Wall clock time and date at job start Tue Mar 31 2020 11:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00290 * 2 1 4 4 H 1.48500 * 109.47280 * 270.00475 * 3 2 1 5 5 H 1.48507 * 109.47041 * 30.00085 * 3 2 1 6 6 H 1.48499 * 109.47010 * 149.99874 * 3 2 1 7 7 C 1.37878 * 119.99416 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00676 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99734 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47465 * 179.97438 * 9 7 2 11 11 C 1.39010 * 119.99502 * 89.99842 * 10 9 7 12 12 C 1.39047 * 119.69228 * 4.97830 * 11 10 9 13 13 C 1.38490 * 119.10823 * 179.72604 * 12 11 10 14 14 Cl 1.73596 * 120.75130 * 180.29842 * 13 12 11 15 15 C 1.38965 * 118.49412 * 0.53803 * 13 12 11 16 16 C 1.38146 * 119.29827 * 359.48273 * 15 13 12 17 17 Cl 1.73605 * 119.57971 * 180.27462 * 16 15 13 18 18 N 1.32083 * 120.83749 * 0.25434 * 16 15 13 19 19 C 1.46491 * 120.00116 * 270.00419 * 10 9 7 20 20 C 1.54274 * 110.02997 * 237.16300 * 19 10 9 21 21 C 1.54891 * 104.19612 * 217.10666 * 20 19 10 22 22 C 1.54889 * 102.74927 * 37.94021 * 21 20 19 23 23 C 1.53872 * 110.03568 * 119.99901 * 19 10 9 24 24 H 0.96997 * 119.99454 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47155 * 59.99847 * 9 7 2 26 26 H 1.09003 * 109.47214 * 300.00139 * 9 7 2 27 27 H 1.07992 * 120.44452 * 0.02670 * 12 11 10 28 28 H 1.08002 * 120.35312 * 179.76386 * 15 13 12 29 29 H 1.08997 * 110.02215 * 358.60450 * 19 10 9 30 30 H 1.09003 * 110.48680 * 335.78082 * 20 19 10 31 31 H 1.08994 * 110.48666 * 98.42459 * 20 19 10 32 32 H 1.09002 * 110.75286 * 279.62681 * 21 20 19 33 33 H 1.08997 * 110.75739 * 156.25622 * 21 20 19 34 34 H 1.08999 * 110.48855 * 203.38189 * 22 21 20 35 35 H 1.08999 * 110.59614 * 80.79570 * 22 21 20 36 36 H 1.09005 * 110.03222 * 238.56958 * 23 19 10 37 37 H 1.09003 * 110.03535 * 359.94681 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 -0.0001 11 6 4.2319 -3.2304 -1.2040 12 6 4.0986 -2.5372 -2.4020 13 6 4.3383 -3.2001 -3.5942 14 17 4.1918 -2.3741 -5.1140 15 6 4.6937 -4.5426 -3.5464 16 6 4.8071 -5.1687 -2.3202 17 17 5.2577 -6.8438 -2.2516 18 7 4.5775 -4.5088 -1.1992 19 6 4.2434 -3.2663 1.2685 20 6 5.7065 -3.7512 1.3337 21 6 5.6215 -5.1197 2.0542 22 6 4.3163 -5.7266 1.4821 23 6 3.3596 -4.5223 1.3629 24 1 -0.4849 0.8401 0.0004 25 1 3.8745 -0.6810 0.8905 26 1 3.8752 -0.6798 -0.8894 27 1 3.8167 -1.4948 -2.4026 28 1 4.8837 -5.0897 -4.4580 29 1 4.0332 -2.5982 2.1037 30 1 6.1130 -3.8734 0.3297 31 1 6.3142 -3.0537 1.9100 32 1 5.5440 -4.9841 3.1330 33 1 6.4798 -5.7427 1.8027 34 1 3.9094 -6.4707 2.1669 35 1 4.4964 -6.1692 0.5025 36 1 2.7209 -4.4641 2.2444 37 1 2.7486 -4.6174 0.4652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:07 Heat of formation + Delta-G solvation = 29.730866 kcal Electronic energy + Delta-G solvation = -22308.521647 eV Core-core repulsion = 18944.531420 eV Total energy + Delta-G solvation = -3363.990226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.065 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29920 -37.98704 -36.67539 -36.33476 -34.96741 -32.63518 -31.84036 -29.95225 -28.58898 -28.25937 -26.18521 -23.53302 -22.92229 -21.27765 -20.34485 -19.59208 -17.17631 -17.03833 -16.72997 -15.55111 -15.50152 -14.96379 -14.66059 -14.52462 -13.96617 -13.84040 -13.37053 -12.87631 -12.65888 -12.39877 -12.30449 -12.17207 -11.82632 -11.40251 -11.27822 -11.15307 -10.88341 -10.80063 -10.73273 -10.67375 -10.63437 -10.31360 -10.25861 -10.03984 -9.70712 -9.31558 -9.19142 -9.03599 -8.75749 -7.03074 -6.24790 -4.26820 1.27606 1.49674 1.75223 2.31345 3.14277 3.21116 3.23213 3.52861 3.98174 4.22497 4.93743 5.01675 5.07226 5.08862 5.20517 5.23623 5.36653 5.49778 5.77927 5.84253 5.88002 5.95377 5.99836 6.08190 6.16825 6.24835 6.27801 6.43824 6.47158 6.53766 6.60482 6.63488 6.79915 6.87110 7.35689 7.42844 7.93685 8.20885 8.41868 8.82316 9.33236 10.87874 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.006494 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.026955 B = 4310.659312 C = 6246.888419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.566 5.566 11 C 0.451 3.549 12 C -0.217 4.217 13 C 0.058 3.942 14 Cl -0.057 7.057 15 C -0.233 4.233 16 C 0.235 3.765 17 Cl -0.040 7.040 18 N -0.531 5.531 19 C 0.159 3.841 20 C -0.129 4.129 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.118 4.118 24 H 0.267 0.733 25 H 0.038 0.962 26 H 0.030 0.970 27 H 0.154 0.846 28 H 0.141 0.859 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.624 -8.564 -2.933 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.272 5.272 11 C 0.213 3.787 12 C -0.243 4.243 13 C 0.024 3.976 14 Cl -0.028 7.028 15 C -0.259 4.259 16 C 0.069 3.931 17 Cl -0.012 7.012 18 N -0.253 5.253 19 C 0.055 3.945 20 C -0.168 4.168 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.157 4.157 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.172 0.828 28 H 0.159 0.841 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.495 -8.759 -2.034 14.594 hybrid contribution 0.060 1.330 -0.909 1.612 sum 11.554 -7.429 -2.943 14.048 Atomic orbital electron populations 1.69887 1.06206 1.27207 1.49282 1.24860 0.94730 0.98797 0.94257 0.86971 0.80418 0.84105 0.79016 1.19740 1.20775 1.18907 1.21371 0.88848 0.95100 1.52538 0.90263 1.19900 0.95911 0.76729 0.97634 1.47112 1.64958 1.14137 1.01039 1.17845 0.88201 0.86041 0.86621 1.21526 1.09611 1.03334 0.89855 1.20661 0.97842 0.92000 0.87139 1.98371 1.96096 1.78404 1.29905 1.21065 1.12935 0.93936 0.97988 1.20894 0.96194 0.87129 0.88916 1.98379 1.90446 1.13767 1.98612 1.66657 1.21330 1.07871 1.29404 1.21589 0.93898 0.93795 0.85187 1.22728 0.96363 0.96377 1.01291 1.22330 0.98041 0.96136 0.98746 1.22295 0.94718 0.96947 1.01292 1.22341 0.97680 0.93882 1.01794 0.92315 0.94419 0.95215 0.82828 0.84133 0.89382 0.90535 0.92573 0.92329 0.92257 0.93274 0.90080 0.92429 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 19.61 27.47 -169.99 -4.67 14.94 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 7 C -0.54 -14.04 9.94 -34.44 -0.34 -14.38 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.22 4.71 4.05 -5.19 -0.02 4.69 16 10 N -0.57 -10.93 2.50 -166.36 -0.42 -11.35 16 11 C 0.45 8.37 6.21 -155.01 -0.96 7.41 16 12 C -0.22 -3.93 9.09 -39.19 -0.36 -4.29 16 13 C 0.06 0.92 6.37 -39.22 -0.25 0.67 16 14 Cl -0.06 -0.81 29.02 -51.86 -1.50 -2.31 16 15 C -0.23 -3.42 9.69 -39.35 -0.38 -3.80 16 16 C 0.24 3.62 7.27 -17.48 -0.13 3.49 16 17 Cl -0.04 -0.52 29.04 -51.86 -1.51 -2.03 16 18 N -0.53 -9.03 5.01 -9.57 -0.05 -9.08 16 19 C 0.16 2.73 3.36 -66.81 -0.22 2.50 16 20 C -0.13 -1.90 6.06 -25.07 -0.15 -2.05 16 21 C -0.11 -1.49 6.91 -24.74 -0.17 -1.66 16 22 C -0.11 -1.65 6.35 -25.07 -0.16 -1.81 16 23 C -0.12 -1.99 5.75 -25.61 -0.15 -2.14 16 24 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.04 0.80 6.98 -51.93 -0.36 0.44 16 26 H 0.03 0.63 5.40 -51.93 -0.28 0.35 16 27 H 0.15 2.92 6.02 -52.49 -0.32 2.60 16 28 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.09 1.51 7.82 -51.93 -0.41 1.11 16 30 H 0.08 1.23 6.12 -51.93 -0.32 0.91 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.23 6.85 -51.93 -0.36 0.88 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.38 7.02 -51.93 -0.36 1.02 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -26.75 325.61 -10.38 -37.13 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.53 Total: 2.14 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.39 Total: -9.38 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.31 Total: -45.40 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.67 Total: 14.94 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -3.01 Total: -4.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.75 -10.38 -37.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.861 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds