Wall clock time and date at job start Tue Mar 31 2020 10:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99688 * 2 1 4 4 H 1.48497 * 109.47578 * 270.00146 * 3 2 1 5 5 H 1.48503 * 109.47264 * 30.00724 * 3 2 1 6 6 H 1.48501 * 109.46955 * 150.00052 * 3 2 1 7 7 C 1.37873 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99316 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.53499 * 114.20614 * 180.02562 * 9 7 2 11 11 N 1.47068 * 87.98497 * 220.14731 * 10 9 7 12 12 C 1.34779 * 136.05604 * 207.08823 * 11 10 9 13 13 S 1.71196 * 119.99883 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99729 * 179.97438 * 12 11 10 15 15 C 1.40000 * 119.99996 * 185.53247 * 14 12 11 16 16 C 1.38870 * 120.04543 * 221.89842 * 15 14 12 17 17 C 1.38110 * 119.98038 * 179.97438 * 16 15 14 18 18 C 1.38463 * 120.05861 * 359.74526 * 17 16 15 19 19 F 1.35102 * 119.96235 * 180.25355 * 18 17 16 20 20 C 1.38567 * 120.07719 * 0.51088 * 18 17 16 21 21 Cl 1.73603 * 119.98597 * 179.76820 * 20 18 17 22 22 C 1.38233 * 120.02194 * 359.48950 * 20 18 17 23 23 C 1.47068 * 87.88511 * 27.34076 * 11 10 9 24 24 H 0.96996 * 120.00374 * 359.97438 * 1 2 3 25 25 H 1.08995 * 113.28437 * 313.06283 * 9 7 2 26 26 H 1.09002 * 113.46950 * 105.36677 * 10 9 7 27 27 H 1.09005 * 113.52151 * 334.93358 * 10 9 7 28 28 H 0.97001 * 120.00211 * 5.53606 * 14 12 11 29 29 H 1.08003 * 120.00826 * 0.02562 * 16 15 14 30 30 H 1.08002 * 119.97043 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.02587 * 180.23477 * 22 20 18 32 32 H 1.09000 * 113.46538 * 87.43712 * 23 11 10 33 33 H 1.08994 * 113.46837 * 217.87651 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1490 -3.7441 -0.0005 11 7 1.2075 -4.3593 -0.9482 12 6 0.8321 -5.6140 -1.2668 13 16 1.5334 -6.9491 -0.4566 14 7 -0.0955 -5.8174 -2.2233 15 6 -0.5702 -7.1103 -2.4742 16 6 -0.7594 -7.5400 -3.7812 17 6 -1.2273 -8.8159 -4.0273 18 6 -1.5030 -9.6691 -2.9721 19 9 -1.9557 -10.9185 -3.2152 20 6 -1.3201 -9.2410 -1.6669 21 17 -1.6722 -10.3106 -0.3456 22 6 -0.8519 -7.9646 -1.4168 23 6 0.8605 -3.0033 -1.3996 24 1 -0.4850 0.8400 0.0004 25 1 0.4440 -2.5306 0.7312 26 1 2.1880 -4.2512 0.9636 27 1 3.1377 -3.5675 -0.4240 28 1 -0.4341 -5.0680 -2.7378 29 1 -0.5400 -6.8769 -4.6049 30 1 -1.3740 -9.1501 -5.0437 31 1 -0.7058 -7.6323 -0.3997 32 1 1.5094 -2.6304 -2.1921 33 1 -0.1981 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200576677.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:27 Heat of formation + Delta-G solvation = 33.409594 kcal Electronic energy + Delta-G solvation = -20384.620687 eV Core-core repulsion = 16899.373384 eV Total energy + Delta-G solvation = -3485.247303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.035 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.04470 -40.32184 -39.30615 -36.94080 -36.09986 -33.08704 -31.18153 -30.95873 -28.58881 -26.05433 -25.50038 -23.80273 -22.74569 -21.96960 -19.81359 -18.53003 -17.83833 -17.61880 -17.05276 -16.57979 -15.98406 -15.83219 -15.02987 -14.87289 -14.56165 -14.10721 -13.85269 -13.67803 -13.34156 -13.13160 -12.85270 -12.45829 -11.98956 -11.91081 -11.59566 -11.32362 -11.24183 -11.02547 -10.98437 -10.82693 -10.59115 -9.69326 -9.61371 -9.44382 -9.09679 -8.83695 -8.23455 -7.47228 -7.02095 -6.43707 -4.51617 0.65702 0.95585 1.70728 1.92672 2.09820 2.68045 3.08996 3.18345 3.20715 3.29703 3.37534 3.96935 4.13664 4.46254 4.76362 4.82308 4.93297 5.12155 5.33033 5.55856 5.62901 5.72366 5.75130 5.84653 5.93479 6.03276 6.06302 6.14996 6.28902 6.33197 6.78766 6.86639 7.21234 7.53392 7.74907 7.84805 8.53944 9.17656 10.65652 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.002857 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.149645 B = 9798.277632 C =10132.443891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.043 3.957 10 C 0.113 3.887 11 N -0.581 5.581 12 C 0.585 3.415 13 S -0.669 6.669 14 N -0.643 5.643 15 C 0.150 3.850 16 C -0.098 4.098 17 C -0.137 4.137 18 C 0.103 3.897 19 F -0.130 7.130 20 C -0.065 4.065 21 Cl -0.048 7.048 22 C -0.038 4.038 23 C 0.074 3.926 24 H 0.267 0.733 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.410 0.590 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.091 0.909 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 -11.256 -8.196 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.560 4.560 8 H 0.086 0.914 9 C 0.023 3.977 10 C -0.008 4.008 11 N -0.285 5.285 12 C 0.226 3.774 13 S -0.535 6.535 14 N -0.271 5.271 15 C 0.055 3.945 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.082 3.918 19 F -0.108 7.108 20 C -0.095 4.095 21 Cl -0.019 7.019 22 C -0.061 4.061 23 C -0.050 4.050 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.248 0.752 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.182 0.818 32 H 0.109 0.891 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.498 -12.167 -7.513 14.991 hybrid contribution -0.158 1.596 -0.808 1.796 sum -4.656 -10.571 -8.320 14.236 Atomic orbital electron populations 1.69930 1.06174 1.27664 1.48104 1.25049 0.94923 0.99712 0.93716 0.86452 0.79977 0.82467 0.78399 1.20387 1.20942 1.19444 1.20828 0.93184 0.88947 1.53007 0.91351 1.20391 0.94934 0.91267 0.91081 1.23832 0.94015 0.91522 0.91419 1.49581 1.39597 1.02153 1.37153 1.21775 0.82920 0.88646 0.84026 1.93322 1.68159 1.29074 1.62988 1.42006 1.40160 1.08466 1.36469 1.17171 0.99381 0.84993 0.92967 1.20807 1.00328 0.95802 0.95032 1.20743 1.03155 0.93208 0.98585 1.17390 1.01287 0.81076 0.92051 1.91521 1.86427 1.37911 1.94961 1.20608 1.07280 0.93777 0.87790 1.98381 1.93324 1.63952 1.46236 1.21262 0.92013 0.91033 1.01840 1.24373 1.00916 0.75556 1.04168 0.92292 0.90628 0.90091 0.89067 0.75168 0.84218 0.83498 0.81764 0.89081 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.01 13.26 55.43 0.74 -21.27 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 18.56 29.54 -169.99 -5.02 13.54 16 4 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.52 -11.87 8.83 -34.44 -0.30 -12.18 16 8 H 0.07 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.04 0.87 3.79 -91.12 -0.35 0.53 16 10 C 0.11 2.03 7.91 -8.50 -0.07 1.96 16 11 N -0.58 -9.95 3.69 -187.09 -0.69 -10.64 16 12 C 0.58 9.91 7.88 -86.91 -0.68 9.23 16 13 S -0.67 -13.39 26.41 -107.50 -2.84 -16.23 16 14 N -0.64 -8.61 5.33 -11.39 -0.06 -8.68 16 15 C 0.15 1.93 5.91 -83.67 -0.49 1.44 16 16 C -0.10 -0.99 9.97 -39.39 -0.39 -1.38 16 17 C -0.14 -1.33 10.02 -39.55 -0.40 -1.73 16 18 C 0.10 1.24 7.27 -39.38 -0.29 0.95 16 19 F -0.13 -1.59 16.83 2.25 0.04 -1.55 16 20 C -0.06 -0.87 6.32 -39.46 -0.25 -1.12 16 21 Cl -0.05 -0.64 28.61 -51.86 -1.48 -2.12 16 22 C -0.04 -0.54 7.64 -39.36 -0.30 -0.84 16 23 C 0.07 1.29 7.88 -8.37 -0.07 1.22 16 24 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 25 H 0.08 1.71 8.11 -51.93 -0.42 1.29 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 28 H 0.41 4.48 8.55 -40.82 -0.35 4.13 16 29 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.17 2.69 6.27 -49.94 -0.31 2.37 16 32 H 0.09 1.53 8.10 -51.93 -0.42 1.11 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -26.85 321.51 -11.32 -38.17 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.16 Total: 4.26 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -3.68 Total: -0.34 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.02 Total: -40.58 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 16 Polarization: -13.39 SS G_CDS: -2.84 Total: -16.23 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.85 -11.32 -38.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200576677.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.579 kcal (2) G-P(sol) polarization free energy of solvation -26.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds