Wall clock time and date at job start Tue Mar 31 2020 10:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36010 * 116.99809 * 2 1 4 4 C 1.38699 * 120.49567 * 0.02562 * 3 2 1 5 5 C 1.38923 * 118.45252 * 179.97438 * 4 3 2 6 6 Br 1.89099 * 120.32299 * 179.97438 * 5 4 3 7 7 C 1.38084 * 119.34992 * 359.97438 * 5 4 3 8 8 N 1.32032 * 120.94181 * 359.74840 * 7 5 4 9 9 C 1.32290 * 121.68314 * 0.52165 * 8 7 5 10 10 N 1.39292 * 119.71959 * 179.75182 * 9 8 7 11 11 C 1.46499 * 120.00102 * 359.73012 * 10 9 8 12 12 C 1.53000 * 109.46840 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 H 1.08991 * 109.47444 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47241 * 300.00222 * 1 2 3 24 24 H 1.09005 * 109.47004 * 60.00262 * 1 2 3 25 25 H 1.07998 * 120.77228 * 359.95268 * 4 3 2 26 26 H 1.08002 * 119.53230 * 180.02562 * 7 5 4 27 27 H 0.97000 * 119.99478 * 179.72157 * 10 9 8 28 28 H 1.09002 * 109.47391 * 59.99586 * 11 10 9 29 29 H 1.09001 * 109.46813 * 299.99642 * 11 10 9 30 30 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 31 31 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 32 32 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 33 33 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 34 34 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3011 2.3816 0.0005 5 6 1.9755 3.5961 0.0011 6 35 1.0119 5.2232 0.0011 7 6 3.3563 3.6036 0.0016 8 7 4.0412 2.4748 0.0065 9 6 3.4393 1.2968 0.0010 10 7 4.2024 0.1315 0.0013 11 6 5.6650 0.2136 0.0019 12 6 6.2551 -1.1980 0.0028 13 6 7.7827 -1.1123 0.0040 14 6 8.3639 -2.5026 0.0056 15 1 7.7092 -3.3616 0.0061 16 6 9.7314 -2.6782 0.0063 17 7 10.2386 -3.8917 0.0082 18 14 10.8638 -1.1926 0.0047 19 1 11.1634 -0.7970 1.4044 20 1 12.1284 -1.5349 -0.6945 21 1 10.1998 -0.0649 -0.6971 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2216 2.3489 0.0002 26 1 3.8836 4.5461 0.0024 27 1 3.7652 -0.7344 0.0013 28 1 5.9987 0.7471 0.8919 29 1 5.9993 0.7469 -0.8881 30 1 5.9208 -1.7310 0.8930 31 1 5.9215 -1.7319 -0.8869 32 1 8.1174 -0.5793 -0.8859 33 1 8.1160 -0.5785 0.8941 34 1 11.2007 -4.0151 0.0084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:11 Heat of formation + Delta-G solvation = -25.752704 kcal Electronic energy + Delta-G solvation = -17520.953707 eV Core-core repulsion = 14499.420682 eV Total energy + Delta-G solvation = -3021.533025 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77090 -39.15807 -37.69508 -35.54367 -33.97379 -33.05446 -31.82708 -30.18126 -28.38218 -28.06376 -24.98209 -23.86616 -23.05205 -22.01711 -19.27812 -18.94089 -18.41586 -18.05700 -16.99129 -16.37376 -16.27837 -16.04027 -15.57147 -15.07881 -15.05597 -14.78143 -14.46323 -13.89244 -13.76028 -13.50518 -12.86684 -12.71516 -12.51416 -12.46052 -12.26073 -11.84875 -11.71182 -11.59133 -11.36957 -11.31435 -10.76475 -10.74806 -10.67347 -10.28826 -8.44667 -8.28944 -6.33319 0.03537 0.16101 0.60584 1.38346 1.39913 1.52257 2.16467 2.17859 2.37630 2.64483 3.06801 3.41823 3.78096 3.91870 3.94482 4.15303 4.24019 4.29482 4.39473 4.53016 4.57135 4.75100 4.79815 4.93329 4.93677 5.04322 5.20033 5.45794 5.56983 5.64670 5.90162 6.11471 6.28514 6.45266 6.74788 7.08882 7.31558 8.87791 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.002712 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.681224 B =10320.231901 C =11427.860733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.015 3.985 4 C -0.096 4.096 5 C -0.178 4.178 6 Br -0.029 7.029 7 C 0.142 3.858 8 N -0.528 5.528 9 C 0.388 3.612 10 N -0.709 5.709 11 C 0.145 3.855 12 C -0.103 4.103 13 C -0.008 4.008 14 C -0.533 4.533 15 H 0.033 0.967 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.245 1.245 22 H 0.119 0.881 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.170 0.830 26 H 0.181 0.819 27 H 0.417 0.583 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.711 20.153 -0.048 32.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.240 6.240 3 C -0.037 4.037 4 C -0.123 4.123 5 C -0.263 4.263 6 Br 0.055 6.945 7 C -0.016 4.016 8 N -0.248 5.248 9 C 0.149 3.851 10 N -0.342 5.342 11 C 0.021 3.979 12 C -0.141 4.141 13 C -0.046 4.046 14 C -0.571 4.571 15 H 0.051 0.949 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.168 1.168 22 H 0.138 0.862 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.187 0.813 26 H 0.198 0.802 27 H 0.255 0.745 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.734 20.476 -0.043 32.110 hybrid contribution -0.191 -0.672 0.017 0.698 sum -24.925 19.804 -0.026 31.835 Atomic orbital electron populations 1.23383 0.75993 1.05860 1.02361 1.86046 1.23703 1.24843 1.89448 1.19264 0.90717 0.86477 1.07264 1.21531 1.01601 0.89301 0.99890 1.22382 0.95317 0.92926 1.15696 1.96686 1.73621 1.26192 1.97993 1.22697 0.89698 0.96058 0.93158 1.67474 1.39149 0.97030 1.21194 1.18242 0.85667 0.87760 0.93432 1.44715 1.05807 1.05065 1.78640 1.21218 0.78280 0.97063 1.01384 1.21487 0.96053 0.94987 1.01557 1.19428 0.93190 0.95046 0.96936 1.21486 0.92228 0.93016 1.50381 0.94854 1.26032 1.00232 0.99014 0.94095 1.70072 1.12938 1.23591 1.52719 0.85645 0.77765 0.79922 0.79269 1.19129 1.21042 1.16812 0.86240 0.91480 0.91483 0.81276 0.80193 0.74485 0.92243 0.92300 0.92401 0.92403 0.95862 0.95989 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 113.37 1.11 1.32 16 2 O -0.33 -6.70 9.74 -93.66 -0.91 -7.62 16 3 C 0.02 0.35 6.72 22.70 0.15 0.51 16 4 C -0.10 -1.78 8.90 22.54 0.20 -1.58 16 5 C -0.18 -3.47 6.24 22.40 0.14 -3.33 16 6 Br -0.03 -0.45 33.73 -20.37 -0.69 -1.14 16 7 C 0.14 3.16 10.93 84.63 0.92 4.08 16 8 N -0.53 -14.78 9.57 -192.69 -1.84 -16.62 16 9 C 0.39 10.77 7.50 133.10 1.00 11.77 16 10 N -0.71 -20.47 5.71 -344.53 -1.97 -22.44 16 11 C 0.14 4.68 5.70 86.38 0.49 5.17 16 12 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 13 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 14 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 15 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 16 C 0.00 0.17 5.47 84.65 0.46 0.63 16 17 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 18 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 22 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 0.59 7.70 -2.39 -0.02 0.57 16 24 H 0.07 0.59 7.70 -2.38 -0.02 0.57 16 25 H 0.17 2.16 6.44 -2.91 -0.02 2.15 16 26 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 27 H 0.42 11.20 7.82 -92.71 -0.72 10.48 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 33 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -68.06 310.67 2.12 -65.94 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.33 Total: 11.47 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 5.02 Total: -16.04 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -3.51 Total: -99.00 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.91 Total: -7.62 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -0.69 Total: -1.14 kcal Total: -68.06 2.12 -65.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.185 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds