Wall clock time and date at job start Tue Mar 31 2020 10:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36010 * 116.99809 * 2 1 4 4 C 1.38699 * 120.49567 * 0.02562 * 3 2 1 5 5 C 1.38923 * 118.45252 * 179.97438 * 4 3 2 6 6 Br 1.89099 * 120.32299 * 179.97438 * 5 4 3 7 7 C 1.38084 * 119.34992 * 359.97438 * 5 4 3 8 8 N 1.32032 * 120.94181 * 359.74840 * 7 5 4 9 9 C 1.32290 * 121.68314 * 0.52165 * 8 7 5 10 10 N 1.39292 * 119.71959 * 179.75182 * 9 8 7 11 11 C 1.46499 * 120.00102 * 359.73012 * 10 9 8 12 12 C 1.53000 * 109.46840 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 H 1.08991 * 109.47444 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47241 * 300.00222 * 1 2 3 24 24 H 1.09005 * 109.47004 * 60.00262 * 1 2 3 25 25 H 1.07998 * 120.77228 * 359.95268 * 4 3 2 26 26 H 1.08002 * 119.53230 * 180.02562 * 7 5 4 27 27 H 0.97000 * 119.99478 * 179.72157 * 10 9 8 28 28 H 1.09002 * 109.47391 * 59.99586 * 11 10 9 29 29 H 1.09001 * 109.46813 * 299.99642 * 11 10 9 30 30 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 31 31 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 32 32 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 33 33 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 34 34 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3011 2.3816 0.0005 5 6 1.9755 3.5961 0.0011 6 35 1.0119 5.2232 0.0011 7 6 3.3563 3.6036 0.0016 8 7 4.0412 2.4748 0.0065 9 6 3.4393 1.2968 0.0010 10 7 4.2024 0.1315 0.0013 11 6 5.6650 0.2136 0.0019 12 6 6.2551 -1.1980 0.0028 13 6 7.7827 -1.1123 0.0040 14 6 8.3639 -2.5026 0.0056 15 1 7.7092 -3.3616 0.0061 16 6 9.7314 -2.6782 0.0063 17 7 10.2386 -3.8917 0.0082 18 14 10.8638 -1.1926 0.0047 19 1 11.1634 -0.7970 1.4044 20 1 12.1284 -1.5349 -0.6945 21 1 10.1998 -0.0649 -0.6971 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2216 2.3489 0.0002 26 1 3.8836 4.5461 0.0024 27 1 3.7652 -0.7344 0.0013 28 1 5.9987 0.7471 0.8919 29 1 5.9993 0.7469 -0.8881 30 1 5.9208 -1.7310 0.8930 31 1 5.9215 -1.7319 -0.8869 32 1 8.1174 -0.5793 -0.8859 33 1 8.1160 -0.5785 0.8941 34 1 11.2007 -4.0151 0.0084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:11 Heat of formation + Delta-G solvation = -5.841455 kcal Electronic energy + Delta-G solvation = -17520.090291 eV Core-core repulsion = 14499.420682 eV Total energy + Delta-G solvation = -3020.669608 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88195 -38.33977 -36.45788 -33.85498 -32.57864 -31.65506 -30.86356 -29.04634 -27.63884 -26.61413 -23.64381 -22.85072 -21.85782 -20.33664 -18.34287 -17.64174 -17.14637 -16.66306 -16.19039 -15.09847 -14.98291 -14.80597 -14.33474 -14.02050 -13.98040 -13.62444 -12.77103 -12.65586 -12.43885 -11.97402 -11.82925 -11.75930 -11.42949 -11.05916 -10.88476 -10.61208 -10.12386 -9.96428 -9.77095 -9.68515 -9.64946 -9.40828 -9.21747 -8.54813 -7.46811 -6.05487 -4.04125 0.95412 1.03666 1.44321 2.90550 3.21656 3.31793 3.39276 3.43372 3.57713 4.31237 4.45053 4.57335 4.66653 4.84454 4.85165 4.92517 5.18446 5.28606 5.41104 5.54249 5.65922 5.69656 5.99760 6.06016 6.45629 6.47811 6.77153 6.81618 7.14867 7.24234 7.37728 7.40412 7.77125 8.07652 8.51562 8.98662 9.56717 11.07861 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.002712 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.681224 B =10320.231901 C =11427.860733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.015 3.985 4 C -0.101 4.101 5 C -0.183 4.183 6 Br -0.050 7.050 7 C 0.155 3.845 8 N -0.505 5.505 9 C 0.414 3.586 10 N -0.703 5.703 11 C 0.125 3.875 12 C -0.115 4.115 13 C -0.009 4.009 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 H 0.103 0.897 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.144 0.856 26 H 0.164 0.836 27 H 0.415 0.585 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.234 17.661 -0.056 29.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C -0.038 4.038 4 C -0.128 4.128 5 C -0.268 4.268 6 Br 0.034 6.966 7 C -0.004 4.004 8 N -0.225 5.225 9 C 0.173 3.827 10 N -0.334 5.334 11 C 0.001 3.999 12 C -0.153 4.153 13 C -0.047 4.047 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.121 0.879 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.161 0.839 26 H 0.181 0.819 27 H 0.252 0.748 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.205 17.954 -0.051 29.340 hybrid contribution -0.461 0.107 0.018 0.474 sum -23.667 18.061 -0.033 29.771 Atomic orbital electron populations 1.23063 0.78152 1.04234 1.01208 1.86054 1.21466 1.25274 1.89598 1.19271 0.91252 0.85475 1.07767 1.21231 1.00376 0.90068 1.01128 1.22200 0.95334 0.91833 1.17433 1.96655 1.74308 1.27562 1.98112 1.22375 0.88956 0.96101 0.92929 1.67540 1.37874 0.96336 1.20736 1.18082 0.84698 0.88041 0.91901 1.44973 1.06807 1.04474 1.77128 1.21652 0.76887 0.99485 1.01828 1.21714 0.98732 0.93101 1.01745 1.19485 0.90459 0.98150 0.96630 1.21110 0.92250 0.91625 1.51008 0.91038 1.25034 0.98271 0.95725 0.94483 1.69917 1.12341 1.20934 1.51071 0.86766 0.80222 0.83684 0.78581 1.20242 1.21390 1.18857 0.87910 0.92700 0.92707 0.83860 0.81869 0.74818 0.91822 0.91820 0.92176 0.92147 0.96299 0.96736 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.83 101.05 0.99 1.19 16 2 O -0.31 -3.42 9.74 -19.77 -0.19 -3.62 16 3 C 0.01 0.18 6.72 -38.92 -0.26 -0.08 16 4 C -0.10 -1.06 8.90 -39.16 -0.35 -1.40 16 5 C -0.18 -1.98 6.24 -39.38 -0.25 -2.23 16 6 Br -0.05 -0.45 33.73 -68.01 -2.29 -2.75 16 7 C 0.15 1.84 10.93 -17.52 -0.19 1.65 16 8 N -0.50 -7.29 9.57 -12.26 -0.12 -7.40 16 9 C 0.41 5.90 7.50 -154.67 -1.16 4.74 16 10 N -0.70 -10.26 5.71 -60.25 -0.34 -10.60 16 11 C 0.12 2.05 5.70 -4.04 -0.02 2.02 16 12 C -0.11 -2.18 5.27 -26.73 -0.14 -2.32 16 13 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 14 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 15 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 18 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 22 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 24 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 25 H 0.14 1.16 6.44 -52.49 -0.34 0.82 16 26 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.41 5.58 7.82 -40.82 -0.32 5.26 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 33 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -31.31 310.67 -8.43 -39.74 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.35 Total: 0.08 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.92 Total: -10.05 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.31 Total: -45.13 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.19 Total: -3.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.75 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.31 -8.43 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.901 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds