Wall clock time and date at job start Tue Mar 31 2020 10:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35687 * 116.99758 * 2 1 4 4 N 1.32352 * 119.64751 * 0.27167 * 3 2 1 5 5 C 1.32457 * 121.56311 * 180.31293 * 4 3 2 6 6 N 1.39036 * 119.66471 * 179.71894 * 5 4 3 7 7 C 1.46500 * 120.00312 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46974 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46891 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47262 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99834 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00395 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99666 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00322 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46926 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47132 * 119.99385 * 14 12 10 17 17 H 1.48499 * 109.46945 * 239.99478 * 14 12 10 18 18 C 1.39003 * 120.67662 * 359.70233 * 5 4 3 19 19 C 1.38474 * 119.22749 * 359.97438 * 18 5 4 20 20 C 1.38688 * 118.56007 * 359.97438 * 19 18 5 21 21 Br 1.89100 * 120.36840 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47566 * 300.00073 * 1 2 3 24 24 H 1.09004 * 109.47211 * 60.00388 * 1 2 3 25 25 H 0.97000 * 119.99702 * 359.97438 * 6 5 4 26 26 H 1.08995 * 109.47003 * 300.00175 * 7 6 5 27 27 H 1.09000 * 109.46575 * 60.00702 * 7 6 5 28 28 H 1.09000 * 109.47184 * 300.00250 * 8 7 6 29 29 H 1.09000 * 109.47141 * 60.00749 * 8 7 6 30 30 H 1.09000 * 109.47107 * 299.99925 * 9 8 7 31 31 H 1.08997 * 109.47439 * 59.99702 * 9 8 7 32 32 H 0.97004 * 119.99600 * 180.02562 * 13 12 10 33 33 H 1.07999 * 120.38731 * 180.02562 * 18 5 4 34 34 H 1.08005 * 120.71977 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3173 2.3145 0.0055 5 6 1.8787 3.5142 -0.0005 6 7 1.0762 4.6495 -0.0003 7 6 1.6893 5.9800 -0.0063 8 6 0.5927 7.0470 -0.0042 9 6 1.2330 8.4365 -0.0111 10 6 0.1530 9.4874 -0.0083 11 1 -0.8864 9.1936 -0.0027 12 6 0.4914 10.8239 -0.0141 13 7 1.7570 11.1817 -0.0215 14 14 -0.8474 12.1266 -0.0114 15 1 -2.1785 11.4683 -0.0034 16 1 -0.7081 12.9771 1.1979 17 1 -0.7200 12.9699 -1.2270 18 6 3.2621 3.6497 -0.0066 19 6 4.0529 2.5130 -0.0058 20 6 3.4315 1.2731 0.0016 21 35 4.4619 -0.3126 0.0038 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.1103 4.5607 0.0037 26 1 2.3116 6.0973 0.8808 27 1 2.3044 6.0925 -0.8992 28 1 -0.0300 6.9298 -0.8911 29 1 -0.0221 6.9343 0.8889 30 1 1.8559 8.5539 0.8757 31 1 1.8476 8.5489 -0.9042 32 1 1.9951 12.1220 -0.0252 33 1 3.7150 4.6302 -0.0110 34 1 5.1301 2.5902 -0.0108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:05 Heat of formation + Delta-G solvation = -9.290608 kcal Electronic energy + Delta-G solvation = -17365.991024 eV Core-core repulsion = 14345.171849 eV Total energy + Delta-G solvation = -3020.819175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73911 -38.42880 -36.20014 -33.82960 -32.83381 -31.46661 -30.87866 -28.80865 -27.22367 -26.27830 -23.77874 -23.06659 -21.87527 -20.49861 -18.41896 -17.69403 -16.40833 -16.23522 -15.93507 -15.39550 -15.04382 -14.91053 -14.48591 -13.93072 -13.77173 -13.46569 -12.51681 -12.37565 -12.27280 -11.93288 -11.90546 -11.43321 -11.28314 -10.96492 -10.83286 -10.62414 -10.39514 -9.99816 -9.75833 -9.74485 -9.57448 -9.26139 -9.20882 -8.45054 -7.63629 -6.09884 -4.12857 1.12911 1.21740 1.69219 2.80256 3.20526 3.25354 3.33406 3.37044 3.67354 4.38403 4.49357 4.84161 4.91297 5.09561 5.17037 5.17599 5.26585 5.43630 5.49413 5.54677 5.74570 5.83473 5.92406 6.09795 6.43331 6.49361 6.83502 6.95090 6.96738 7.51848 7.52926 7.64082 7.88143 7.95892 8.29516 8.93662 9.52103 11.01416 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.036039 B = 0.002381 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.746235 B =11755.624885 C =12501.310415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.296 6.296 3 C 0.397 3.603 4 N -0.596 5.596 5 C 0.457 3.543 6 N -0.708 5.708 7 C 0.120 3.880 8 C -0.121 4.121 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.269 4.269 19 C 0.026 3.974 20 C -0.235 4.235 21 Br -0.044 7.044 22 H 0.096 0.904 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.405 0.595 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.145 0.855 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -24.085 0.027 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.202 6.202 3 C 0.214 3.786 4 N -0.331 5.331 5 C 0.219 3.781 6 N -0.336 5.336 7 C -0.003 4.003 8 C -0.159 4.159 9 C -0.013 4.013 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.294 4.294 19 C 0.000 4.000 20 C -0.320 4.320 21 Br 0.039 6.961 22 H 0.114 0.886 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.241 0.759 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.163 0.837 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.963 -24.617 0.032 24.934 hybrid contribution -0.703 1.364 -0.003 1.535 sum 3.261 -23.253 0.030 23.481 Atomic orbital electron populations 1.22883 0.77087 1.02920 1.02689 1.86339 1.22954 1.23852 1.87022 1.18903 0.87470 0.84265 0.87992 1.66789 1.39708 0.97402 1.29155 1.18086 0.88376 0.85207 0.86477 1.45078 1.08781 1.02866 1.76923 1.21840 0.97679 0.79320 1.01507 1.21887 0.96717 0.96009 1.01280 1.19031 0.96214 0.88400 0.97632 1.21224 0.92996 0.90962 1.50964 0.92573 1.25021 0.95416 0.98811 0.95160 1.69966 1.15997 1.16744 1.50579 0.86521 0.82076 0.81669 0.77659 1.19738 1.20944 1.20949 1.21352 0.92100 1.00270 1.15720 1.21081 1.00397 0.89147 0.89422 1.21157 0.91306 0.93607 1.25948 1.96598 1.69424 1.31722 1.98329 0.88582 0.92139 0.92162 0.75891 0.91633 0.91627 0.92502 0.92496 0.96228 0.96225 0.92924 0.83725 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.30 -3.68 9.81 -18.76 -0.18 -3.87 16 3 C 0.40 5.42 7.48 -17.12 -0.13 5.29 16 4 N -0.60 -8.43 9.24 -12.49 -0.12 -8.54 16 5 C 0.46 6.38 7.65 -154.99 -1.19 5.20 16 6 N -0.71 -9.72 5.73 -60.43 -0.35 -10.06 16 7 C 0.12 1.78 4.89 -4.04 -0.02 1.76 16 8 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 11 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 14 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.27 -3.39 9.32 -39.21 -0.37 -3.75 16 19 C 0.03 0.30 9.92 -39.33 -0.39 -0.09 16 20 C -0.24 -3.00 6.26 -39.20 -0.25 -3.24 16 21 Br -0.04 -0.50 33.18 -68.01 -2.26 -2.76 16 22 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 25 H 0.41 5.28 8.60 -40.82 -0.35 4.93 16 26 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 27 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.15 1.67 6.69 -52.49 -0.35 1.32 16 34 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -29.45 314.98 -8.86 -38.31 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.44 Total: -0.35 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.98 Total: -8.26 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.27 Total: -43.82 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.18 Total: -3.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.26 Total: -2.76 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.45 -8.86 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.015 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds