Wall clock time and date at job start Tue Mar 31 2020 10:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36099 * 119.59597 * 2 1 4 4 C 1.35806 * 120.58616 * 179.75602 * 3 2 1 5 5 N 1.40343 * 120.09576 * 180.27725 * 4 3 2 6 6 C 1.46498 * 120.00138 * 354.71517 * 5 4 3 7 7 C 1.52991 * 109.47220 * 184.96553 * 6 5 4 8 8 C 1.52997 * 109.47178 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47386 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99662 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00227 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00265 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00112 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47312 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47382 * 210.00109 * 13 11 9 16 16 H 1.48497 * 109.47373 * 330.00234 * 13 11 9 17 17 C 1.40739 * 119.80792 * 0.53876 * 4 3 2 18 18 Br 1.89103 * 120.39011 * 179.69951 * 17 4 3 19 19 C 1.36519 * 119.22936 * 359.71839 * 17 4 3 20 20 C 1.34631 * 119.60039 * 180.27156 * 2 1 3 21 21 O 1.22119 * 119.91352 * 359.97438 * 20 2 1 22 22 H 1.09008 * 109.46828 * 179.72320 * 1 2 3 23 23 H 1.09003 * 109.47130 * 59.72859 * 1 2 3 24 24 H 1.08996 * 109.47368 * 299.72273 * 1 2 3 25 25 H 1.07997 * 119.71326 * 0.02562 * 3 2 1 26 26 H 0.96997 * 119.99732 * 174.70535 * 5 4 3 27 27 H 1.09001 * 109.46720 * 304.96633 * 6 5 4 28 28 H 1.08999 * 109.46987 * 64.96181 * 6 5 4 29 29 H 1.09001 * 109.47339 * 299.99701 * 7 6 5 30 30 H 1.08999 * 109.47445 * 59.99908 * 7 6 5 31 31 H 1.08997 * 109.47396 * 299.99913 * 8 7 6 32 32 H 1.09005 * 109.47567 * 60.00081 * 8 7 6 33 33 H 0.96994 * 120.00342 * 179.97438 * 12 11 9 34 34 H 1.08000 * 120.30239 * 180.02562 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1372 1.1834 0.0000 4 6 3.4950 1.2069 0.0050 5 7 4.1777 2.4331 0.0108 6 6 3.4306 3.6879 -0.1053 7 6 4.4112 4.8586 -0.1974 8 6 3.6310 6.1692 -0.3180 9 6 4.5970 7.3224 -0.4081 10 1 5.6609 7.1390 -0.3815 11 6 4.1224 8.6117 -0.5244 12 7 2.8268 8.8351 -0.5574 13 14 5.3197 10.0411 -0.6368 14 1 5.6505 10.2990 -2.0614 15 1 4.6997 11.2539 -0.0452 16 1 6.5609 9.7069 0.1068 17 6 4.2157 -0.0020 -0.0013 18 35 6.1067 0.0115 -0.0031 19 6 3.5337 -1.1846 -0.0065 20 6 2.1300 -1.1706 -0.0055 21 8 1.5105 -2.2229 -0.0101 22 1 -0.3633 -1.0277 -0.0050 23 1 -0.3633 0.5181 -0.8876 24 1 -0.3634 0.5095 0.8924 25 1 1.5860 2.1121 0.0004 26 1 5.1441 2.4497 0.0919 27 1 2.8120 3.6607 -1.0024 28 1 2.7947 3.8146 0.7708 29 1 5.0299 4.8858 0.6996 30 1 5.0471 4.7320 -1.0736 31 1 3.0121 6.1423 -1.2148 32 1 2.9954 6.2957 0.5584 33 1 2.4929 9.7421 -0.6388 34 1 4.0692 -2.1225 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434831.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:40 Heat of formation + Delta-G solvation = -4.674085 kcal Electronic energy + Delta-G solvation = -17602.489029 eV Core-core repulsion = 14581.870042 eV Total energy + Delta-G solvation = -3020.618988 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39661 -37.90475 -35.97100 -34.92594 -33.36700 -31.47584 -31.01434 -28.69766 -27.49090 -26.20665 -24.21094 -22.52770 -22.13355 -20.47615 -17.96327 -17.58292 -16.55525 -16.33948 -16.17940 -15.18590 -14.87503 -14.66454 -14.47559 -14.39184 -13.49256 -13.38338 -12.99109 -12.64136 -12.47035 -12.13104 -11.95242 -11.84011 -11.23680 -10.94530 -10.81037 -10.67485 -10.61483 -10.10348 -10.06676 -9.83049 -9.54887 -9.20578 -9.17902 -8.43405 -7.10956 -6.08646 -4.11342 0.34866 1.14411 1.80212 2.53195 3.26904 3.33659 3.36343 3.37918 3.52245 4.35910 4.39480 4.52089 4.92375 5.06536 5.07572 5.27186 5.27826 5.36153 5.49065 5.50961 5.61594 5.66664 5.99205 6.17295 6.49543 6.54442 6.89898 6.92448 7.25789 7.54793 7.66870 7.75287 7.89837 7.90774 8.31752 8.95105 9.53469 11.02649 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.003390 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.386679 B = 8257.560233 C = 9819.320347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.474 5.474 3 C 0.027 3.973 4 C 0.131 3.869 5 N -0.740 5.740 6 C 0.122 3.878 7 C -0.120 4.120 8 C 0.025 3.975 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.023 4.023 18 Br -0.026 7.026 19 C -0.178 4.178 20 C 0.503 3.497 21 O -0.564 6.564 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.169 0.831 26 H 0.403 0.597 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -18.916 1.526 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.187 5.187 3 C -0.106 4.106 4 C 0.024 3.976 5 N -0.376 5.376 6 C -0.001 4.001 7 C -0.158 4.158 8 C -0.013 4.013 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.110 4.110 18 Br 0.060 6.940 19 C -0.203 4.203 20 C 0.303 3.697 21 O -0.448 6.448 22 H 0.120 0.880 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.187 0.813 26 H 0.240 0.760 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.076 -19.259 1.497 19.347 hybrid contribution 0.632 1.085 -0.064 1.257 sum 1.708 -18.174 1.433 18.310 Atomic orbital electron populations 1.22171 0.76898 1.05939 1.03385 1.44931 1.09141 1.05928 1.58699 1.20956 0.91264 0.90049 1.08285 1.16559 0.90164 0.86249 1.04654 1.44922 1.08823 1.01438 1.82413 1.21628 0.95705 0.82498 1.00307 1.21842 0.98020 0.94866 1.01106 1.19025 0.95371 0.89451 0.97407 1.21204 0.93072 0.91371 1.50451 0.92633 1.25010 0.95113 0.99024 0.95217 1.69948 1.12104 1.20962 1.50380 0.86588 0.81191 0.81941 0.78261 1.20630 1.21188 1.19855 1.22152 0.91396 0.95000 1.02406 1.96784 1.01245 1.98900 1.97110 1.22145 0.93299 0.98062 1.06817 1.16713 0.88476 0.83281 0.81272 1.90964 1.69175 1.29531 1.55167 0.87999 0.90185 0.90195 0.81336 0.76017 0.92375 0.92657 0.92661 0.92605 0.96354 0.96342 0.92917 0.82224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.58 59.85 0.63 1.12 16 2 N -0.47 -5.40 2.99 -127.02 -0.38 -5.78 16 3 C 0.03 0.30 9.65 -16.53 -0.16 0.14 16 4 C 0.13 1.60 6.63 -83.89 -0.56 1.04 16 5 N -0.74 -9.56 5.70 -58.76 -0.33 -9.90 16 6 C 0.12 1.76 4.92 -4.05 -0.02 1.74 16 7 C -0.12 -2.19 5.27 -26.74 -0.14 -2.33 16 8 C 0.03 0.59 4.97 -27.88 -0.14 0.46 16 9 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.02 -0.27 6.25 -39.26 -0.25 -0.51 16 18 Br -0.03 -0.27 32.24 -68.01 -2.19 -2.47 16 19 C -0.18 -2.13 9.72 -39.40 -0.38 -2.52 16 20 C 0.50 6.80 7.40 -15.52 -0.11 6.69 16 21 O -0.56 -9.21 16.38 4.81 0.08 -9.13 16 22 H 0.10 0.95 6.85 -51.92 -0.36 0.59 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.17 1.63 6.66 -52.49 -0.35 1.28 16 26 H 0.40 5.10 7.01 -40.82 -0.29 4.82 16 27 H 0.06 0.82 7.90 -51.93 -0.41 0.41 16 28 H 0.06 0.78 7.97 -51.93 -0.41 0.36 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -30.82 310.78 -8.28 -39.10 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.32 Total: -0.25 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.54 Total: -7.07 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.02 Total: -40.81 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.19 Total: -2.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.82 -8.28 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434831.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.425 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds