Wall clock time and date at job start Tue Mar 31 2020 10:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86795 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47412 * 240.00707 * 3 2 1 5 5 H 1.48505 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46924 * 120.00573 * 3 2 1 7 7 C 1.39929 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99751 * 197.79779 * 7 2 1 9 9 C 1.41322 * 120.00305 * 17.79287 * 7 2 1 10 10 C 1.40795 * 120.20377 * 24.63015 * 9 7 2 11 11 C 1.37617 * 120.01685 * 180.02562 * 10 9 7 12 12 C 1.38514 * 120.45503 * 359.97438 * 11 10 9 13 13 C 1.39556 * 120.41585 * 359.97438 * 12 11 10 14 14 C 1.48348 * 120.01203 * 180.02562 * 13 12 11 15 15 C 1.39556 * 120.10972 * 90.00489 * 14 13 12 16 16 F 1.35098 * 120.04306 * 359.97438 * 15 14 13 17 17 C 1.38198 * 119.91627 * 180.27570 * 15 14 13 18 18 C 1.38517 * 120.14068 * 359.50999 * 17 15 14 19 19 F 1.35097 * 119.89064 * 180.21664 * 18 17 15 20 20 C 1.38659 * 120.22392 * 0.46473 * 18 17 15 21 21 F 1.35101 * 119.96150 * 179.76639 * 20 18 17 22 22 C 1.38402 * 120.08183 * 359.79402 * 20 18 17 23 23 F 1.35104 * 120.06917 * 179.97438 * 22 20 18 24 24 C 1.39117 * 119.96960 * 0.29614 * 13 12 11 25 25 F 1.35105 * 120.22259 * 179.72280 * 24 13 12 26 26 H 0.96994 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.98851 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.76735 * 180.02562 * 11 10 9 29 29 H 1.08002 * 119.78686 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.92720 * 179.72245 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2775 2.7464 0.0006 6 1 3.0964 1.6962 1.2124 7 6 2.0082 -1.2118 -0.0005 8 1 3.0494 -1.2343 0.2853 9 6 1.3523 -2.4063 -0.3751 10 6 0.2228 -2.3610 -1.2144 11 6 -0.4133 -3.5265 -1.5762 12 6 0.0500 -4.7497 -1.1206 13 6 1.1686 -4.8163 -0.2888 14 6 1.6575 -6.1313 0.1935 15 6 2.6033 -6.8412 -0.5475 16 9 3.0754 -6.3322 -1.7065 17 6 3.0517 -8.0685 -0.0974 18 6 2.5719 -8.5906 1.0925 19 9 3.0170 -9.7887 1.5300 20 6 1.6326 -7.8899 1.8337 21 9 1.1648 -8.4062 2.9912 22 6 1.1731 -6.6625 1.3889 23 9 0.2575 -5.9803 2.1110 24 6 1.8216 -3.6486 0.0925 25 9 2.9016 -3.7067 0.9021 26 1 -0.4850 0.8400 0.0004 27 1 -0.1446 -1.4113 -1.5742 28 1 -1.2791 -3.4870 -2.2205 29 1 -0.4571 -5.6578 -1.4117 30 1 3.7802 -8.6201 -0.6730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205173151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:57 Heat of formation + Delta-G solvation = -192.570282 kcal Electronic energy + Delta-G solvation = -25407.321706 eV Core-core repulsion = 20774.345362 eV Total energy + Delta-G solvation = -4632.976344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.042 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.98049 -50.40384 -50.22689 -49.66275 -49.30996 -40.10039 -38.90078 -35.83578 -33.29007 -31.62347 -31.49175 -29.58970 -27.33924 -25.06158 -24.42219 -22.84297 -22.45417 -19.94978 -19.63026 -19.52333 -18.52773 -18.13315 -18.00568 -17.42868 -17.25421 -17.16019 -16.72242 -16.68407 -16.48114 -16.21489 -16.08381 -16.01486 -15.74498 -15.56112 -15.03060 -14.67756 -14.13960 -13.89390 -13.65134 -13.50993 -13.30641 -13.10249 -12.77979 -12.68852 -12.54333 -12.19719 -11.83447 -11.58452 -11.13976 -10.20664 -9.95812 -9.57202 -9.34819 -8.75816 -6.48128 -0.70631 -0.62694 0.58643 0.75915 1.36665 1.46375 1.50157 1.66477 1.96506 2.16961 2.52823 2.63329 2.80903 2.98501 3.05326 3.33723 3.48925 3.86655 4.08397 4.13412 4.32154 4.41969 4.47432 4.60380 4.65773 4.86954 5.06018 5.18369 5.28479 5.46603 5.58197 5.90358 5.92567 6.06476 6.47018 6.70752 6.77951 8.20680 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.004124 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.277051 B = 6787.937348 C = 6894.615309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.042 3.958 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.071 0.929 9 C 0.057 3.943 10 C -0.154 4.154 11 C -0.105 4.105 12 C -0.186 4.186 13 C -0.075 4.075 14 C -0.092 4.092 15 C 0.163 3.837 16 F -0.114 7.114 17 C -0.141 4.141 18 C 0.139 3.861 19 F -0.104 7.104 20 C 0.023 3.977 21 F -0.118 7.118 22 C 0.125 3.875 23 F -0.119 7.119 24 C -0.034 4.034 25 F -0.166 7.166 26 H 0.295 0.705 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -12.275 -1.820 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.175 4.175 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.521 4.521 8 H 0.089 0.911 9 C 0.054 3.946 10 C -0.174 4.174 11 C -0.123 4.123 12 C -0.205 4.205 13 C -0.076 4.076 14 C -0.094 4.094 15 C 0.143 3.857 16 F -0.092 7.092 17 C -0.160 4.160 18 C 0.118 3.882 19 F -0.082 7.082 20 C 0.002 3.998 21 F -0.096 7.096 22 C 0.104 3.896 23 F -0.098 7.098 24 C -0.054 4.054 25 F -0.145 7.145 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.561 -12.145 -1.719 12.531 hybrid contribution 0.196 0.915 0.717 1.179 sum 2.757 -11.230 -1.001 11.607 Atomic orbital electron populations 1.69812 1.08808 1.31340 1.33769 1.26707 0.95576 1.04344 0.90898 0.85212 0.78901 0.75351 0.80095 1.18140 1.18364 1.18890 1.19657 0.98329 0.92431 1.41679 0.91061 1.17901 0.93742 0.91199 0.91731 1.21321 0.98086 0.98291 0.99653 1.21008 0.99579 0.91864 0.99829 1.20617 0.97925 0.98165 1.03842 1.18063 0.98784 0.88316 1.02410 1.18809 0.99609 0.96379 0.94612 1.17001 0.93460 0.92041 0.83215 1.91584 1.86091 1.86886 1.44666 1.21115 1.04002 0.94831 0.96089 1.16656 0.95120 0.82917 0.93491 1.91609 1.87218 1.40486 1.88923 1.17366 1.01695 0.93713 0.87060 1.91551 1.87281 1.85943 1.44869 1.17106 0.91685 0.89959 0.90825 1.91564 1.63169 1.78937 1.76097 1.18062 0.91387 0.94501 1.01459 1.91241 1.53939 1.97279 1.72031 0.89392 0.86287 0.84793 0.84911 0.77399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.63 10.96 21.83 0.24 -40.40 16 2 C 0.04 2.05 5.14 85.25 0.44 2.48 16 3 Si 0.98 37.34 29.59 68.60 2.03 39.37 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.49 -26.76 8.78 23.44 0.21 -26.55 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.06 3.09 5.57 -21.27 -0.12 2.97 16 10 C -0.15 -7.65 8.69 22.75 0.20 -7.45 16 11 C -0.10 -4.42 10.01 22.19 0.22 -4.20 16 12 C -0.19 -7.55 9.78 22.65 0.22 -7.33 16 13 C -0.07 -3.26 4.58 -20.06 -0.09 -3.35 16 14 C -0.09 -3.29 4.93 -19.96 -0.10 -3.38 16 15 C 0.16 4.70 7.27 22.58 0.16 4.87 16 16 F -0.11 -3.56 16.82 44.97 0.76 -2.80 16 17 C -0.14 -2.87 9.99 22.33 0.22 -2.65 16 18 C 0.14 3.12 7.30 22.44 0.16 3.29 16 19 F -0.10 -2.15 17.17 44.97 0.77 -1.38 16 20 C 0.02 0.65 7.30 22.41 0.16 0.81 16 21 F -0.12 -3.41 17.09 44.97 0.77 -2.64 16 22 C 0.12 4.26 7.28 22.61 0.16 4.42 16 23 F -0.12 -4.66 16.73 44.97 0.75 -3.90 16 24 C -0.03 -1.73 7.28 23.10 0.17 -1.57 16 25 F -0.17 -8.56 16.27 44.97 0.73 -7.83 16 26 H 0.30 13.18 8.30 -92.71 -0.77 12.41 16 27 H 0.12 6.04 6.16 -2.91 -0.02 6.02 16 28 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -59.15 296.21 9.31 -49.84 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.24 Total: 7.38 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 2.02 Total: -37.64 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.24 Total: -40.40 kcal Atomic # 9 Polarization: -22.33 SS G_CDS: 3.78 Total: -18.55 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -59.15 9.31 -49.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205173151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.730 kcal (2) G-P(sol) polarization free energy of solvation -59.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds