Wall clock time and date at job start Tue Mar 31 2020 10:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86802 * 119.99704 * 2 1 4 4 H 1.48505 * 109.46742 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47289 * 299.99574 * 3 2 1 6 6 H 1.48498 * 109.47269 * 60.00390 * 3 2 1 7 7 C 1.40308 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99968 * 175.09110 * 7 2 1 9 9 C 1.40497 * 120.00154 * 355.09944 * 7 2 1 10 10 C 1.44203 * 123.72353 * 34.80990 * 9 7 2 11 11 C 1.32748 * 114.43764 * 180.31864 * 10 9 7 12 12 S 1.75474 * 111.36819 * 359.73280 * 11 10 9 13 13 C 1.39586 * 123.72009 * 214.63381 * 9 7 2 14 14 C 1.46166 * 125.23248 * 359.96587 * 13 9 7 15 15 O 1.21786 * 119.99664 * 359.73122 * 14 13 9 16 16 N 1.34779 * 120.00117 * 179.72120 * 14 13 9 17 17 C 1.39763 * 119.99903 * 174.36122 * 16 14 13 18 18 C 1.38444 * 120.25663 * 335.21040 * 17 16 14 19 19 C 1.38788 * 120.47094 * 180.02562 * 18 17 16 20 20 C 1.36566 * 120.77815 * 0.02562 * 19 18 17 21 21 C 1.39797 * 119.93515 * 359.97438 * 20 19 18 22 22 N 1.34843 * 134.75551 * 180.02562 * 21 20 19 23 23 N 1.28681 * 109.23436 * 179.19816 * 22 21 20 24 24 N 1.28827 * 111.71358 * 0.75017 * 23 22 21 25 25 H 0.97003 * 125.92265 * 179.34537 * 24 23 22 26 26 C 1.37255 * 108.14717 * 359.37082 * 24 23 22 27 27 H 0.97011 * 120.00187 * 359.97438 * 1 2 3 28 28 H 1.08001 * 122.77963 * 0.05399 * 10 9 7 29 29 H 1.07995 * 124.31743 * 179.76242 * 11 10 9 30 30 H 0.97002 * 119.99968 * 354.36819 * 16 14 13 31 31 H 1.07995 * 119.76250 * 0.02735 * 18 17 16 32 32 H 1.08003 * 119.60258 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.03347 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0079 -1.2151 0.0005 8 1 3.0850 -1.2169 -0.0795 9 6 1.3093 -2.4296 0.1050 10 6 0.0093 -2.6579 -0.4757 11 6 -0.4840 -3.8710 -0.2583 12 16 0.6240 -4.8522 0.6845 13 6 1.7986 -3.5495 0.7795 14 6 3.0876 -3.6247 1.4646 15 8 3.8309 -2.6600 1.4710 16 7 3.4534 -4.7616 2.0893 17 6 4.7319 -4.8746 2.6425 18 6 5.7747 -4.1076 2.1517 19 6 7.0461 -4.2167 2.6974 20 6 7.2934 -5.0804 3.7259 21 6 6.2586 -5.8668 4.2406 22 7 6.1639 -6.7893 5.2196 23 7 4.9485 -7.2053 5.2940 24 7 4.1961 -6.6387 4.4150 25 1 3.2498 -6.8059 4.2832 26 6 4.9661 -5.7579 3.6973 27 1 -0.4851 0.8401 0.0004 28 1 -0.5210 -1.9030 -1.0373 29 1 -1.4444 -4.2109 -0.6164 30 1 2.8294 -5.5013 2.1549 31 1 5.5975 -3.4195 1.3384 32 1 7.8493 -3.6113 2.3039 33 1 8.2874 -5.1553 4.1418 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158816756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:38 Heat of formation + Delta-G solvation = 83.085283 kcal Electronic energy + Delta-G solvation = -22452.882255 eV Core-core repulsion = 18992.141862 eV Total energy + Delta-G solvation = -3460.740393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.27197 -41.01309 -38.71084 -37.77349 -35.97374 -34.93420 -34.20447 -31.52793 -31.27015 -30.23570 -28.00250 -25.33624 -24.45864 -24.23132 -23.24855 -21.81060 -20.75728 -20.20874 -19.35198 -18.76914 -17.67953 -17.34764 -17.26965 -16.67965 -16.41616 -16.19155 -15.90026 -15.42811 -15.15437 -14.27086 -14.13089 -13.89548 -13.54273 -13.34021 -13.24400 -13.12354 -13.02326 -12.89413 -12.75927 -12.42711 -12.18232 -12.15610 -12.05430 -11.37657 -11.18954 -11.10930 -10.45820 -10.00116 -9.44272 -8.94553 -8.87412 -8.75052 -6.52669 -0.45206 0.12790 0.29564 1.20671 1.26650 1.33299 1.35960 1.46679 1.50508 1.65171 1.92621 2.08504 2.16885 2.38197 2.71086 3.01693 3.18905 3.67159 3.79587 3.85320 4.21485 4.33048 4.38699 4.64032 4.79266 4.97035 4.98455 5.21350 5.22693 5.33601 5.40756 5.50963 5.52535 5.73055 5.79446 5.88343 6.31798 6.44583 6.59409 6.74458 7.14407 7.43755 8.08241 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.016017 B = 0.004335 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.700362 B = 6458.058337 C = 7853.779923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.037 3.963 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.250 1.250 6 H -0.265 1.265 7 C -0.410 4.410 8 H 0.084 0.916 9 C 0.121 3.879 10 C -0.126 4.126 11 C -0.186 4.186 12 S 0.009 5.991 13 C -0.455 4.455 14 C 0.592 3.408 15 O -0.561 6.561 16 N -0.675 5.675 17 C 0.173 3.827 18 C -0.128 4.128 19 C -0.076 4.076 20 C -0.083 4.083 21 C 0.017 3.983 22 N -0.274 5.274 23 N -0.022 5.022 24 N -0.399 5.399 25 H 0.463 0.537 26 C -0.008 4.008 27 H 0.299 0.701 28 H 0.140 0.860 29 H 0.177 0.823 30 H 0.408 0.592 31 H 0.141 0.859 32 H 0.171 0.829 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -6.123 1.873 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.174 1.174 6 H -0.190 1.190 7 C -0.442 4.442 8 H 0.102 0.898 9 C 0.110 3.890 10 C -0.158 4.158 11 C -0.320 4.320 12 S 0.265 5.735 13 C -0.573 4.573 14 C 0.391 3.609 15 O -0.444 6.444 16 N -0.318 5.318 17 C 0.073 3.927 18 C -0.153 4.153 19 C -0.097 4.097 20 C -0.106 4.106 21 C -0.108 4.108 22 N -0.151 5.151 23 N -0.004 5.004 24 N -0.130 5.130 25 H 0.312 0.688 26 C -0.131 4.131 27 H 0.110 0.890 28 H 0.157 0.843 29 H 0.195 0.805 30 H 0.244 0.756 31 H 0.158 0.842 32 H 0.188 0.812 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.508 -7.788 3.524 9.665 hybrid contribution -1.212 2.317 -1.402 2.967 sum 3.297 -5.471 2.122 6.731 Atomic orbital electron populations 1.69618 1.08670 1.31775 1.32359 1.26964 0.95803 1.04615 0.90878 0.85055 0.79192 0.75527 0.79490 1.18950 1.17433 1.18974 1.19856 0.95835 0.90332 1.38141 0.89813 1.18367 0.91104 0.92194 0.87369 1.21625 0.96185 0.96215 1.01758 1.25445 1.03782 0.97829 1.04991 1.82346 1.12011 1.17791 1.61394 1.23023 1.03874 1.02764 1.27649 1.16997 0.85470 0.81074 0.77397 1.90647 1.54295 1.36840 1.62654 1.43286 1.13181 1.17607 1.57681 1.16844 0.86146 0.97372 0.92341 1.21542 0.91723 1.00262 1.01751 1.21027 0.96270 0.97431 0.94994 1.20274 0.98341 0.94955 0.97017 1.20156 0.93832 0.99960 0.96863 1.75311 1.09119 1.12432 1.18237 1.77846 0.97467 1.16058 1.09053 1.44709 1.13541 1.29889 1.24886 0.68803 1.19562 0.93673 1.00547 0.99278 0.88954 0.84279 0.80524 0.75637 0.84151 0.81178 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.06 10.99 21.89 0.24 -36.82 16 2 C 0.04 1.73 5.47 85.37 0.47 2.20 16 3 Si 0.99 36.83 29.57 68.60 2.03 38.85 16 4 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 6 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.41 -21.34 8.21 23.32 0.19 -21.15 16 8 H 0.08 4.58 6.53 -2.91 -0.02 4.56 16 9 C 0.12 6.11 5.61 -20.89 -0.12 6.00 16 10 C -0.13 -5.67 9.04 22.61 0.20 -5.46 16 11 C -0.19 -7.09 11.07 66.64 0.74 -6.35 16 12 S 0.01 0.33 22.26 -56.49 -1.26 -0.93 16 13 C -0.45 -21.11 6.50 24.66 0.16 -20.95 16 14 C 0.59 26.63 7.56 86.30 0.65 27.28 16 15 O -0.56 -28.17 11.82 -4.62 -0.05 -28.23 16 16 N -0.67 -24.01 5.35 -307.35 -1.65 -25.65 16 17 C 0.17 5.75 6.44 38.24 0.25 6.00 16 18 C -0.13 -4.18 8.72 22.45 0.20 -3.98 16 19 C -0.08 -1.87 9.95 22.01 0.22 -1.65 16 20 C -0.08 -2.00 10.05 22.26 0.22 -1.77 16 21 C 0.02 0.51 7.36 39.64 0.29 0.80 16 22 N -0.27 -8.41 12.43 -52.59 -0.65 -9.06 16 23 N -0.02 -0.63 13.29 37.02 0.49 -0.14 16 24 N -0.40 -10.09 7.07 -51.36 -0.36 -10.45 16 25 H 0.46 8.47 8.96 -219.81 -1.97 6.50 16 26 C -0.01 -0.25 7.31 39.19 0.29 0.04 16 27 H 0.30 12.30 8.29 -92.70 -0.77 11.53 16 28 H 0.14 6.36 6.69 -2.91 -0.02 6.34 16 29 H 0.18 5.31 8.06 -2.91 -0.02 5.28 16 30 H 0.41 12.39 7.88 -92.71 -0.73 11.66 16 31 H 0.14 5.31 5.77 -2.91 -0.02 5.30 16 32 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -61.85 305.67 1.07 -60.78 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -1.47 Total: 30.66 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 3.76 Total: -19.01 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.93 Total: -82.13 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.23 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.26 Total: -0.93 kcal Total: -61.85 1.07 -60.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158816756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.862 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds