Wall clock time and date at job start Tue Mar 31 2020 10:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35687 * 116.99758 * 2 1 4 4 N 1.32352 * 119.64751 * 0.27167 * 3 2 1 5 5 C 1.32457 * 121.56311 * 180.31293 * 4 3 2 6 6 N 1.39036 * 119.66471 * 179.71894 * 5 4 3 7 7 C 1.46500 * 120.00312 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46974 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46891 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47262 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99834 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00395 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99666 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00322 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46926 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47132 * 119.99385 * 14 12 10 17 17 H 1.48499 * 109.46945 * 239.99478 * 14 12 10 18 18 C 1.39003 * 120.67662 * 359.70233 * 5 4 3 19 19 C 1.38474 * 119.22749 * 359.97438 * 18 5 4 20 20 C 1.38688 * 118.56007 * 359.97438 * 19 18 5 21 21 Br 1.89100 * 120.36840 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47566 * 300.00073 * 1 2 3 24 24 H 1.09004 * 109.47211 * 60.00388 * 1 2 3 25 25 H 0.97000 * 119.99702 * 359.97438 * 6 5 4 26 26 H 1.08995 * 109.47003 * 300.00175 * 7 6 5 27 27 H 1.09000 * 109.46575 * 60.00702 * 7 6 5 28 28 H 1.09000 * 109.47184 * 300.00250 * 8 7 6 29 29 H 1.09000 * 109.47141 * 60.00749 * 8 7 6 30 30 H 1.09000 * 109.47107 * 299.99925 * 9 8 7 31 31 H 1.08997 * 109.47439 * 59.99702 * 9 8 7 32 32 H 0.97004 * 119.99600 * 180.02562 * 13 12 10 33 33 H 1.07999 * 120.38731 * 180.02562 * 18 5 4 34 34 H 1.08005 * 120.71977 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3173 2.3145 0.0055 5 6 1.8787 3.5142 -0.0005 6 7 1.0762 4.6495 -0.0003 7 6 1.6893 5.9800 -0.0063 8 6 0.5927 7.0470 -0.0042 9 6 1.2330 8.4365 -0.0111 10 6 0.1530 9.4874 -0.0083 11 1 -0.8864 9.1936 -0.0027 12 6 0.4914 10.8239 -0.0141 13 7 1.7570 11.1817 -0.0215 14 14 -0.8474 12.1266 -0.0114 15 1 -2.1785 11.4683 -0.0034 16 1 -0.7081 12.9771 1.1979 17 1 -0.7200 12.9699 -1.2270 18 6 3.2621 3.6497 -0.0066 19 6 4.0529 2.5130 -0.0058 20 6 3.4315 1.2731 0.0016 21 35 4.4619 -0.3126 0.0038 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.1103 4.5607 0.0037 26 1 2.3116 6.0973 0.8808 27 1 2.3044 6.0925 -0.8992 28 1 -0.0300 6.9298 -0.8911 29 1 -0.0221 6.9343 0.8889 30 1 1.8559 8.5539 0.8757 31 1 1.8476 8.5489 -0.9042 32 1 1.9951 12.1220 -0.0252 33 1 3.7150 4.6302 -0.0110 34 1 5.1301 2.5902 -0.0108 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:05 Heat of formation + Delta-G solvation = -27.646066 kcal Electronic energy + Delta-G solvation = -17366.786976 eV Core-core repulsion = 14345.171849 eV Total energy + Delta-G solvation = -3021.615127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71311 -39.39286 -37.41546 -35.49596 -34.09243 -32.93717 -31.93923 -29.87697 -28.45610 -27.52719 -25.24671 -24.15903 -23.06633 -22.03899 -19.39506 -18.78877 -18.39074 -17.16569 -16.92187 -16.55259 -16.34001 -16.31191 -15.94431 -14.94034 -14.87314 -14.41745 -14.26203 -13.75367 -13.69893 -13.27989 -12.88545 -12.75792 -12.49405 -12.49116 -12.33610 -12.15581 -11.64271 -11.49591 -11.32189 -11.18363 -10.71128 -10.70170 -10.54958 -10.29742 -8.65664 -8.20231 -6.30134 0.12932 0.25362 0.74175 1.40591 1.41941 1.53849 1.83488 2.21335 2.42108 2.67021 3.14194 3.53860 3.89054 3.94444 4.12550 4.23036 4.25695 4.42685 4.44335 4.56840 4.76050 4.78821 4.86132 4.95956 5.03758 5.16615 5.20249 5.51969 5.73445 5.85214 5.86921 6.00777 6.24629 6.47772 6.87067 6.92517 7.39242 8.91546 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.036039 B = 0.002381 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.746235 B =11755.624885 C =12501.310415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.304 6.304 3 C 0.382 3.618 4 N -0.606 5.606 5 C 0.442 3.558 6 N -0.708 5.708 7 C 0.136 3.864 8 C -0.105 4.105 9 C 0.027 3.973 10 C -0.542 4.542 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.961 3.039 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.280 1.280 18 C -0.274 4.274 19 C 0.032 3.968 20 C -0.245 4.245 21 Br -0.031 7.031 22 H 0.126 0.874 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.408 0.592 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.059 0.941 30 H -0.001 1.001 31 H 0.000 1.000 32 H 0.263 0.737 33 H 0.155 0.845 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -24.894 0.030 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.210 6.210 3 C 0.200 3.800 4 N -0.341 5.341 5 C 0.205 3.795 6 N -0.337 5.337 7 C 0.012 3.988 8 C -0.143 4.143 9 C -0.011 4.011 10 C -0.580 4.580 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.786 3.214 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.300 4.300 19 C 0.005 3.995 20 C -0.329 4.329 21 Br 0.052 6.948 22 H 0.144 0.856 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.244 0.756 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.072 0.928 33 H 0.172 0.828 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.552 -25.461 0.035 25.708 hybrid contribution -0.553 1.517 -0.003 1.614 sum 2.999 -23.944 0.032 24.131 Atomic orbital electron populations 1.23084 0.75666 1.04777 1.02284 1.86334 1.24416 1.23357 1.86893 1.19152 0.88059 0.84471 0.88338 1.66737 1.40239 0.97623 1.29482 1.18244 0.88938 0.85129 0.87195 1.44835 1.08877 1.02356 1.77650 1.21502 0.96315 0.79077 1.01894 1.21588 0.97293 0.93902 1.01561 1.18917 0.95320 0.91237 0.95625 1.21710 0.93900 0.92068 1.50367 0.92233 1.25912 0.97634 1.01261 0.94873 1.70083 1.17996 1.17309 1.51710 0.85463 0.79497 0.78783 0.77697 1.18713 1.20525 1.20534 1.21534 0.91714 1.01143 1.15561 1.21399 1.01664 0.88354 0.88050 1.21419 0.91392 0.94613 1.25504 1.96602 1.68827 1.31081 1.98288 0.85638 0.92525 0.92538 0.75596 0.91310 0.91299 0.92194 0.92190 0.98212 0.98205 0.92777 0.82787 0.80955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.81 16 2 O -0.30 -7.23 9.81 -90.06 -0.88 -8.11 16 3 C 0.38 10.07 7.48 84.75 0.63 10.70 16 4 N -0.61 -16.64 9.24 -306.23 -2.83 -19.47 16 5 C 0.44 11.92 7.65 133.00 1.02 12.93 16 6 N -0.71 -18.74 5.73 -345.12 -1.98 -20.71 16 7 C 0.14 3.92 4.89 86.38 0.42 4.35 16 8 C -0.11 -3.78 5.27 30.60 0.16 -3.62 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 11 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 14 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 15 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 C -0.27 -6.51 9.32 22.51 0.21 -6.30 16 19 C 0.03 0.67 9.92 22.43 0.22 0.90 16 20 C -0.24 -5.88 6.26 22.51 0.14 -5.74 16 21 Br -0.03 -0.66 33.18 -20.37 -0.68 -1.34 16 22 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 24 H 0.06 1.02 8.11 -2.38 -0.02 1.01 16 25 H 0.41 10.26 8.60 -92.71 -0.80 9.47 16 26 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 27 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.15 3.31 6.69 -2.91 -0.02 3.29 16 34 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -62.26 314.98 1.09 -61.17 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.31 Total: 9.98 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.83 Total: -12.14 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.52 Total: -94.55 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.88 Total: -8.11 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -0.68 Total: -1.34 kcal Total: -62.26 1.09 -61.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.529 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds