Wall clock time and date at job start Tue Mar 31 2020 10:10:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.35574 * 125.69262 * 2 1
4 4 Br 1.89096 * 125.57468 * 359.97438 * 3 2 1
5 5 C 1.35610 * 108.85067 * 180.22952 * 3 2 1
6 6 C 1.39767 * 107.88551 * 359.76764 * 5 3 2
7 7 C 1.37780 * 125.69201 * 179.82731 * 2 1 3
8 8 C 1.46588 * 126.22844 * 0.03738 * 7 2 1
9 9 O 1.21698 * 120.00229 * 354.65021 * 8 7 2
10 10 N 1.34779 * 119.99491 * 174.65320 * 8 7 2
11 11 C 1.46498 * 119.99690 * 175.50836 * 10 8 7
12 12 C 1.53004 * 109.47138 * 179.97438 * 11 10 8
13 13 C 1.52998 * 109.47364 * 179.97438 * 12 11 10
14 14 C 1.50691 * 109.47344 * 180.02562 * 13 12 11
15 15 H 1.08002 * 119.99978 * 359.97438 * 14 13 12
16 16 C 1.37885 * 120.00473 * 180.02562 * 14 13 12
17 17 N 1.31507 * 120.00259 * 180.02562 * 16 14 13
18 18 Si 1.86805 * 119.99327 * 359.97438 * 16 14 13
19 19 H 1.48495 * 109.46932 * 90.00380 * 18 16 14
20 20 H 1.48505 * 109.46708 * 209.99942 * 18 16 14
21 21 H 1.48494 * 109.47281 * 330.00087 * 18 16 14
22 22 H 1.08998 * 109.47393 * 266.90996 * 1 2 3
23 23 H 1.08996 * 109.47036 * 26.91192 * 1 2 3
24 24 H 1.09001 * 109.47114 * 146.91143 * 1 2 3
25 25 H 1.08005 * 126.05998 * 179.78630 * 5 3 2
26 26 H 1.07998 * 126.44624 * 180.02562 * 6 5 3
27 27 H 0.96995 * 120.00237 * 355.49780 * 10 8 7
28 28 H 1.09004 * 109.47018 * 299.99367 * 11 10 8
29 29 H 1.08997 * 109.47462 * 59.99637 * 11 10 8
30 30 H 1.08994 * 109.46764 * 299.99819 * 12 11 10
31 31 H 1.08997 * 109.47008 * 59.99643 * 12 11 10
32 32 H 1.09003 * 109.47230 * 300.00483 * 13 12 11
33 33 H 1.09001 * 109.46922 * 59.99330 * 13 12 11
34 34 H 0.97001 * 119.99891 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2560 1.1011 0.0000
4 35 1.6487 2.8919 -0.0007
5 6 3.5539 0.7082 -0.0051
6 6 3.5794 -0.6893 -0.0031
7 6 2.2688 -1.1190 0.0034
8 6 1.8139 -2.5125 0.0068
9 8 0.6275 -2.7651 0.1051
10 7 2.7097 -3.5140 -0.0989
11 6 2.2668 -4.9066 0.0033
12 6 3.4713 -5.8375 -0.1504
13 6 3.0088 -7.2920 -0.0431
14 6 4.1952 -8.2088 -0.1938
15 1 5.1806 -7.7954 -0.3510
16 6 4.0228 -9.5754 -0.1323
17 7 5.0582 -10.3754 -0.2633
18 14 2.3184 -10.2903 0.1388
19 1 1.6619 -10.5163 -1.1739
20 1 2.4327 -11.5813 0.8639
21 1 1.5057 -9.3418 0.9419
22 1 -0.3634 -0.0554 1.0261
23 1 -0.3633 0.9163 -0.4651
24 1 -0.3633 -0.8610 -0.5610
25 1 4.4153 1.3596 -0.0097
26 1 4.4597 -1.3149 -0.0056
27 1 3.6476 -3.3127 -0.2427
28 1 1.8028 -5.0699 0.9761
29 1 1.5430 -5.1165 -0.7842
30 1 3.9348 -5.6741 -1.1233
31 1 4.1953 -5.6278 0.6369
32 1 2.5454 -7.4551 0.9300
33 1 2.2845 -7.5019 -0.8301
34 1 4.9368 -11.3369 -0.2204
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001191613513.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:10:36
Heat of formation + Delta-G solvation = 1.360335 kcal
Electronic energy + Delta-G solvation = -17455.783600 eV
Core-core repulsion = 14435.426284 eV
Total energy + Delta-G solvation = -3020.357315 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 314.037 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.71207 -39.12702 -35.65748 -33.70039 -33.03082 -32.19943 -31.47176 -29.03798
-26.94066 -26.84404 -23.46371 -22.08719 -20.78645 -20.58566 -19.46157 -18.02754
-16.76662 -16.13507 -16.07474 -15.47665 -15.21453 -14.37949 -14.04046 -13.84335
-13.83155 -13.47469 -12.93264 -12.83262 -12.72325 -12.39354 -12.08364 -11.96014
-11.25890 -11.12694 -10.92274 -10.89925 -10.32293 -10.03917 -9.84513 -9.69300
-9.25256 -9.16099 -9.03856 -8.57414 -8.46368 -6.07994 -4.06878 0.88632
1.07958 2.22304 2.39754 3.22431 3.29396 3.30256 3.37584 3.41197
4.42637 4.45952 4.60263 4.86544 4.94879 5.07517 5.25995 5.30925
5.47627 5.59562 5.63076 5.68620 5.95320 6.20024 6.24967 6.39646
6.51095 6.57036 6.63652 6.74157 7.19533 7.32958 7.49810 7.73990
8.13491 8.48339 8.95919 9.54104 11.05212
Molecular weight = 314.04amu
Principal moments of inertia in cm(-1)
A = 0.052455 B = 0.002272 C = 0.002184
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 533.667570 B =12321.317036 C =12819.054707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.062 3.938
2 N -0.394 5.394
3 C 0.021 3.979
4 Br 0.004 6.996
5 C -0.157 4.157
6 C -0.140 4.140
7 C -0.019 4.019
8 C 0.583 3.417
9 O -0.549 6.549
10 N -0.709 5.709
11 C 0.116 3.884
12 C -0.114 4.114
13 C -0.011 4.011
14 C -0.523 4.523
15 H 0.072 0.928
16 C 0.067 3.933
17 N -0.902 5.902
18 Si 0.880 3.120
19 H -0.277 1.277
20 H -0.288 1.288
21 H -0.264 1.264
22 H 0.083 0.917
23 H 0.085 0.915
24 H 0.107 0.893
25 H 0.153 0.847
26 H 0.156 0.844
27 H 0.404 0.596
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.062 0.938
31 H 0.062 0.938
32 H 0.019 0.981
33 H 0.014 0.986
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.766 29.761 0.410 30.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 N -0.068 5.068
3 C -0.173 4.173
4 Br 0.088 6.912
5 C -0.184 4.184
6 C -0.167 4.167
7 C -0.136 4.136
8 C 0.369 3.631
9 O -0.429 6.429
10 N -0.359 5.359
11 C -0.006 4.006
12 C -0.152 4.152
13 C -0.049 4.049
14 C -0.561 4.561
15 H 0.090 0.910
16 C -0.135 4.135
17 N -0.541 5.541
18 Si 0.707 3.293
19 H -0.203 1.203
20 H -0.214 1.214
21 H -0.189 1.189
22 H 0.102 0.898
23 H 0.104 0.896
24 H 0.125 0.875
25 H 0.171 0.829
26 H 0.174 0.826
27 H 0.238 0.762
28 H 0.085 0.915
29 H 0.086 0.914
30 H 0.081 0.919
31 H 0.081 0.919
32 H 0.037 0.963
33 H 0.033 0.967
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -8.209 30.000 0.494 31.106
hybrid contribution -0.259 -0.735 0.076 0.783
sum -8.468 29.265 0.571 30.471
Atomic orbital electron populations
1.22379 0.75368 1.05319 1.04818 1.43830 1.07086 1.03717 1.52180
1.22178 0.92289 0.85849 1.17004 1.96745 1.89800 1.06576 1.98102
1.20750 0.94053 0.95316 1.08245 1.21428 0.94896 0.94784 1.05566
1.20341 0.90262 0.87568 1.15384 1.16899 0.85867 0.83232 0.77099
1.90799 1.16164 1.84840 1.51101 1.45830 1.11085 1.06535 1.72469
1.21730 0.98878 0.77949 1.02048 1.21722 0.95478 0.96133 1.01861
1.19500 0.97530 0.91103 0.96742 1.21088 0.94485 0.90586 1.49896
0.90951 1.25029 0.96733 0.97183 0.94523 1.69907 1.29954 1.03718
1.50544 0.86779 0.85123 0.78611 0.78801 1.20251 1.21368 1.18905
0.89847 0.89630 0.87498 0.82917 0.82640 0.76155 0.91507 0.91436
0.91930 0.91897 0.96288 0.96723 0.92673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.59 10.26 59.85 0.61 1.21 16
2 N -0.39 -4.49 3.17 -118.26 -0.37 -4.86 16
3 C 0.02 0.21 7.27 -16.84 -0.12 0.09 16
4 Br 0.00 0.03 33.19 -68.01 -2.26 -2.22 16
5 C -0.16 -1.51 10.76 -39.95 -0.43 -1.94 16
6 C -0.14 -1.42 10.34 -39.13 -0.40 -1.83 16
7 C -0.02 -0.23 6.89 -81.94 -0.56 -0.80 16
8 C 0.58 8.36 7.77 -12.89 -0.10 8.26 16
9 O -0.55 -9.39 14.82 5.19 0.08 -9.32 16
10 N -0.71 -9.45 5.53 -61.65 -0.34 -9.79 16
11 C 0.12 1.84 5.68 -4.04 -0.02 1.81 16
12 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16
13 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16
14 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16
15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16
16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16
17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16
18 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16
19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16
22 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
23 H 0.09 0.64 7.48 -51.93 -0.39 0.25 16
24 H 0.11 1.16 6.64 -51.93 -0.34 0.81 16
25 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16
26 H 0.16 1.19 7.48 -52.49 -0.39 0.80 16
27 H 0.40 4.33 7.41 -40.82 -0.30 4.03 16
28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16
33 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16
34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
LS Contribution 311.14 15.07 4.69 4.69
Total: -1.00 -32.17 311.14 -8.13 -40.30
By element:
Atomic # 1 Polarization: 4.17 SS G_CDS: -4.32 Total: -0.15 kcal
Atomic # 6 Polarization: -7.02 SS G_CDS: -1.71 Total: -8.74 kcal
Atomic # 7 Polarization: -41.43 SS G_CDS: 0.06 Total: -41.38 kcal
Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.32 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal
Atomic # 35 Polarization: 0.03 SS G_CDS: -2.26 Total: -2.22 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -32.17 -8.13 -40.30 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191613513.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.664 kcal
(2) G-P(sol) polarization free energy of solvation -32.169 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.495 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds