Wall clock time and date at job start Tue Mar 31 2020 10:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35695 * 117.00091 * 2 1 4 4 N 1.32255 * 119.68850 * 359.72704 * 3 2 1 5 5 C 1.31942 * 121.65396 * 179.74829 * 4 3 2 6 6 C 1.38086 * 120.85583 * 0.53109 * 5 4 3 7 7 C 1.50695 * 120.35433 * 179.71887 * 6 5 4 8 8 N 1.46898 * 109.47114 * 270.02110 * 7 6 5 9 9 C 1.46906 * 110.99987 * 293.95272 * 8 7 6 10 10 C 1.46899 * 111.00235 * 170.00074 * 8 7 6 11 11 C 1.50697 * 109.47521 * 189.99648 * 10 8 7 12 12 H 1.08001 * 119.99866 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00033 * 179.97438 * 11 10 8 14 14 N 1.31509 * 119.99924 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47054 * 90.00039 * 15 13 11 17 17 H 1.48496 * 109.47091 * 210.00419 * 15 13 11 18 18 H 1.48506 * 109.46785 * 330.00294 * 15 13 11 19 19 C 1.38781 * 119.29254 * 359.73539 * 6 5 4 20 20 C 1.38492 * 118.47744 * 0.02562 * 19 6 5 21 21 Br 1.89098 * 120.45087 * 180.02562 * 20 19 6 22 22 H 1.09004 * 109.47453 * 59.99450 * 1 2 3 23 23 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47255 * 299.99767 * 1 2 3 25 25 H 1.08002 * 119.57339 * 180.24294 * 5 4 3 26 26 H 1.08999 * 109.47052 * 30.01887 * 7 6 5 27 27 H 1.08998 * 109.47308 * 150.01924 * 7 6 5 28 28 H 1.08997 * 109.46980 * 59.99890 * 9 8 7 29 29 H 1.08999 * 109.47446 * 179.97438 * 9 8 7 30 30 H 1.09004 * 109.47027 * 300.00495 * 9 8 7 31 31 H 1.09004 * 109.47194 * 310.00122 * 10 8 7 32 32 H 1.09007 * 109.47130 * 69.99595 * 10 8 7 33 33 H 0.97007 * 119.99347 * 180.02562 * 14 13 11 34 34 H 1.07994 * 120.76232 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 7 1.3187 2.3143 -0.0055 5 6 1.8770 3.5098 -0.0008 6 6 3.2507 3.6498 -0.0008 7 6 3.8764 5.0207 -0.0018 8 7 4.0793 5.4654 -1.3871 9 6 5.0742 4.6267 -2.0689 10 6 4.4642 6.8823 -1.4342 11 6 4.4244 7.3666 -2.8607 12 1 4.1410 6.6896 -3.6530 13 6 4.7487 8.6742 -3.1541 14 7 5.0933 9.4986 -2.1892 15 14 4.6986 9.2746 -4.9223 16 1 3.3447 9.8029 -5.2274 17 1 5.7037 10.3518 -5.1079 18 1 5.0075 8.1463 -5.8371 19 6 4.0490 2.5146 -0.0004 20 6 3.4331 1.2742 -0.0004 21 35 4.4669 -0.3092 0.0010 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.2515 4.3902 -0.0015 26 1 3.2178 5.7211 0.5118 27 1 4.8371 4.9821 0.5118 28 1 4.7307 3.5924 -2.0806 29 1 5.2048 4.9774 -3.0926 30 1 6.0250 4.6877 -1.5393 31 1 3.7694 7.4678 -0.8321 32 1 5.4737 6.9979 -1.0393 33 1 5.3210 10.4186 -2.3957 34 1 5.1259 2.5965 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140161488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:54 Heat of formation + Delta-G solvation = -12.198822 kcal Electronic energy + Delta-G solvation = -17983.980346 eV Core-core repulsion = 14963.035062 eV Total energy + Delta-G solvation = -3020.945285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83390 -39.42187 -37.93977 -34.82971 -34.24207 -32.89777 -30.63942 -29.26121 -28.74976 -27.56602 -25.71547 -24.37174 -23.23045 -21.80427 -19.50886 -18.51798 -18.36963 -17.18323 -16.84150 -16.23182 -16.04256 -15.75552 -15.58035 -15.20677 -14.78463 -14.49368 -14.22836 -13.83659 -13.41653 -13.10681 -12.91467 -12.76616 -12.63066 -12.49460 -12.38874 -12.25561 -12.10667 -11.83803 -11.37440 -11.32431 -10.73500 -10.63732 -10.56095 -9.45876 -9.00380 -8.18256 -6.27309 -0.18600 0.06378 0.49994 1.43513 1.44050 1.54899 1.96309 2.40575 2.49583 3.15013 3.24576 3.42845 3.64512 3.85215 3.98492 3.99522 4.43756 4.44358 4.48608 4.57890 4.59384 4.71752 4.75148 4.79554 5.06106 5.13774 5.22043 5.24001 5.33597 5.66874 6.04296 6.06961 6.30888 6.60426 6.63168 6.88481 7.42225 8.92377 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.003357 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.782606 B = 8339.154202 C = 8870.126245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.306 6.306 3 C 0.332 3.668 4 N -0.537 5.537 5 C 0.172 3.828 6 C -0.150 4.150 7 C 0.101 3.899 8 N -0.543 5.543 9 C 0.040 3.960 10 C 0.207 3.793 11 C -0.523 4.523 12 H 0.060 0.940 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.005 4.005 20 C -0.177 4.177 21 Br -0.019 7.019 22 H 0.057 0.943 23 H 0.126 0.874 24 H 0.061 0.939 25 H 0.181 0.819 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.012 0.988 32 H -0.032 1.032 33 H 0.264 0.736 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -21.036 6.873 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.151 3.849 4 N -0.261 5.261 5 C 0.015 3.985 6 C -0.153 4.153 7 C -0.027 4.027 8 N -0.267 5.267 9 C -0.109 4.109 10 C 0.081 3.919 11 C -0.561 4.561 12 H 0.079 0.921 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.032 4.032 20 C -0.259 4.259 21 Br 0.065 6.935 22 H 0.075 0.925 23 H 0.144 0.856 24 H 0.079 0.921 25 H 0.198 0.802 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.030 0.970 32 H -0.015 1.015 33 H 0.073 0.927 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.752 -21.867 6.651 23.569 hybrid contribution 1.293 1.371 -0.337 1.914 sum -4.459 -20.496 6.315 21.905 Atomic orbital electron populations 1.23137 0.75362 1.04948 1.02524 1.86306 1.24639 1.23168 1.87079 1.19607 0.88192 0.85896 0.91204 1.67567 1.39746 0.98603 1.20222 1.22738 0.92669 0.93842 0.89202 1.20637 0.94762 0.95488 1.04431 1.20888 0.99474 0.91922 0.90394 1.62057 1.46641 1.04002 1.14011 1.22225 0.92516 0.96789 0.99329 1.19414 0.92461 0.83616 0.96389 1.21461 1.44946 0.95884 0.93804 0.92135 1.25820 0.94911 0.96957 1.01632 1.70067 1.47431 1.05909 1.33920 0.85461 0.77954 0.77981 0.79696 1.19951 1.20870 1.19095 1.21511 1.01518 0.89007 0.91208 1.21769 0.92046 0.94601 1.17487 1.96676 1.68601 1.30336 1.97859 0.92467 0.85579 0.92059 0.80209 0.89416 0.93783 0.91389 0.92613 0.96330 0.96952 1.01469 0.92714 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.38 113.37 1.18 1.76 16 2 O -0.31 -7.27 9.83 -90.14 -0.89 -8.15 16 3 C 0.33 8.85 7.48 84.80 0.63 9.49 16 4 N -0.54 -14.56 9.22 -308.87 -2.85 -17.40 16 5 C 0.17 4.58 10.85 84.64 0.92 5.50 16 6 C -0.15 -4.12 4.89 -19.77 -0.10 -4.21 16 7 C 0.10 3.23 5.14 85.56 0.44 3.67 16 8 N -0.54 -21.93 4.74 -931.64 -4.42 -26.35 16 9 C 0.04 1.47 8.98 127.69 1.15 2.61 16 10 C 0.21 10.49 4.72 85.56 0.40 10.89 16 11 C -0.52 -28.80 8.46 25.60 0.22 -28.58 16 12 H 0.06 3.30 7.12 -2.91 -0.02 3.28 16 13 C 0.00 0.28 5.46 84.66 0.46 0.74 16 14 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 15 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 C 0.00 -0.13 7.90 22.46 0.18 0.05 16 20 C -0.18 -4.55 6.26 22.50 0.14 -4.41 16 21 Br -0.02 -0.43 33.20 -20.37 -0.68 -1.10 16 22 H 0.06 1.02 8.10 -2.38 -0.02 1.00 16 23 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.06 1.02 8.11 -2.39 -0.02 1.00 16 25 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 26 H 0.09 2.70 7.88 -2.39 -0.02 2.69 16 27 H 0.04 1.35 8.07 -2.39 -0.02 1.33 16 28 H 0.07 2.17 6.17 -2.39 -0.01 2.15 16 29 H 0.06 2.28 6.76 -2.39 -0.02 2.26 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.01 0.67 7.93 -2.38 -0.02 0.65 16 32 H -0.03 -1.77 8.12 -2.38 -0.02 -1.79 16 33 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 34 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -62.54 310.64 0.20 -62.34 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: 1.10 Total: 2.06 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.62 Total: -2.49 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -6.98 Total: -98.25 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.89 Total: -8.15 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -0.68 Total: -1.10 kcal Total: -62.54 0.20 -62.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140161488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.138 kcal (2) G-P(sol) polarization free energy of solvation -62.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds