Wall clock time and date at job start Tue Mar 31 2020 10:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99833 * 2 1 4 4 H 1.48507 * 109.46829 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46845 * 299.99779 * 3 2 1 6 6 H 1.48490 * 109.47165 * 59.99780 * 3 2 1 7 7 C 1.37883 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99574 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47230 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.37217 * 119.99881 * 180.02562 * 12 11 10 14 14 N 1.33620 * 120.42334 * 0.02562 * 13 12 11 15 15 C 1.31014 * 121.94546 * 179.97438 * 14 13 12 16 16 Cl 1.73594 * 118.73870 * 179.97438 * 15 14 13 17 17 N 1.34451 * 122.52947 * 359.59815 * 15 14 13 18 18 H 0.97003 * 120.13721 * 179.97438 * 17 15 14 19 19 C 1.38218 * 119.72601 * 0.63678 * 17 15 14 20 20 N 1.31856 * 134.51759 * 179.22223 * 19 17 15 21 21 C 1.33574 * 110.58975 * 180.02562 * 20 19 17 22 22 C 1.36055 * 109.67951 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 126.84875 * 179.97438 * 22 21 20 24 24 C 1.40339 * 120.42281 * 180.02562 * 13 12 11 25 25 H 0.97000 * 119.99978 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46853 * 59.99959 * 9 7 2 27 27 H 1.08996 * 109.47594 * 300.00313 * 9 7 2 28 28 H 1.09006 * 109.47005 * 60.00410 * 10 9 7 29 29 H 1.08992 * 109.47598 * 300.00287 * 10 9 7 30 30 H 1.09002 * 109.46991 * 60.00744 * 11 10 9 31 31 H 1.09000 * 109.46896 * 300.00323 * 11 10 9 32 32 H 0.97006 * 120.00138 * 359.97438 * 12 11 10 33 33 H 1.08000 * 125.15876 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4323 -6.1006 0.0024 13 6 1.9749 -7.3943 0.0024 14 7 0.6631 -7.6482 0.0015 15 6 0.1937 -8.8714 0.0009 16 17 -1.5264 -9.1053 0.0005 17 7 0.9930 -9.9525 -0.0067 18 1 0.6080 -10.8428 -0.0065 19 6 2.3656 -9.7900 -0.0011 20 7 3.3941 -10.6150 0.0071 21 6 4.5429 -9.9336 0.0101 22 6 4.2834 -8.5980 0.0032 23 17 5.4485 -7.3111 0.0044 24 6 2.8790 -8.4677 0.0033 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5574 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8726 -3.6039 0.8910 29 1 2.8713 -3.6047 -0.8889 30 1 0.8533 -5.0450 -0.8878 31 1 0.8540 -5.0447 0.8922 32 1 3.3860 -5.9234 0.0019 33 1 5.5283 -10.3757 0.0162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:29 Heat of formation + Delta-G solvation = 54.151738 kcal Electronic energy + Delta-G solvation = -20390.246166 eV Core-core repulsion = 16923.774565 eV Total energy + Delta-G solvation = -3466.471601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.040 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.12887 -40.09820 -39.03747 -38.14043 -37.32127 -36.16981 -34.83954 -33.20321 -31.08500 -29.69856 -28.39693 -25.64657 -25.21532 -23.61798 -22.36659 -21.98983 -19.75247 -19.33550 -18.86933 -18.41612 -17.46973 -17.37077 -16.56050 -16.34160 -16.23301 -15.78717 -14.84621 -14.55786 -14.43333 -14.36084 -14.21124 -13.74131 -13.24427 -13.07888 -13.00510 -12.73570 -12.63777 -12.40530 -12.37586 -12.30528 -11.69543 -11.66989 -11.43641 -11.20779 -10.70534 -10.61808 -10.55321 -9.52726 -8.68772 -8.20316 -6.30387 -1.00955 -0.51810 0.26055 1.26844 1.34988 1.40641 1.42059 1.53944 1.71292 2.02621 2.30184 2.41441 2.97162 3.14060 3.31341 3.68622 3.91136 3.99356 4.14058 4.18089 4.48622 4.80549 4.87517 4.93030 5.10318 5.27441 5.28642 5.49573 5.52044 5.69483 5.69941 5.83643 5.92177 6.23064 6.40835 6.84618 6.86057 7.38904 8.91424 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.003369 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.202346 B = 8308.996069 C =10308.444162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.029 3.971 10 C -0.112 4.112 11 C 0.123 3.877 12 N -0.658 5.658 13 C 0.531 3.469 14 N -0.572 5.572 15 C 0.481 3.519 16 Cl 0.092 6.908 17 N -0.525 5.525 18 H 0.444 0.556 19 C 0.253 3.747 20 N -0.519 5.519 21 C 0.035 3.965 22 C -0.131 4.131 23 Cl -0.058 7.058 24 C -0.297 4.297 25 H 0.264 0.736 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.422 0.578 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -22.232 0.005 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.150 4.150 11 C 0.000 4.000 12 N -0.279 5.279 13 C 0.286 3.714 14 N -0.305 5.305 15 C 0.188 3.812 16 Cl 0.120 6.880 17 N -0.142 5.142 18 H 0.287 0.713 19 C 0.010 3.990 20 N -0.239 5.239 21 C -0.113 4.113 22 C -0.164 4.164 23 Cl -0.030 7.030 24 C -0.313 4.313 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.263 0.737 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.486 -22.110 0.002 22.115 hybrid contribution 0.924 1.173 0.000 1.494 sum 0.438 -20.936 0.002 20.941 Atomic orbital electron populations 1.70081 1.07602 1.27696 1.51575 1.25898 0.95727 1.03105 0.94808 0.85467 0.79112 0.79166 0.77720 1.18752 1.20501 1.20490 1.21685 0.93574 0.92287 1.50559 0.92188 1.18882 0.94134 0.92034 0.95778 1.21689 0.98889 0.92558 1.01819 1.21744 0.91252 0.83611 1.03355 1.45219 1.11579 1.02382 1.68727 1.18113 0.87053 0.85394 0.80793 1.67372 1.13439 1.18274 1.31449 1.22663 0.88475 0.82309 0.87752 1.98565 0.98367 1.95773 1.95293 1.41473 1.03105 1.10949 1.58718 0.71289 1.18230 0.83596 0.90252 1.06947 1.69566 0.96016 1.33301 1.24989 1.22404 0.96638 0.88270 1.03965 1.20823 0.87335 0.90663 1.17620 1.98297 1.57451 1.49641 1.97594 1.18811 0.94234 0.92835 1.25387 0.92756 0.98094 0.98088 0.91945 0.91951 0.90277 0.90282 0.73705 0.79772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 43.11 29.54 68.60 2.03 45.13 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.44 4.97 29.84 0.15 1.59 16 10 C -0.11 -4.11 5.27 30.60 0.16 -3.95 16 11 C 0.12 3.78 5.69 86.38 0.49 4.27 16 12 N -0.66 -18.46 5.64 -344.59 -1.94 -20.40 16 13 C 0.53 14.53 7.52 133.59 1.00 15.53 16 14 N -0.57 -13.86 9.53 -187.12 -1.78 -15.64 16 15 C 0.48 8.54 8.23 180.30 1.48 10.02 16 16 Cl 0.09 1.06 29.18 -2.72 -0.08 0.98 16 17 N -0.53 -8.81 5.38 -186.47 -1.00 -9.81 16 18 H 0.44 4.16 8.84 -92.71 -0.82 3.34 16 19 C 0.25 6.40 8.52 134.17 1.14 7.55 16 20 N -0.52 -14.30 11.19 -192.43 -2.15 -16.45 16 21 C 0.03 0.92 11.79 83.92 0.99 1.91 16 22 C -0.13 -3.65 6.80 22.45 0.15 -3.49 16 23 Cl -0.06 -1.49 27.38 -2.72 -0.07 -1.56 16 24 C -0.30 -8.33 6.18 -21.19 -0.13 -8.46 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.00 0.03 8.14 -2.38 -0.02 0.02 16 27 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.42 11.59 6.37 -92.70 -0.59 11.00 16 33 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -66.26 320.14 1.19 -65.07 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.22 Total: 10.75 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 6.14 Total: -3.73 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -6.60 Total: -116.65 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.15 Total: -0.58 kcal Total: -66.26 1.19 -65.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.225 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds