Wall clock time and date at job start Tue Mar 31 2020 10:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35574 * 125.69262 * 2 1 4 4 Br 1.89096 * 125.57468 * 359.97438 * 3 2 1 5 5 C 1.35610 * 108.85067 * 180.22952 * 3 2 1 6 6 C 1.39767 * 107.88551 * 359.76764 * 5 3 2 7 7 C 1.37780 * 125.69201 * 179.82731 * 2 1 3 8 8 C 1.46588 * 126.22844 * 0.03738 * 7 2 1 9 9 O 1.21698 * 120.00229 * 354.65021 * 8 7 2 10 10 N 1.34779 * 119.99491 * 174.65320 * 8 7 2 11 11 C 1.46498 * 119.99690 * 175.50836 * 10 8 7 12 12 C 1.53004 * 109.47138 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47364 * 179.97438 * 12 11 10 14 14 C 1.50691 * 109.47344 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00473 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00259 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99327 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.46932 * 90.00380 * 18 16 14 20 20 H 1.48505 * 109.46708 * 209.99942 * 18 16 14 21 21 H 1.48494 * 109.47281 * 330.00087 * 18 16 14 22 22 H 1.08998 * 109.47393 * 266.90996 * 1 2 3 23 23 H 1.08996 * 109.47036 * 26.91192 * 1 2 3 24 24 H 1.09001 * 109.47114 * 146.91143 * 1 2 3 25 25 H 1.08005 * 126.05998 * 179.78630 * 5 3 2 26 26 H 1.07998 * 126.44624 * 180.02562 * 6 5 3 27 27 H 0.96995 * 120.00237 * 355.49780 * 10 8 7 28 28 H 1.09004 * 109.47018 * 299.99367 * 11 10 8 29 29 H 1.08997 * 109.47462 * 59.99637 * 11 10 8 30 30 H 1.08994 * 109.46764 * 299.99819 * 12 11 10 31 31 H 1.08997 * 109.47008 * 59.99643 * 12 11 10 32 32 H 1.09003 * 109.47230 * 300.00483 * 13 12 11 33 33 H 1.09001 * 109.46922 * 59.99330 * 13 12 11 34 34 H 0.97001 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1011 0.0000 4 35 1.6487 2.8919 -0.0007 5 6 3.5539 0.7082 -0.0051 6 6 3.5794 -0.6893 -0.0031 7 6 2.2688 -1.1190 0.0034 8 6 1.8139 -2.5125 0.0068 9 8 0.6275 -2.7651 0.1051 10 7 2.7097 -3.5140 -0.0989 11 6 2.2668 -4.9066 0.0033 12 6 3.4713 -5.8375 -0.1504 13 6 3.0088 -7.2920 -0.0431 14 6 4.1952 -8.2088 -0.1938 15 1 5.1806 -7.7954 -0.3510 16 6 4.0228 -9.5754 -0.1323 17 7 5.0582 -10.3754 -0.2633 18 14 2.3184 -10.2903 0.1388 19 1 1.6619 -10.5163 -1.1739 20 1 2.4327 -11.5813 0.8639 21 1 1.5057 -9.3418 0.9419 22 1 -0.3634 -0.0554 1.0261 23 1 -0.3633 0.9163 -0.4651 24 1 -0.3633 -0.8610 -0.5610 25 1 4.4153 1.3596 -0.0097 26 1 4.4597 -1.3149 -0.0056 27 1 3.6476 -3.3127 -0.2427 28 1 1.8028 -5.0699 0.9761 29 1 1.5430 -5.1165 -0.7842 30 1 3.9348 -5.6741 -1.1233 31 1 4.1953 -5.6278 0.6369 32 1 2.5454 -7.4551 0.9300 33 1 2.2845 -7.5019 -0.8301 34 1 4.9368 -11.3369 -0.2204 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191613513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:36 Heat of formation + Delta-G solvation = -19.330904 kcal Electronic energy + Delta-G solvation = -17456.680839 eV Core-core repulsion = 14435.426284 eV Total energy + Delta-G solvation = -3021.254555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.53487 -40.23115 -37.03321 -35.26364 -34.12169 -33.31432 -32.79159 -30.15686 -28.41233 -27.61701 -24.95801 -23.21472 -22.21404 -21.59330 -20.48992 -19.11721 -18.70398 -17.18791 -17.06847 -16.57269 -16.38789 -16.13474 -15.30007 -15.04541 -14.77190 -14.59618 -14.36610 -13.79736 -13.68871 -13.63192 -13.54793 -13.13734 -12.72924 -12.69333 -11.96969 -11.92597 -11.77587 -11.58408 -11.57406 -11.31601 -11.12593 -10.74688 -10.20742 -9.92485 -9.28395 -8.27786 -6.31482 0.14358 0.19397 1.38148 1.39835 1.43848 1.51336 1.57555 2.23013 2.28843 2.37661 3.08165 3.63319 3.75857 4.07212 4.12927 4.21156 4.22395 4.36727 4.51374 4.56429 4.84636 4.89958 4.94307 4.97827 5.05450 5.31303 5.44168 5.52043 5.57888 5.66942 5.75257 5.79672 6.29300 6.46875 6.77005 7.08186 7.33306 8.88609 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.052455 B = 0.002272 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.667570 B =12321.317036 C =12819.054707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.403 5.403 3 C 0.017 3.983 4 Br 0.024 6.976 5 C -0.162 4.162 6 C -0.127 4.127 7 C -0.051 4.051 8 C 0.583 3.417 9 O -0.584 6.584 10 N -0.701 5.701 11 C 0.130 3.870 12 C -0.101 4.101 13 C -0.012 4.012 14 C -0.529 4.529 15 H 0.038 0.962 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.246 1.246 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.177 0.823 26 H 0.179 0.821 27 H 0.417 0.583 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 31.535 0.605 32.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.078 5.078 3 C -0.177 4.177 4 Br 0.107 6.893 5 C -0.189 4.189 6 C -0.154 4.154 7 C -0.166 4.166 8 C 0.371 3.629 9 O -0.466 6.466 10 N -0.352 5.352 11 C 0.007 3.993 12 C -0.139 4.139 13 C -0.050 4.050 14 C -0.568 4.568 15 H 0.057 0.943 16 C -0.193 4.193 17 N -0.592 5.592 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.170 1.170 22 H 0.104 0.896 23 H 0.123 0.877 24 H 0.109 0.891 25 H 0.194 0.806 26 H 0.196 0.804 27 H 0.254 0.746 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.972 31.802 0.686 33.050 hybrid contribution 0.077 -1.161 -0.001 1.163 sum -8.895 30.641 0.685 31.913 Atomic orbital electron populations 1.22408 0.74933 1.05594 1.04951 1.43994 1.07594 1.03840 1.52341 1.22584 0.92694 0.86532 1.15938 1.96769 1.89701 1.04779 1.98010 1.21120 0.94601 0.95415 1.07734 1.21796 0.94721 0.95430 1.03458 1.20176 0.91338 0.86815 1.18313 1.17159 0.85356 0.84146 0.76226 1.90777 1.17566 1.85456 1.52777 1.45606 1.11809 1.05450 1.72308 1.21372 0.97483 0.78863 1.01623 1.21491 0.96317 0.93760 1.02325 1.19467 0.95631 0.93059 0.96885 1.21474 0.94879 0.91565 1.48840 0.94324 1.25987 1.01025 0.97812 0.94476 1.70057 1.32547 1.04148 1.52417 0.85705 0.80018 0.77962 0.79262 1.19321 1.21194 1.16983 0.89583 0.87663 0.89088 0.80609 0.80364 0.74569 0.91956 0.91992 0.91544 0.91427 0.95995 0.96170 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 10.26 127.77 1.31 2.45 16 2 N -0.40 -8.66 3.17 -528.05 -1.67 -10.34 16 3 C 0.02 0.32 7.27 83.51 0.61 0.92 16 4 Br 0.02 0.34 33.19 -20.37 -0.68 -0.34 16 5 C -0.16 -2.69 10.76 22.03 0.24 -2.46 16 6 C -0.13 -2.28 10.34 22.56 0.23 -2.05 16 7 C -0.05 -1.18 6.89 40.31 0.28 -0.90 16 8 C 0.58 16.23 7.77 86.42 0.67 16.90 16 9 O -0.58 -19.86 14.82 -4.34 -0.06 -19.93 16 10 N -0.70 -17.67 5.53 -467.16 -2.58 -20.25 16 11 C 0.13 3.92 5.68 86.38 0.49 4.42 16 12 C -0.10 -3.49 5.27 30.59 0.16 -3.33 16 13 C -0.01 -0.55 4.04 29.84 0.12 -0.43 16 14 C -0.53 -29.60 9.66 25.60 0.25 -29.35 16 15 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 16 C 0.00 0.22 5.47 84.66 0.46 0.68 16 17 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 18 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 22 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.10 1.43 7.48 -2.39 -0.02 1.41 16 24 H 0.09 1.99 6.64 -2.39 -0.02 1.97 16 25 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 26 H 0.18 2.19 7.48 -2.91 -0.02 2.17 16 27 H 0.42 8.12 7.41 -92.71 -0.69 7.43 16 28 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 33 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -69.42 311.14 2.38 -67.04 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.37 Total: 9.95 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.82 Total: -13.16 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -3.96 Total: -89.34 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.93 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Atomic # 35 Polarization: 0.34 SS G_CDS: -0.68 Total: -0.34 kcal Total: -69.42 2.38 -67.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191613513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.714 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds