Wall clock time and date at job start Tue Mar 31 2020 10:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86802 * 119.99704 * 2 1 4 4 H 1.48505 * 109.46742 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47289 * 299.99574 * 3 2 1 6 6 H 1.48498 * 109.47269 * 60.00390 * 3 2 1 7 7 C 1.40308 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99968 * 175.09110 * 7 2 1 9 9 C 1.40497 * 120.00154 * 355.09944 * 7 2 1 10 10 C 1.44203 * 123.72353 * 34.80990 * 9 7 2 11 11 C 1.32748 * 114.43764 * 180.31864 * 10 9 7 12 12 S 1.75474 * 111.36819 * 359.73280 * 11 10 9 13 13 C 1.39586 * 123.72009 * 214.63381 * 9 7 2 14 14 C 1.46166 * 125.23248 * 359.96587 * 13 9 7 15 15 O 1.21786 * 119.99664 * 359.73122 * 14 13 9 16 16 N 1.34779 * 120.00117 * 179.72120 * 14 13 9 17 17 C 1.39763 * 119.99903 * 174.36122 * 16 14 13 18 18 C 1.38444 * 120.25663 * 335.21040 * 17 16 14 19 19 C 1.38788 * 120.47094 * 180.02562 * 18 17 16 20 20 C 1.36566 * 120.77815 * 0.02562 * 19 18 17 21 21 C 1.39797 * 119.93515 * 359.97438 * 20 19 18 22 22 N 1.34843 * 134.75551 * 180.02562 * 21 20 19 23 23 N 1.28681 * 109.23436 * 179.19816 * 22 21 20 24 24 N 1.28827 * 111.71358 * 0.75017 * 23 22 21 25 25 H 0.97003 * 125.92265 * 179.34537 * 24 23 22 26 26 C 1.37255 * 108.14717 * 359.37082 * 24 23 22 27 27 H 0.97011 * 120.00187 * 359.97438 * 1 2 3 28 28 H 1.08001 * 122.77963 * 0.05399 * 10 9 7 29 29 H 1.07995 * 124.31743 * 179.76242 * 11 10 9 30 30 H 0.97002 * 119.99968 * 354.36819 * 16 14 13 31 31 H 1.07995 * 119.76250 * 0.02735 * 18 17 16 32 32 H 1.08003 * 119.60258 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.03347 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0079 -1.2151 0.0005 8 1 3.0850 -1.2169 -0.0795 9 6 1.3093 -2.4296 0.1050 10 6 0.0093 -2.6579 -0.4757 11 6 -0.4840 -3.8710 -0.2583 12 16 0.6240 -4.8522 0.6845 13 6 1.7986 -3.5495 0.7795 14 6 3.0876 -3.6247 1.4646 15 8 3.8309 -2.6600 1.4710 16 7 3.4534 -4.7616 2.0893 17 6 4.7319 -4.8746 2.6425 18 6 5.7747 -4.1076 2.1517 19 6 7.0461 -4.2167 2.6974 20 6 7.2934 -5.0804 3.7259 21 6 6.2586 -5.8668 4.2406 22 7 6.1639 -6.7893 5.2196 23 7 4.9485 -7.2053 5.2940 24 7 4.1961 -6.6387 4.4150 25 1 3.2498 -6.8059 4.2832 26 6 4.9661 -5.7579 3.6973 27 1 -0.4851 0.8401 0.0004 28 1 -0.5210 -1.9030 -1.0373 29 1 -1.4444 -4.2109 -0.6164 30 1 2.8294 -5.5013 2.1549 31 1 5.5975 -3.4195 1.3384 32 1 7.8493 -3.6113 2.3039 33 1 8.2874 -5.1553 4.1418 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158816756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:39 Heat of formation + Delta-G solvation = 100.828763 kcal Electronic energy + Delta-G solvation = -22452.112840 eV Core-core repulsion = 18992.141862 eV Total energy + Delta-G solvation = -3459.970978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.08626 -39.49621 -37.31433 -36.17855 -34.54712 -33.24072 -32.91291 -30.33230 -29.75860 -28.75110 -26.35095 -24.07297 -23.04149 -22.95066 -21.81835 -20.31429 -19.15128 -18.74300 -18.02905 -17.38671 -16.17477 -16.02388 -15.72871 -15.28533 -15.10017 -14.78279 -14.36530 -13.85133 -13.76862 -12.64985 -12.49574 -12.34591 -12.14645 -12.06263 -11.90569 -11.81139 -11.65649 -11.32114 -11.28042 -11.10549 -10.92278 -10.54892 -10.41585 -9.77738 -9.68817 -9.53569 -8.91076 -8.67834 -7.76668 -7.46129 -7.29791 -7.19122 -4.76966 0.76207 1.39059 1.88187 2.45076 2.56046 2.85500 2.86528 2.92515 3.01786 3.34719 3.50930 3.55670 3.72767 3.80731 4.15959 4.20475 4.83463 4.95064 4.96861 5.05922 5.39616 5.52996 5.82923 5.93208 6.11852 6.21315 6.46212 6.56895 6.67113 6.73942 6.78436 6.93698 6.98537 7.15777 7.24131 7.46963 7.95414 8.15762 8.33357 8.34200 8.46907 9.09076 9.72709 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.004335 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.700362 B = 6458.058337 C = 7853.779923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.067 3.933 3 Si 0.928 3.072 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.372 4.372 8 H 0.106 0.894 9 C 0.147 3.853 10 C -0.096 4.096 11 C -0.198 4.198 12 S -0.054 6.054 13 C -0.424 4.424 14 C 0.595 3.405 15 O -0.532 6.532 16 N -0.686 5.686 17 C 0.196 3.804 18 C -0.119 4.119 19 C -0.082 4.082 20 C -0.097 4.097 21 C 0.032 3.968 22 N -0.258 5.258 23 N -0.022 5.022 24 N -0.415 5.415 25 H 0.449 0.551 26 C -0.005 4.005 27 H 0.290 0.710 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.398 0.602 31 H 0.164 0.836 32 H 0.137 0.863 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 -5.217 1.232 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.155 4.155 3 Si 0.751 3.249 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.403 4.403 8 H 0.124 0.876 9 C 0.136 3.864 10 C -0.128 4.128 11 C -0.332 4.332 12 S 0.200 5.800 13 C -0.543 4.543 14 C 0.395 3.605 15 O -0.414 6.414 16 N -0.328 5.328 17 C 0.095 3.905 18 C -0.144 4.144 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.093 4.093 22 N -0.135 5.135 23 N -0.004 5.004 24 N -0.144 5.144 25 H 0.295 0.705 26 C -0.127 4.127 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.232 0.768 31 H 0.181 0.819 32 H 0.155 0.845 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.207 -6.821 2.867 8.511 hybrid contribution -1.156 2.236 -1.276 2.822 sum 3.051 -4.586 1.590 5.733 Atomic orbital electron populations 1.69619 1.08053 1.30594 1.32098 1.26350 0.95034 1.02594 0.91487 0.85896 0.81376 0.78865 0.78759 1.17432 1.19479 1.19397 1.19893 0.96668 0.88738 1.34959 0.87563 1.17959 0.89793 0.91662 0.87016 1.21746 0.96150 0.94976 0.99896 1.24948 1.02721 0.98768 1.06759 1.82717 1.14244 1.20355 1.62646 1.22546 1.02540 1.01263 1.27913 1.16930 0.85795 0.80456 0.77322 1.90667 1.53549 1.35480 1.61684 1.43659 1.12381 1.18525 1.58278 1.16782 0.86659 0.95891 0.91142 1.21521 0.90151 1.00724 1.01988 1.20745 0.96835 0.97357 0.95449 1.19867 0.97447 0.96651 0.98081 1.19741 0.93181 0.99607 0.96781 1.75319 1.08640 1.11854 1.17691 1.77896 0.97457 1.16108 1.08968 1.44690 1.12957 1.30879 1.25832 0.70475 1.19637 0.93137 1.00475 0.99456 0.89930 0.83594 0.84164 0.76780 0.81862 0.84543 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.72 10.99 55.57 0.61 -17.11 16 2 C 0.07 1.53 5.47 -17.28 -0.09 1.44 16 3 Si 0.93 17.57 29.57 -169.99 -5.03 12.54 16 4 H -0.25 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.37 -9.20 8.21 -37.95 -0.31 -9.51 16 8 H 0.11 2.71 6.53 -52.48 -0.34 2.37 16 9 C 0.15 3.59 5.61 -106.20 -0.60 3.00 16 10 C -0.10 -2.14 9.04 -39.12 -0.35 -2.49 16 11 C -0.20 -3.92 11.07 28.85 0.32 -3.60 16 12 S -0.05 -1.04 22.26 -107.50 -2.39 -3.44 16 13 C -0.42 -9.71 6.50 -35.90 -0.23 -9.94 16 14 C 0.60 13.07 7.56 -13.08 -0.10 12.97 16 15 O -0.53 -12.79 11.82 5.11 0.06 -12.73 16 16 N -0.69 -12.21 5.35 -11.15 -0.06 -12.27 16 17 C 0.20 3.30 6.44 -83.68 -0.54 2.77 16 18 C -0.12 -1.95 8.72 -39.30 -0.34 -2.29 16 19 C -0.08 -1.10 9.95 -39.98 -0.40 -1.49 16 20 C -0.10 -1.30 10.05 -39.60 -0.40 -1.70 16 21 C 0.03 0.50 7.36 -85.06 -0.63 -0.12 16 22 N -0.26 -4.19 12.43 32.03 0.40 -3.79 16 23 N -0.02 -0.34 13.29 60.35 0.80 0.46 16 24 N -0.42 -5.57 7.07 32.41 0.23 -5.34 16 25 H 0.45 4.49 8.96 -190.22 -1.71 2.79 16 26 C -0.01 -0.08 7.31 -84.05 -0.61 -0.70 16 27 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 28 H 0.15 3.26 6.69 -52.49 -0.35 2.91 16 29 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.40 6.20 7.88 -40.82 -0.32 5.88 16 31 H 0.16 2.98 5.77 -52.49 -0.30 2.68 16 32 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 33 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -27.80 305.67 -8.48 -36.28 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -3.43 Total: 12.47 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.29 Total: -11.68 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 1.98 Total: -38.05 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.06 Total: -12.73 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.39 Total: -3.44 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.80 -8.48 -36.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158816756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.111 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds