Wall clock time and date at job start Tue Mar 31 2020 10:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86795 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47412 * 240.00707 * 3 2 1 5 5 H 1.48505 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46924 * 120.00573 * 3 2 1 7 7 C 1.39929 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99751 * 197.79779 * 7 2 1 9 9 C 1.41322 * 120.00305 * 17.79287 * 7 2 1 10 10 C 1.40795 * 120.20377 * 24.63015 * 9 7 2 11 11 C 1.37617 * 120.01685 * 180.02562 * 10 9 7 12 12 C 1.38514 * 120.45503 * 359.97438 * 11 10 9 13 13 C 1.39556 * 120.41585 * 359.97438 * 12 11 10 14 14 C 1.48348 * 120.01203 * 180.02562 * 13 12 11 15 15 C 1.39556 * 120.10972 * 90.00489 * 14 13 12 16 16 F 1.35098 * 120.04306 * 359.97438 * 15 14 13 17 17 C 1.38198 * 119.91627 * 180.27570 * 15 14 13 18 18 C 1.38517 * 120.14068 * 359.50999 * 17 15 14 19 19 F 1.35097 * 119.89064 * 180.21664 * 18 17 15 20 20 C 1.38659 * 120.22392 * 0.46473 * 18 17 15 21 21 F 1.35101 * 119.96150 * 179.76639 * 20 18 17 22 22 C 1.38402 * 120.08183 * 359.79402 * 20 18 17 23 23 F 1.35104 * 120.06917 * 179.97438 * 22 20 18 24 24 C 1.39117 * 119.96960 * 0.29614 * 13 12 11 25 25 F 1.35105 * 120.22259 * 179.72280 * 24 13 12 26 26 H 0.96994 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.98851 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.76735 * 180.02562 * 11 10 9 29 29 H 1.08002 * 119.78686 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.92720 * 179.72245 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0964 1.6962 1.2124 7 6 2.0082 -1.2118 -0.0005 8 1 3.0494 -1.2343 0.2853 9 6 1.3523 -2.4063 -0.3751 10 6 0.2228 -2.3610 -1.2144 11 6 -0.4133 -3.5265 -1.5762 12 6 0.0500 -4.7497 -1.1206 13 6 1.1686 -4.8163 -0.2888 14 6 1.6575 -6.1313 0.1935 15 6 2.6033 -6.8412 -0.5475 16 9 3.0754 -6.3322 -1.7065 17 6 3.0517 -8.0685 -0.0974 18 6 2.5719 -8.5906 1.0925 19 9 3.0170 -9.7887 1.5300 20 6 1.6326 -7.8899 1.8337 21 9 1.1648 -8.4062 2.9912 22 6 1.1731 -6.6625 1.3889 23 9 0.2575 -5.9803 2.1110 24 6 1.8216 -3.6486 0.0925 25 9 2.9016 -3.7067 0.9021 26 1 -0.4850 0.8400 0.0004 27 1 -0.1446 -1.4113 -1.5742 28 1 -1.2791 -3.4870 -2.2205 29 1 -0.4571 -5.6578 -1.4117 30 1 3.7802 -8.6201 -0.6730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205173151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:57 Heat of formation + Delta-G solvation = -181.974319 kcal Electronic energy + Delta-G solvation = -25406.862231 eV Core-core repulsion = 20774.345362 eV Total energy + Delta-G solvation = -4632.516869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.042 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.78236 -49.16839 -48.96422 -48.41449 -47.43239 -38.75027 -37.25409 -34.08176 -31.79578 -30.30820 -29.80307 -28.06167 -25.50677 -23.71429 -23.18401 -21.10480 -20.78460 -18.69875 -18.39041 -17.99875 -17.06571 -16.87703 -16.21341 -16.15832 -15.88332 -15.64820 -15.45633 -15.27744 -15.01949 -14.83233 -14.64618 -14.42618 -14.33955 -14.14212 -13.44130 -13.00507 -12.81764 -12.30896 -12.09349 -11.94754 -11.71937 -11.64278 -11.26775 -11.17617 -10.89711 -10.59319 -10.05957 -9.85084 -9.37342 -8.97371 -8.71779 -7.76835 -7.55214 -6.97400 -4.57471 0.51551 0.56841 2.34085 2.52897 2.87455 2.98167 3.00590 3.06361 3.17092 3.79651 3.80996 4.02237 4.20258 4.26532 4.37253 4.63347 5.21422 5.25623 5.38467 5.58497 5.64335 5.68550 5.78634 6.07781 6.35338 6.47116 6.68407 6.84975 6.98983 7.21954 7.35653 7.68916 7.77398 7.87555 8.33615 8.56077 8.62725 9.96499 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.004124 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.277051 B = 6787.937348 C = 6894.615309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.086 3.914 10 C -0.134 4.134 11 C -0.109 4.109 12 C -0.191 4.191 13 C -0.081 4.081 14 C -0.065 4.065 15 C 0.166 3.834 16 F -0.107 7.107 17 C -0.177 4.177 18 C 0.118 3.882 19 F -0.116 7.116 20 C 0.019 3.981 21 F -0.116 7.116 22 C 0.141 3.859 23 F -0.100 7.100 24 C 0.001 3.999 25 F -0.157 7.157 26 H 0.286 0.714 27 H 0.129 0.871 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -10.508 -1.101 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.479 4.479 8 H 0.103 0.897 9 C 0.083 3.917 10 C -0.153 4.153 11 C -0.127 4.127 12 C -0.210 4.210 13 C -0.082 4.082 14 C -0.067 4.067 15 C 0.146 3.854 16 F -0.085 7.085 17 C -0.197 4.197 18 C 0.098 3.902 19 F -0.094 7.094 20 C -0.003 4.003 21 F -0.095 7.095 22 C 0.121 3.879 23 F -0.078 7.078 24 C -0.019 4.019 25 F -0.136 7.136 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.106 -10.355 -0.998 10.614 hybrid contribution 0.365 0.581 0.492 0.844 sum 2.471 -9.773 -0.506 10.094 Atomic orbital electron populations 1.69791 1.07669 1.29979 1.33534 1.25931 0.94801 1.01610 0.91921 0.86237 0.80123 0.79458 0.80305 1.18532 1.20084 1.18743 1.19503 0.98487 0.90839 1.39094 0.89733 1.17525 0.92737 0.90461 0.90974 1.21310 0.97669 0.97545 0.98798 1.20635 0.99239 0.92545 1.00308 1.20142 0.98555 0.97140 1.05192 1.17780 0.99422 0.87383 1.03625 1.18903 0.97426 0.97130 0.93263 1.16948 0.93791 0.91188 0.83522 1.91595 1.86071 1.86563 1.44308 1.20840 1.05168 0.96670 0.97011 1.16752 0.96424 0.83089 0.93953 1.91562 1.87582 1.41231 1.89054 1.17366 1.01512 0.94351 0.87026 1.91552 1.87155 1.86104 1.44677 1.17048 0.91079 0.89012 0.90798 1.91620 1.62286 1.78276 1.75611 1.17736 0.90554 0.93459 1.00180 1.91290 1.53446 1.97206 1.71622 0.90304 0.85314 0.88065 0.88187 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.13 10.96 55.55 0.61 -18.52 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.92 17.90 29.59 -169.99 -5.03 12.87 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.45 -11.64 8.78 -37.78 -0.33 -11.97 16 8 H 0.08 2.16 7.74 -52.49 -0.41 1.75 16 9 C 0.09 2.22 5.57 -106.80 -0.60 1.63 16 10 C -0.13 -3.23 8.69 -38.84 -0.34 -3.56 16 11 C -0.11 -2.33 10.01 -39.71 -0.40 -2.72 16 12 C -0.19 -3.96 9.78 -38.99 -0.38 -4.34 16 13 C -0.08 -1.76 4.58 -104.92 -0.48 -2.24 16 14 C -0.07 -1.19 4.93 -104.78 -0.52 -1.71 16 15 C 0.17 2.58 7.27 -39.10 -0.28 2.30 16 16 F -0.11 -1.77 16.82 2.25 0.04 -1.73 16 17 C -0.18 -2.17 9.99 -39.49 -0.39 -2.57 16 18 C 0.12 1.55 7.30 -39.32 -0.29 1.26 16 19 F -0.12 -1.44 17.17 2.25 0.04 -1.40 16 20 C 0.02 0.28 7.30 -39.37 -0.29 0.00 16 21 F -0.12 -1.78 17.09 2.25 0.04 -1.74 16 22 C 0.14 2.46 7.28 -39.05 -0.28 2.17 16 23 F -0.10 -1.92 16.73 2.25 0.04 -1.88 16 24 C 0.00 0.02 7.28 -38.29 -0.28 -0.25 16 25 F -0.16 -3.86 16.27 2.25 0.04 -3.82 16 26 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 27 H 0.13 3.15 6.16 -52.49 -0.32 2.82 16 28 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 296.21 15.07 4.46 4.46 Total: -1.00 -25.97 296.21 -5.85 -31.82 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -1.13 Total: 0.21 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -4.95 Total: -20.26 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.61 Total: -18.52 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 0.19 Total: -10.58 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.97 -5.85 -31.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205173151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.157 kcal (2) G-P(sol) polarization free energy of solvation -25.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds