Wall clock time and date at job start Tue Mar 31 2020 10:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35574 * 125.69262 * 2 1 4 4 Br 1.89096 * 125.57468 * 359.97438 * 3 2 1 5 5 C 1.35610 * 108.85067 * 180.22952 * 3 2 1 6 6 C 1.39767 * 107.88551 * 359.76764 * 5 3 2 7 7 C 1.37780 * 125.69201 * 179.82731 * 2 1 3 8 8 C 1.46588 * 126.22844 * 0.03738 * 7 2 1 9 9 O 1.21698 * 120.00229 * 354.65021 * 8 7 2 10 10 N 1.34779 * 119.99491 * 174.65320 * 8 7 2 11 11 C 1.46498 * 119.99690 * 175.50836 * 10 8 7 12 12 C 1.53004 * 109.47138 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47364 * 179.97438 * 12 11 10 14 14 C 1.50691 * 109.47344 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00473 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00259 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99327 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.46932 * 90.00380 * 18 16 14 20 20 H 1.48505 * 109.46708 * 209.99942 * 18 16 14 21 21 H 1.48494 * 109.47281 * 330.00087 * 18 16 14 22 22 H 1.08998 * 109.47393 * 266.90996 * 1 2 3 23 23 H 1.08996 * 109.47036 * 26.91192 * 1 2 3 24 24 H 1.09001 * 109.47114 * 146.91143 * 1 2 3 25 25 H 1.08005 * 126.05998 * 179.78630 * 5 3 2 26 26 H 1.07998 * 126.44624 * 180.02562 * 6 5 3 27 27 H 0.96995 * 120.00237 * 355.49780 * 10 8 7 28 28 H 1.09004 * 109.47018 * 299.99367 * 11 10 8 29 29 H 1.08997 * 109.47462 * 59.99637 * 11 10 8 30 30 H 1.08994 * 109.46764 * 299.99819 * 12 11 10 31 31 H 1.08997 * 109.47008 * 59.99643 * 12 11 10 32 32 H 1.09003 * 109.47230 * 300.00483 * 13 12 11 33 33 H 1.09001 * 109.46922 * 59.99330 * 13 12 11 34 34 H 0.97001 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1011 0.0000 4 35 1.6487 2.8919 -0.0007 5 6 3.5539 0.7082 -0.0051 6 6 3.5794 -0.6893 -0.0031 7 6 2.2688 -1.1190 0.0034 8 6 1.8139 -2.5125 0.0068 9 8 0.6275 -2.7651 0.1051 10 7 2.7097 -3.5140 -0.0989 11 6 2.2668 -4.9066 0.0033 12 6 3.4713 -5.8375 -0.1504 13 6 3.0088 -7.2920 -0.0431 14 6 4.1952 -8.2088 -0.1938 15 1 5.1806 -7.7954 -0.3510 16 6 4.0228 -9.5754 -0.1323 17 7 5.0582 -10.3754 -0.2633 18 14 2.3184 -10.2903 0.1388 19 1 1.6619 -10.5163 -1.1739 20 1 2.4327 -11.5813 0.8639 21 1 1.5057 -9.3418 0.9419 22 1 -0.3634 -0.0554 1.0261 23 1 -0.3633 0.9163 -0.4651 24 1 -0.3633 -0.8610 -0.5610 25 1 4.4153 1.3596 -0.0097 26 1 4.4597 -1.3149 -0.0056 27 1 3.6476 -3.3127 -0.2427 28 1 1.8028 -5.0699 0.9761 29 1 1.5430 -5.1165 -0.7842 30 1 3.9348 -5.6741 -1.1233 31 1 4.1953 -5.6278 0.6369 32 1 2.5454 -7.4551 0.9300 33 1 2.2845 -7.5019 -0.8301 34 1 4.9368 -11.3369 -0.2204 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191613513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:36 Heat of formation + Delta-G solvation = 1.360335 kcal Electronic energy + Delta-G solvation = -17455.783600 eV Core-core repulsion = 14435.426284 eV Total energy + Delta-G solvation = -3020.357315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71207 -39.12702 -35.65748 -33.70039 -33.03082 -32.19943 -31.47176 -29.03798 -26.94066 -26.84404 -23.46371 -22.08719 -20.78645 -20.58566 -19.46157 -18.02754 -16.76662 -16.13507 -16.07474 -15.47665 -15.21453 -14.37949 -14.04046 -13.84335 -13.83155 -13.47469 -12.93264 -12.83262 -12.72325 -12.39354 -12.08364 -11.96014 -11.25890 -11.12694 -10.92274 -10.89925 -10.32293 -10.03917 -9.84513 -9.69300 -9.25256 -9.16099 -9.03856 -8.57414 -8.46368 -6.07994 -4.06878 0.88632 1.07958 2.22304 2.39754 3.22431 3.29396 3.30256 3.37584 3.41197 4.42637 4.45952 4.60263 4.86544 4.94879 5.07517 5.25995 5.30925 5.47627 5.59562 5.63076 5.68620 5.95320 6.20024 6.24967 6.39646 6.51095 6.57036 6.63652 6.74157 7.19533 7.32958 7.49810 7.73990 8.13491 8.48339 8.95919 9.54104 11.05212 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.002272 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.667570 B =12321.317036 C =12819.054707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.394 5.394 3 C 0.021 3.979 4 Br 0.004 6.996 5 C -0.157 4.157 6 C -0.140 4.140 7 C -0.019 4.019 8 C 0.583 3.417 9 O -0.549 6.549 10 N -0.709 5.709 11 C 0.116 3.884 12 C -0.114 4.114 13 C -0.011 4.011 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.153 0.847 26 H 0.156 0.844 27 H 0.404 0.596 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 29.761 0.410 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.068 5.068 3 C -0.173 4.173 4 Br 0.088 6.912 5 C -0.184 4.184 6 C -0.167 4.167 7 C -0.136 4.136 8 C 0.369 3.631 9 O -0.429 6.429 10 N -0.359 5.359 11 C -0.006 4.006 12 C -0.152 4.152 13 C -0.049 4.049 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.125 0.875 25 H 0.171 0.829 26 H 0.174 0.826 27 H 0.238 0.762 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.209 30.000 0.494 31.106 hybrid contribution -0.259 -0.735 0.076 0.783 sum -8.468 29.265 0.571 30.471 Atomic orbital electron populations 1.22379 0.75368 1.05319 1.04818 1.43830 1.07086 1.03717 1.52180 1.22178 0.92289 0.85849 1.17004 1.96745 1.89800 1.06576 1.98102 1.20750 0.94053 0.95316 1.08245 1.21428 0.94896 0.94784 1.05566 1.20341 0.90262 0.87568 1.15384 1.16899 0.85867 0.83232 0.77099 1.90799 1.16164 1.84840 1.51101 1.45830 1.11085 1.06535 1.72469 1.21730 0.98878 0.77949 1.02048 1.21722 0.95478 0.96133 1.01861 1.19500 0.97530 0.91103 0.96742 1.21088 0.94485 0.90586 1.49896 0.90951 1.25029 0.96733 0.97183 0.94523 1.69907 1.29954 1.03718 1.50544 0.86779 0.85123 0.78611 0.78801 1.20251 1.21368 1.18905 0.89847 0.89630 0.87498 0.82917 0.82640 0.76155 0.91507 0.91436 0.91930 0.91897 0.96288 0.96723 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.26 59.85 0.61 1.21 16 2 N -0.39 -4.49 3.17 -118.26 -0.37 -4.86 16 3 C 0.02 0.21 7.27 -16.84 -0.12 0.09 16 4 Br 0.00 0.03 33.19 -68.01 -2.26 -2.22 16 5 C -0.16 -1.51 10.76 -39.95 -0.43 -1.94 16 6 C -0.14 -1.42 10.34 -39.13 -0.40 -1.83 16 7 C -0.02 -0.23 6.89 -81.94 -0.56 -0.80 16 8 C 0.58 8.36 7.77 -12.89 -0.10 8.26 16 9 O -0.55 -9.39 14.82 5.19 0.08 -9.32 16 10 N -0.71 -9.45 5.53 -61.65 -0.34 -9.79 16 11 C 0.12 1.84 5.68 -4.04 -0.02 1.81 16 12 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 13 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 14 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 0.64 7.48 -51.93 -0.39 0.25 16 24 H 0.11 1.16 6.64 -51.93 -0.34 0.81 16 25 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 26 H 0.16 1.19 7.48 -52.49 -0.39 0.80 16 27 H 0.40 4.33 7.41 -40.82 -0.30 4.03 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -32.17 311.14 -8.13 -40.30 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.32 Total: -0.15 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.71 Total: -8.74 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.06 Total: -41.38 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.26 Total: -2.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.17 -8.13 -40.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191613513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.664 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds