Wall clock time and date at job start Tue Mar 31 2020 10:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46983 * 333.69408 * 3 2 1 5 5 N 1.46894 * 109.47057 * 173.96959 * 4 3 2 6 6 C 1.46903 * 111.00046 * 71.60300 * 5 4 3 7 7 C 1.50695 * 109.47220 * 283.77120 * 6 5 4 8 8 H 1.08003 * 119.99959 * 357.63114 * 7 6 5 9 9 C 1.37876 * 120.00060 * 177.63338 * 7 6 5 10 10 N 1.31512 * 119.99886 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99844 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47160 * 90.00214 * 11 9 7 13 13 H 1.48500 * 109.46732 * 209.99944 * 11 9 7 14 14 H 1.48494 * 109.47257 * 329.99846 * 11 9 7 15 15 C 1.46902 * 111.00036 * 195.55733 * 5 4 3 16 16 C 1.50695 * 109.47110 * 66.04543 * 15 5 4 17 17 N 1.32135 * 119.98738 * 90.00114 * 16 15 5 18 18 C 1.32112 * 120.03211 * 179.97438 * 17 16 15 19 19 C 1.38530 * 120.01223 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.01043 * 179.97438 * 19 18 17 21 21 N 1.32238 * 119.98120 * 359.97438 * 19 18 17 22 22 C 1.32270 * 119.96887 * 359.97438 * 21 19 18 23 23 Cl 1.73602 * 120.00629 * 180.02562 * 22 21 19 24 24 H 1.09003 * 109.46905 * 213.69827 * 3 2 1 25 25 H 1.08994 * 109.47215 * 93.69082 * 3 2 1 26 26 H 1.09007 * 109.46706 * 53.96989 * 4 3 2 27 27 H 1.09005 * 109.47192 * 293.97272 * 4 3 2 28 28 H 1.09007 * 109.46773 * 43.76860 * 6 5 4 29 29 H 1.08993 * 109.47430 * 163.76604 * 6 5 4 30 30 H 0.97004 * 119.99421 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.46986 * 306.04321 * 15 5 4 32 32 H 1.09004 * 109.47148 * 186.04890 * 15 5 4 33 33 H 1.07997 * 119.99563 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2923 0.6393 5 7 4.5803 -1.3584 0.5100 6 6 5.2319 -0.3866 1.3983 7 6 5.1060 0.9950 0.8100 8 1 4.6269 1.1323 -0.1482 9 6 5.6024 2.0838 1.4949 10 7 6.1853 1.9166 2.6618 11 14 5.4469 3.7964 0.7651 12 1 4.1709 4.4108 1.2117 13 1 6.5855 4.6338 1.2208 14 1 5.4609 3.7061 -0.7170 15 6 5.0706 -2.7189 0.7681 16 6 4.5730 -3.6454 -0.3112 17 7 5.2912 -3.8317 -1.4046 18 6 4.8560 -4.6441 -2.3511 19 6 3.6459 -5.3009 -2.1981 20 17 3.0738 -6.3679 -3.4422 21 7 2.9267 -5.1148 -1.1041 22 6 3.3636 -4.3021 -0.1565 23 17 2.4206 -4.0576 1.2804 24 1 2.9709 0.8558 0.5702 25 1 2.9713 0.0670 -1.0255 26 1 2.6701 -2.1485 0.1353 27 1 2.8460 -1.3081 1.6946 28 1 4.7519 -0.4100 2.3768 29 1 6.2862 -0.6416 1.5047 30 1 6.5349 2.6827 3.1434 31 1 4.7044 -3.0595 1.7366 32 1 6.1607 -2.7177 0.7718 33 1 5.4437 -4.7962 -3.2443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141138745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:10 Heat of formation + Delta-G solvation = 60.515340 kcal Electronic energy + Delta-G solvation = -21157.502511 eV Core-core repulsion = 17691.306857 eV Total energy + Delta-G solvation = -3466.195655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.040 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.54106 -39.21410 -38.13590 -37.95097 -37.39932 -35.70123 -34.64769 -33.30319 -31.87891 -29.42978 -27.30628 -26.16171 -24.93336 -24.03918 -21.85857 -19.51193 -19.19040 -18.85470 -17.78088 -17.19189 -17.09193 -16.53533 -16.27458 -15.94006 -15.70469 -15.32208 -14.79944 -14.36469 -13.94331 -13.78999 -13.77955 -13.62682 -13.39646 -13.16637 -13.06819 -12.88158 -12.69628 -12.49747 -12.44440 -12.35256 -12.19987 -12.00933 -11.90525 -11.33392 -11.11071 -10.54753 -10.44027 -10.20928 -9.10480 -8.06636 -6.11445 -0.80451 -0.39637 0.15261 0.60578 1.51645 1.55677 1.63008 1.74765 1.82544 2.10310 2.50696 2.71572 2.86560 2.96874 3.18744 3.28477 3.51109 3.65224 3.88156 4.14297 4.25931 4.48134 4.58083 4.61868 4.79558 5.02090 5.20055 5.33749 5.36399 5.61650 5.80579 6.14229 6.23894 6.30176 6.54229 6.61144 7.01948 7.55468 9.03559 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.004077 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.349358 B = 6866.544892 C = 7282.797802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.238 3.762 3 C -0.031 4.031 4 C 0.069 3.931 5 N -0.523 5.523 6 C 0.204 3.796 7 C -0.510 4.510 8 H 0.086 0.914 9 C 0.012 3.988 10 N -0.931 5.931 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.294 1.294 14 H -0.260 1.260 15 C 0.099 3.901 16 C 0.124 3.876 17 N -0.401 5.401 18 C 0.096 3.904 19 C 0.129 3.871 20 Cl 0.013 6.987 21 N -0.444 5.444 22 C 0.130 3.870 23 Cl 0.002 6.998 24 H 0.133 0.867 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.038 0.962 28 H -0.017 1.017 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -15.172 -9.183 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.078 4.078 3 C -0.071 4.071 4 C -0.061 4.061 5 N -0.247 5.247 6 C 0.079 3.921 7 C -0.548 4.548 8 H 0.104 0.896 9 C -0.187 4.187 10 N -0.572 5.572 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.220 1.220 14 H -0.184 1.184 15 C -0.030 4.030 16 C -0.017 4.017 17 N -0.116 5.116 18 C -0.066 4.066 19 C -0.040 4.040 20 Cl 0.041 6.959 21 N -0.163 5.163 22 C -0.037 4.037 23 Cl 0.031 6.969 24 H 0.151 0.849 25 H 0.141 0.859 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.001 0.999 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.109 -15.013 -9.485 18.028 hybrid contribution -0.050 0.616 0.948 1.131 sum -3.159 -14.397 -8.537 17.033 Atomic orbital electron populations 1.81135 1.14159 1.10814 1.11250 1.29795 0.95589 0.91302 0.91154 1.19896 0.78659 1.02451 1.06065 1.22127 0.88904 0.96154 0.98909 1.62007 1.04100 1.02919 1.55705 1.19575 0.93306 0.90031 0.89182 1.21634 1.36682 0.90954 1.05571 0.89600 1.25663 0.95308 1.02539 0.95183 1.70058 1.40310 1.31670 1.15144 0.85721 0.77222 0.80311 0.79481 1.20499 1.22037 1.18357 1.21022 1.02123 0.87346 0.92483 1.22084 0.89599 0.94951 0.95083 1.68687 1.31065 1.12235 0.99586 1.24459 0.92513 0.90016 0.99651 1.23105 0.93033 0.96722 0.91135 1.98447 1.89365 1.61796 1.46276 1.67063 1.33815 1.14814 1.00644 1.22592 0.92389 0.96946 0.91786 1.98445 1.72126 1.94358 1.31981 0.84930 0.85873 0.91270 0.94410 0.99901 0.96683 0.93091 0.91492 0.87740 0.75739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.14 18.54 20.01 0.37 -17.77 16 2 C 0.24 7.86 15.43 89.44 1.38 9.24 16 3 C -0.03 -0.97 4.40 28.79 0.13 -0.84 16 4 C 0.07 2.19 3.57 86.31 0.31 2.49 16 5 N -0.52 -18.06 4.47 -905.36 -4.05 -22.11 16 6 C 0.20 8.86 4.76 85.55 0.41 9.27 16 7 C -0.51 -23.71 6.93 25.60 0.18 -23.53 16 8 H 0.09 3.72 5.89 -2.91 -0.02 3.71 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.93 -50.50 13.29 21.45 0.28 -50.22 16 11 Si 0.95 39.81 29.54 68.60 2.03 41.83 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 15 C 0.10 2.91 5.06 85.55 0.43 3.34 16 16 C 0.12 3.32 5.84 42.57 0.25 3.57 16 17 N -0.40 -9.93 10.42 -183.11 -1.91 -11.83 16 18 C 0.10 1.77 11.01 84.72 0.93 2.70 16 19 C 0.13 2.66 7.29 84.70 0.62 3.28 16 20 Cl 0.01 0.21 29.13 -2.72 -0.08 0.13 16 21 N -0.44 -11.37 10.47 -177.04 -1.85 -13.23 16 22 C 0.13 3.43 6.18 84.68 0.52 3.96 16 23 Cl 0.00 0.06 24.50 -2.72 -0.07 0.00 16 24 H 0.13 4.72 5.48 -2.39 -0.01 4.71 16 25 H 0.12 3.55 7.93 -2.39 -0.02 3.53 16 26 H 0.07 2.06 4.18 -2.38 -0.01 2.05 16 27 H 0.04 1.25 7.71 -2.38 -0.02 1.23 16 28 H -0.02 -0.80 7.78 -2.38 -0.02 -0.82 16 29 H 0.02 0.71 7.72 -2.39 -0.02 0.69 16 30 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 31 H 0.07 1.86 6.88 -2.39 -0.02 1.84 16 32 H 0.10 3.08 7.83 -2.38 -0.02 3.06 16 33 H 0.23 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -57.64 315.35 1.52 -56.12 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.18 Total: 2.54 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.62 Total: 14.53 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -7.15 Total: -115.15 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.15 Total: 0.13 kcal Total: -57.64 1.52 -56.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141138745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.636 kcal (2) G-P(sol) polarization free energy of solvation -57.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds