798 0.93976 1.17479 1.96669 1.69107 1.31242 1.97895 0.92086 0.88591 0.92211 0.81317 0.89758 0.94468 0.93741 0.90499 0.96873 0.95013 0.98924 0.92878 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.42 16 2 O -0.30 -3.82 9.83 -18.79 -0.18 -4.01 16 3 C 0.34 4.76 7.48 -17.10 -0.13 4.63 16 4 N -0.53 -7.56 9.22 -13.31 -0.12 -7.68 16 5 C 0.17 2.41 10.85 -17.56 -0.19 2.22 16 6 C -0.14 -2.04 4.89 -104.48 -0.51 -2.55 16 7 C 0.10 1.58 5.14 -4.98 -0.03 1.55 16 8 N -0.54 -10.87 4.74 -245.82 -1.17 -12.04 16 9 C 0.03 0.64 8.98 60.07 0.54 1.18 16 10 C 0.19 4.79 4.72 -4.98 -0.02 4.76 16 11 C -0.51 -13.89 8.46 -34.44 -0.29 -14.18 16 12 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 C -0.01 -0.12 7.90 -39.29 -0.31 -0.43 16 20 C -0.17 -2.29 6.26 -39.22 -0.25 -2.53 16 21 Br -0.03 -0.41 33.20 -68.01 -2.26 -2.66 16 22 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 23 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 25 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.08 1.31 7.88 -51.93 -0.41 0.90 16 27 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 28 H 0.04 0.74 6.17 -51.93 -0.32 0.42 16 29 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 32 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -29.71 310.64 -7.94 -37.65 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.38 Total: -4.40 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.23 Total: -2.47 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.55 Total: -45.08 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.18 Total: -4.01 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.26 Total: -2.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.71 -7.94 -37.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140161488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.800 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds